Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0012308

Physical Location & Seq

Genomic Coordinates Reverse (-)

18161225 .. 18165830

Gene Structure 4606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG190000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGAGGCCGTACATTTCCCGACCGTTTCTTCCCGCCATTTCTCCGCGACGACCACGAACAGAACCTTCTCCGATTCAAAGAGGATTCCGACGGCCAAACTGGGCTCTTCGTGGACTGCTCCACGCTCTCCTACTCGGCTCTCTTCTAGAAACTTGTTCACTAGAGAGATATGGGGTTGGGTAAATGCCAAGAAAGTTACCACTGGTAGAAAAGAGTTGCGTGGAATTGTGAGAGCTGAAATGTTTGGTCAATTGACCAGTGGCCTCGAATCCGCTTGGAACAAGCTCAAAGGCGAAGAGGTTTTGACCAAGGAAAATATTGTGGAGCCAATGAGAGAAATCAGGAGGGCTCTTTTGGAAGCTGATGTAAGCCTTCCTGTTGTGAGAAGGTTTGTGCAAGCTGTCAGTGACCAGGCTGTTGGTGTTGGGGTTATTCGCGGAGTCAAACCGGATCAGCAATTGGTTAAGATTGTGCGTGATGAGCTAGTGAAACTGATGGGAGGGGAGGTATCTGAACTTGCTTTTGCAAAATCCAGTCCCAGTGTTATTTTATTGGCTGGTTTACAAGGAGTTGGGAAGACGACAGTATGTGCGAAATTGGCTTATTACCTTCAGAAACAGGTATCAGGAAAGCCAATCAAGCTTGTTGGCCGAGGAGAGCGGATGGAGGACCTTGAACCTTTTTACCCCGATCGTATGGCAGGACGCATATTGGGAATGGGAGACGTTCTCTCATTTGTCGAGAAGGCACAAGAAGTTATGCGCCAAGAAGATGCTGAAGAATTGCAAAAGAAGATTATGAGTACAAAGTTTGACTTCAATGATTTCCTAAAGCAAACTCGTGCTGTTGCCCGTATGGGTTCCATGACTCGGGTTCTTGGAATGATCCCTGGAATGGGGAAGGTTACTCCTGCACAAATTCGAGAGGCAGAAAAGAGTTTAGTGATAATGGAATCTATGATTGAAGCAATGACCCCTGAGGAAAGGGAGAAGCCAGAATTGTTGGCCGAATCTCCCATTAGGAGAAAAAGAATTGCTCAAGAGTCTGGGAAAACAGAGCAGCAGGTGAGCCAACTTGTTGCTCAACTGTTCCAAATGCGAGTTCGTATGAAGAATCTAATGGGTGCAATGGAAGGCGGTGGATCTATACCTGGACTGAATAATCTTGAGGAAGCCCTCAAAGTTGATCAGAAGGCTCCTGCTGGTACTGCAAGGCGTAAGCGACGATCTGAACCAAGGAGGCAGTTTGGTGACTCGGCATCGAGGCCCAGTCCTCGTGGTTTCGGGGCCAGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0019904 GO:0022607 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051259 GO:0051291 GO:0065003 GO:0070206 GO:0070208 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N SRP_SPB

Protein Analysis

432

Amino Acids

48.09

Weight (kDa)

10.13

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP54_N	PF02881	85 - 162	2.7e-19	SRP54-type protein, helical bundle domain
SRP54	PF00448	180 - 207	3.3e-07	SRP54-type protein, GTPase domain
SRP_SPB	PF02978	270 - 370	1.6e-24	Signal peptide binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03940
fragaria_vesca	FvH4_6g19110 FvH4_6g19110
malus_domestica	MD12G1027100.v1.1 MD14G1027200.v1.1
prunus_persica	Prupe.7G104500_v2.0.a1
pyrus_communis	pycom12g02600 pycom14g02590
rosa_chinensis	RchiOBHm_Chr3g0474211
rosa_laevigata	RLG00000023941
rosa_multiflora	Rmu_sc0004507.1_g000022 Rmu_sc0015051.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407430
rosa_rugosa	Rorug03G0139500
rosa_samantha	Rh3AG190000 Rh3BG219200 Rh3CG214600 Rh3DG214700
rosa_wichuraiana	Rw3G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1054
Acc36I	ACCTGC	1 cut(s)	1054
AccBSI	CCGCTC	1 cut(s)	661
AccII	CGCG	2 cut(s)	47, 438
AciI	CCGC	6 cut(s)	34, 45, 273, 438, 661, 1137
AclWI	GGATC	3 cut(s)	459, 880, 1150
AcoI	YGGCCR	3 cut(s)	93, 649, 1005
AcsI	RAATTY	1 cut(s)	918
AcuI	CTGAAG	2 cut(s)	596, 798
AfaI	GTAC	3 cut(s)	12, 805, 1207
AfiI	CCNNNNNNNGG	3 cut(s)	870, 895, 896
AgsI	TTSAA	4 cut(s)	78, 677, 820, 965
AjnI	CCWGG	4 cut(s)	411, 889, 1150, 1289
AjuI	GAANNNNNNNTTGG	2 cut(s)	1086, 1118
AluBI	AGCT	6 cut(s)	236, 286, 362, 401, 484, 643
AluI	AGCT	6 cut(s)	236, 286, 362, 401, 484, 643
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	3 cut(s)	459, 880, 1150
AlwNI	CAGNNNCTG	1 cut(s)	1296
Ama87I	CYCGRG	1 cut(s)	870
AoxI	GGCC	7 cut(s)	6, 93, 262, 649, 1005, 1265, 1287
ApeKI	GCWGC	1 cut(s)	1060
ApoI	RAATTY	1 cut(s)	918
AspLEI	GCGC	1 cut(s)	765
AspS9I	GGNCC	3 cut(s)	670, 1266, 1287
AsuHPI	GGTGA	2 cut(s)	1078, 1262
AvaI	CYCGRG	1 cut(s)	870
AvaII	GGWCC	1 cut(s)	670
AxyI	CCTNAGG	1 cut(s)	978
BanII	GRGCYC	2 cut(s)	107, 352
BauI	CACGAG	2 cut(s)	840, 1275
BbsI	GAAGAC	1 cut(s)	584
BbvI	GCAGC	1 cut(s)	1072
BccI	CCATC	2 cut(s)	490, 658
BceAI	ACGGC	1 cut(s)	108
BciT130I	CCWGG	4 cut(s)	413, 891, 1152, 1291
BclI	TGATCA	1 cut(s)	1186
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	3 cut(s)	147, 162, 485
BfuAI	ACCTGC	1 cut(s)	1054
BisI	GCNGC	1 cut(s)	1061
BlsI	GCNGC	1 cut(s)	1062
Bme1390I	CCNGG	4 cut(s)	413, 891, 1152, 1291
Bme18I	GGWCC	1 cut(s)	670
BmeT110I	CYCGRG	1 cut(s)	870
BmgT120I	GGNCC	3 cut(s)	670, 1266, 1287
BmiI	GGNNCC	4 cut(s)	327, 862, 1197, 1288
BmrFI	CCNGG	4 cut(s)	413, 891, 1152, 1291
BmrI	ACTGGG	3 cut(s)	110, 534, 1263
BmsI	GCATC	2 cut(s)	763, 1268
BmuI	ACTGGG	3 cut(s)	110, 534, 1263
BpiI	GAAGAC	1 cut(s)	584
BplI	GAGNNNNNCTC	2 cut(s)	714, 746
BpuEI	CTTGAG	2 cut(s)	1023, 1187
BsaJI	CCNNGG	4 cut(s)	309, 652, 889, 1235
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	3 cut(s)	870, 895, 896
Bse1I	ACTGG	6 cut(s)	105, 208, 258, 534, 540, 1269
Bse21I	CCTNAGG	1 cut(s)	978
Bse3DI	GCAATG	2 cut(s)	975, 1134
BseBI	CCWGG	4 cut(s)	413, 891, 1152, 1291
BseDI	CCNNGG	4 cut(s)	309, 652, 889, 1235
BseGI	GGATG	1 cut(s)	669
BseLI	CCNNNNNNNGG	3 cut(s)	870, 895, 896
BseMI	GCAATG	2 cut(s)	975, 1134
BseMII	CTCAG	1 cut(s)	969
BseNI	ACTGG	6 cut(s)	105, 208, 258, 534, 540, 1269
BseRI	GAGGAG	1 cut(s)	669
BseXI	GCAGC	1 cut(s)	1072
BsgI	GTGCAG	1 cut(s)	897
Bsh1236I	CGCG	2 cut(s)	47, 438
Bsh1285I	CGRYCG	2 cut(s)	24, 694
BshFI	GGCC	7 cut(s)	8, 95, 264, 651, 1007, 1267, 1289
BsiEI	CGRYCG	2 cut(s)	24, 694
BsiHKCI	CYCGRG	1 cut(s)	870
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	522
BslI	CCNNNNNNNGG	3 cut(s)	870, 895, 896
BsmAI	GTCTC	1 cut(s)	717
BsmBI	CGTCTC	1 cut(s)	717
BsmFI	GGGAC	1 cut(s)	522
BsnI	GGCC	7 cut(s)	8, 95, 264, 651, 1007, 1267, 1289
BsoBI	CYCGRG	1 cut(s)	870
Bsp1286I	GDGCHC	2 cut(s)	107, 352
Bsp143I	GATC	6 cut(s)	451, 691, 885, 1142, 1186, 1226
BspACI	CCGC	6 cut(s)	34, 45, 273, 438, 661, 1137
BspANI	GGCC	7 cut(s)	8, 95, 264, 651, 1007, 1267, 1289
BspCNI	CTCAG	1 cut(s)	970
BspFNI	CGCG	2 cut(s)	47, 438
BspLI	GGNNCC	4 cut(s)	327, 862, 1197, 1288
BspMI	ACCTGC	1 cut(s)	1054
BspPI	GGATC	3 cut(s)	459, 880, 1150
BspQI	GCTCTTC	1 cut(s)	112
BsrBI	CCGCTC	1 cut(s)	661
BsrDI	GCAATG	2 cut(s)	975, 1134
BsrI	ACTGG	6 cut(s)	105, 208, 258, 534, 540, 1269
BssECI	CCNNGG	4 cut(s)	309, 652, 889, 1235
BssMI	GATC	6 cut(s)	451, 691, 885, 1142, 1186, 1226
BssSI	CACGAG	2 cut(s)	840, 1275
BssT1I	CCWWGG	2 cut(s)	309, 1235
Bst2BI	CACGAG	2 cut(s)	840, 1275
Bst2UI	CCWGG	4 cut(s)	413, 891, 1152, 1291
Bst4CI	ACNGT	3 cut(s)	25, 586, 1089
Bst6I	CTCTTC	3 cut(s)	112, 148, 291
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	1 cut(s)	978
BstF5I	GGATG	1 cut(s)	669
BstFNI	CGCG	2 cut(s)	47, 438
BstHHI	GCGC	1 cut(s)	765
BstKTI	GATC	6 cut(s)	454, 694, 888, 1145, 1189, 1229
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	6 cut(s)	451, 691, 885, 1142, 1186, 1226
BstMCI	CGRYCG	2 cut(s)	24, 694
BstMWI	GCNNNNNNNGC	4 cut(s)	481, 599, 640, 1208
BstNI	CCWGG	4 cut(s)	413, 891, 1152, 1291
BstSCI	CCNGG	4 cut(s)	411, 889, 1150, 1289
BstUI	CGCG	2 cut(s)	47, 438
BstV1I	GCAGC	1 cut(s)	1072
BstV2I	GAAGAC	1 cut(s)	584
BstX2I	RGATCY	1 cut(s)	1142
BstXI	CCANNNNNNTGG	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	1142
Bsu36I	CCTNAGG	1 cut(s)	978
BsuRI	GGCC	7 cut(s)	8, 95, 264, 651, 1007, 1267, 1289
BtsCI	GGATG	1 cut(s)	669
BtsIMutI	CAGTG	4 cut(s)	201, 265, 412, 547
BveI	ACCTGC	1 cut(s)	1054
Cac8I	GCNNGC	1 cut(s)	399
CaiI	CAGNNNCTG	1 cut(s)	1296
CfoI	GCGC	1 cut(s)	765
Cfr13I	GGNCC	3 cut(s)	670, 1266, 1287
CseI	GACGC	1 cut(s)	714
Csp6I	GTAC	3 cut(s)	11, 804, 1206
CviAII	CATG	1 cut(s)	865
CviQI	GTAC	3 cut(s)	11, 804, 1206
DdeI	CTNAG	1 cut(s)	978
DpnI	GATC	6 cut(s)	453, 693, 887, 1144, 1188, 1228
DpnII	GATC	6 cut(s)	451, 691, 885, 1142, 1186, 1226
EaeI	YGGCCR	3 cut(s)	93, 649, 1005
Eam1104I	CTCTTC	3 cut(s)	112, 148, 291
EarI	CTCTTC	3 cut(s)	112, 148, 291
Eco130I	CCWWGG	2 cut(s)	309, 1235
Eco24I	GRGCYC	2 cut(s)	107, 352
Eco47I	GGWCC	1 cut(s)	670
Eco57I	CTGAAG	2 cut(s)	596, 798
Eco81I	CCTNAGG	1 cut(s)	978
Eco88I	CYCGRG	1 cut(s)	870
EcoO109I	RGGNCCY	1 cut(s)	670
EcoRII	CCWGG	4 cut(s)	411, 889, 1150, 1289
EcoT14I	CCWWGG	2 cut(s)	309, 1235
EcoT38I	GRGCYC	2 cut(s)	107, 352
ErhI	CCWWGG	2 cut(s)	309, 1235
Esp3I	CGTCTC	1 cut(s)	717
FaeI	CATG	1 cut(s)	868
FalI	AAGNNNNNCTT	2 cut(s)	800, 832
FaqI	GGGAC	1 cut(s)	522
FatI	CATG	1 cut(s)	864
FauI	CCCGC	1 cut(s)	41
FbaI	TGATCA	1 cut(s)	1186
Fnu4HI	GCNGC	1 cut(s)	1061
FokI	GGATG	1 cut(s)	676
FriOI	GRGCYC	2 cut(s)	107, 352
Fsp4HI	GCNGC	1 cut(s)	1061
FspBI	CTAG	3 cut(s)	147, 162, 485
GlaI	GCGC	1 cut(s)	764
GluI	GCNGC	1 cut(s)	1061
HaeIII	GGCC	7 cut(s)	8, 95, 264, 651, 1007, 1267, 1289
HapII	CCGG	1 cut(s)	449
HgaI	GACGC	1 cut(s)	714
HhaI	GCGC	1 cut(s)	765
Hin1II	CATG	1 cut(s)	868
Hin6I	GCGC	1 cut(s)	763
HinP1I	GCGC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	641
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	2 cut(s)	1078, 1262
Hpy166II	GTNNAC	3 cut(s)	114, 159, 563
Hpy188I	TCNGA	6 cut(s)	73, 90, 514, 615, 1191, 1231
Hpy188III	TCNNGA	8 cut(s)	19, 147, 343, 627, 742, 923, 1040, 1166
Hpy8I	GTNNAC	3 cut(s)	114, 159, 563
Hpy99I	CGWCG	3 cut(s)	52, 94, 1227
HpyAV	CCTTC	8 cut(s)	76, 381, 383, 620, 739, 895, 1127, 1186
HpyCH4III	ACNGT	3 cut(s)	25, 586, 1089
HpyCH4IV	ACGT	1 cut(s)	726
HpyCH4V	TGCA	6 cut(s)	397, 527, 787, 914, 1127, 1211
HpyF10VI	GCNNNNNNNGC	4 cut(s)	481, 599, 640, 1208
HpyF3I	CTNAG	1 cut(s)	978
HpySE526I	ACGT	1 cut(s)	726
Hsp92II	CATG	1 cut(s)	868
HspAI	GCGC	1 cut(s)	763
Ksp22I	TGATCA	1 cut(s)	1186
Kzo9I	GATC	6 cut(s)	451, 691, 885, 1142, 1186, 1226
LguI	GCTCTTC	1 cut(s)	112
LmnI	GCTCC	3 cut(s)	124, 325, 1201
Lsp1109I	GCAGC	1 cut(s)	1072
LweI	GCATC	2 cut(s)	763, 1268
MaeI	CTAG	3 cut(s)	147, 162, 485
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	4 cut(s)	196, 407, 904, 1250
MalI	GATC	6 cut(s)	453, 693, 887, 1144, 1188, 1228
MbiI	CCGCTC	1 cut(s)	661
MboI	GATC	6 cut(s)	451, 691, 885, 1142, 1186, 1226
MboII	GAAGA	9 cut(s)	21, 99, 135, 308, 589, 782, 791, 805, 1123
MfeI	CAATTG	2 cut(s)	251, 458
MflI	RGATCY	1 cut(s)	1142
MhlI	GDGCHC	2 cut(s)	107, 352
MluCI	AATT	8 cut(s)	225, 251, 458, 596, 782, 918, 998, 1032
MlyI	GAGTC	4 cut(s)	450, 862, 1052, 1247
MmeI	TCCRAC	1 cut(s)	113
MseI	TTAA	1 cut(s)	465
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	4 cut(s)	413, 891, 1152, 1291
MunI	CAATTG	2 cut(s)	251, 458
MvaI	CCWGG	4 cut(s)	413, 891, 1152, 1291
MvnI	CGCG	2 cut(s)	47, 438
MwoI	GCNNNNNNNGC	4 cut(s)	481, 599, 640, 1208
NdeII	GATC	6 cut(s)	451, 691, 885, 1142, 1186, 1226
NlaIII	CATG	1 cut(s)	868
NlaIV	GGNNCC	4 cut(s)	327, 862, 1197, 1288
NmeAIII	GCCGAG	3 cut(s)	115, 677, 1235
NmuCI	GTSAC	2 cut(s)	407, 1250
PaqCI	CACCTGC	1 cut(s)	1054
PciSI	GCTCTTC	1 cut(s)	112
PfeI	GAWTC	6 cut(s)	74, 85, 269, 953, 1010, 1114
PkrI	GCNGC	1 cut(s)	1062
Ple19I	CGATCG	1 cut(s)	694
PleI	GAGTC	4 cut(s)	449, 862, 1051, 1247
PpsI	GAGTC	4 cut(s)	449, 862, 1051, 1247
PpuMI	RGGWCCY	1 cut(s)	670
Psp5II	RGGWCCY	1 cut(s)	670
Psp6I	CCWGG	4 cut(s)	411, 889, 1150, 1289
PspGI	CCWGG	4 cut(s)	411, 889, 1150, 1289
PspN4I	GGNNCC	4 cut(s)	327, 862, 1197, 1288
PspPI	GGNCC	3 cut(s)	670, 1266, 1287
PspPPI	RGGWCCY	1 cut(s)	670
PstNI	CAGNNNCTG	1 cut(s)	1296
PsuI	RGATCY	1 cut(s)	1142
PvuI	CGATCG	1 cut(s)	694
RsaI	GTAC	3 cut(s)	12, 805, 1207
RsaNI	GTAC	3 cut(s)	11, 804, 1206
SapI	GCTCTTC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	1 cut(s)	1061
Sau3AI	GATC	6 cut(s)	451, 691, 885, 1142, 1186, 1226
Sau96I	GGNCC	3 cut(s)	670, 1266, 1287
SchI	GAGTC	4 cut(s)	450, 862, 1052, 1247
ScrFI	CCNGG	4 cut(s)	413, 891, 1152, 1291
SduI	GDGCHC	2 cut(s)	107, 352
SfaNI	GCATC	2 cut(s)	763, 1268
SinI	GGWCC	1 cut(s)	670
SmlI	CTYRAG	2 cut(s)	1038, 1166
SmoI	CTYRAG	2 cut(s)	1038, 1166
Sse9I	AATT	8 cut(s)	225, 251, 458, 596, 782, 918, 998, 1032
SsiI	CCGC	6 cut(s)	34, 45, 273, 438, 661, 1137
SspI	AATATT	1 cut(s)	319
SspMI	CTAG	3 cut(s)	147, 162, 485
StyD4I	CCNGG	4 cut(s)	411, 889, 1150, 1289
StyI	CCWWGG	2 cut(s)	309, 1235
TaaI	ACNGT	3 cut(s)	25, 586, 1089
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	4 cut(s)	267, 741, 922, 1262
TasI	AATT	8 cut(s)	225, 251, 458, 596, 782, 918, 998, 1032
TatI	WGTACW	1 cut(s)	803
TfiI	GAWTC	6 cut(s)	74, 85, 269, 953, 1010, 1114
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	4 cut(s)	208, 265, 412, 547
TseFI	GTSAC	2 cut(s)	407, 1250
TseI	GCWGC	1 cut(s)	1060
Tsp45I	GTSAC	2 cut(s)	407, 1250
TspDTI	ATGAA	1 cut(s)	1124
TspRI	CASTG	4 cut(s)	208, 265, 412, 547
VpaK11BI	GGWCC	1 cut(s)	670
XapI	RAATTY	1 cut(s)	918
XbaI	TCTAGA	1 cut(s)	146
XspI	CTAG	3 cut(s)	147, 162, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.