Rh3CG214600

Signal recognition particle 54 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0012308
Physical Location & Seq
Reverse (-)
19685918 .. 19690523
4606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG214600.1

Sequence Viewer

Length: 1146 bp
ATGGAGGCCGTACATTTCCCGACCGTTTCTTCCCGCCATTTCTCCGCGACGACCACGAACAGAACCTTCTCCGATTCAAAGAGGATTCCGACGGCCAAACTGGGCTCTTCGTGGACTGCTCCACGCTCTCCTACTCGGCTCTCTTCTAGAAACTTGTTCACTAGAGAGATATGGGGTTGGGTAAATGCCAAGAAAGTTACCACTGGTAGAAAAGAGTTGCGTGGAATTGTGAGAGCTGAAATGTTTGGTCAATTGACCAGTGGCCTCGAATCCGCTTGGAACAAGCTCAAAGGCGAAGAGGTTTTGACCAAGGAAAATATTGTGGAGCCAATGAGAGAAATCAGGAGGGCTCTTTTGGAAGCTGATGTAAGCCTTCCTGTTGTGAGAAGGTTTGTGCAAGCTGTCAGTGACCAGGCTGTTGGTGTTGGGGTTATTCGCGGAGTCAAACCGGATCAGCAATTGGTTAAGGTATCAGGAAAGCCAATCAAGCTTGTTGGCCGAGGAGAGCGGATGGAGGACCTTGAACCTTTTTACCCCGATCGTATGGCAGGACGCATATTGGGAATGGGAGACGTTCTCTCATTTGTCGAGAAGGCACAAGAAGTTATGCGCCAAGAAGATGCTGAAGAATTGCAAAAGAAGATTATGAGTACAAAGTTTGACTTCAATGATTTCCTAAAGCAAACTCGTGCTGTTGCCCGTATGGGTTCCATGACTCGGGTTCTTGGAATGATCCCTGGAATGGGGAAGGTTACTCCTGCACAAATTCGAGAGGCAGAAAAGAGTTTAGTGATAATGGAATCTATGATTGAAGCAATGACCCCTGAGGAAAGGGAGAAGCCAGAATTGTTGGCCGAATCTCCCATTAGGAGAAAAAGAATTGCTCAAGAGTCTGGGAAAACAGAGCAGCAGGTGAGCCAACTTGTTGCTCAACTGTTCCAAATGCGAGTTCGTATGAAGAATCTAATGGGTGCAATGGAAGGCGGTGGATCTATACCTGGACTGAATAATCTTGAGGAAGCCCTCAAAGTTGATCAGAAGGCTCCTGCTGGTACTGCAAGGCGTAAGCGACGATCTGAACCAAGGAGGCAGTTTGGTGACTCGGCATCGAGGCCCAGTCCTCGTGGTTTCGGGGCCAGGAACTGA

Protein Analysis

381

Amino Acids

42.68

Weight (kDa)

10.31

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP54_N PF02881 85 - 156 7.9e-16 SRP54-type protein, helical bundle domain
SRP_SPB PF02978 219 - 319 1.2e-24 Signal peptide binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012308)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03940
fragaria_vesca FvH4_6g19110 FvH4_6g19110
malus_domestica MD12G1027100.v1.1 MD14G1027200.v1.1
prunus_persica Prupe.7G104500_v2.0.a1
pyrus_communis pycom12g02600 pycom14g02590
rosa_chinensis RchiOBHm_Chr3g0474211
rosa_laevigata RLG00000023941
rosa_multiflora Rmu_sc0004507.1_g000022 Rmu_sc0015051.1_g000004
rosa_roxburghii Rroxscaffold_6G00407430
rosa_rugosa Rorug03G0139500
rosa_samantha Rh3AG190000 Rh3BG219200 Rh3CG214600 Rh3DG214700
rosa_wichuraiana Rw3G017330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 901
Acc36I ACCTGC 1 cut(s) 901
AccBSI CCGCTC 1 cut(s) 508
AccII CGCG 2 cut(s) 47, 438
AciI CCGC 6 cut(s) 34, 45, 273, 438, 508, 984
AclWI GGATC 3 cut(s) 459, 727, 997
AcoI YGGCCR 3 cut(s) 93, 496, 852
AcsI RAATTY 1 cut(s) 765
AcuI CTGAAG 1 cut(s) 645
AfaI GTAC 3 cut(s) 12, 652, 1054
AfiI CCNNNNNNNGG 3 cut(s) 717, 742, 743
AgsI TTSAA 4 cut(s) 78, 524, 667, 812
AjnI CCWGG 4 cut(s) 411, 736, 997, 1136
AjuI GAANNNNNNNTTGG 2 cut(s) 933, 965
AluBI AGCT 5 cut(s) 236, 286, 362, 401, 490
AluI AGCT 5 cut(s) 236, 286, 362, 401, 490
Alw26I GTCTC 1 cut(s) 564
AlwI GGATC 3 cut(s) 459, 727, 997
AlwNI CAGNNNCTG 1 cut(s) 1143
Ama87I CYCGRG 1 cut(s) 717
AoxI GGCC 7 cut(s) 6, 93, 262, 496, 852, 1112, 1134
ApeKI GCWGC 1 cut(s) 907
ApoI RAATTY 1 cut(s) 765
AspLEI GCGC 1 cut(s) 612
AspS9I GGNCC 3 cut(s) 517, 1113, 1134
AsuHPI GGTGA 2 cut(s) 925, 1109
AvaI CYCGRG 1 cut(s) 717
AvaII GGWCC 1 cut(s) 517
AxyI CCTNAGG 1 cut(s) 825
BanII GRGCYC 2 cut(s) 107, 352
BauI CACGAG 2 cut(s) 687, 1122
BbvI GCAGC 1 cut(s) 919
BccI CCATC 1 cut(s) 505
BceAI ACGGC 1 cut(s) 108
BciT130I CCWGG 4 cut(s) 413, 738, 999, 1138
BclI TGATCA 1 cut(s) 1033
BcoDI GTCTC 1 cut(s) 564
BfaI CTAG 2 cut(s) 147, 162
BfuAI ACCTGC 1 cut(s) 901
BisI GCNGC 1 cut(s) 908
BlsI GCNGC 1 cut(s) 909
Bme1390I CCNGG 4 cut(s) 413, 738, 999, 1138
Bme18I GGWCC 1 cut(s) 517
BmeT110I CYCGRG 1 cut(s) 717
BmgT120I GGNCC 3 cut(s) 517, 1113, 1134
BmiI GGNNCC 4 cut(s) 327, 709, 1044, 1135
BmrFI CCNGG 4 cut(s) 413, 738, 999, 1138
BmrI ACTGGG 2 cut(s) 110, 1110
BmsI GCATC 2 cut(s) 610, 1115
BmuI ACTGGG 2 cut(s) 110, 1110
BplI GAGNNNNNCTC 2 cut(s) 561, 593
BpuEI CTTGAG 2 cut(s) 870, 1034
BsaJI CCNNGG 4 cut(s) 309, 499, 736, 1082
BsaWI WCCGGW 1 cut(s) 448
Bsc4I CCNNNNNNNGG 3 cut(s) 717, 742, 743
Bse1I ACTGG 4 cut(s) 105, 208, 258, 1116
Bse21I CCTNAGG 1 cut(s) 825
Bse3DI GCAATG 2 cut(s) 822, 981
BseBI CCWGG 4 cut(s) 413, 738, 999, 1138
BseDI CCNNGG 4 cut(s) 309, 499, 736, 1082
BseGI GGATG 1 cut(s) 516
BseLI CCNNNNNNNGG 3 cut(s) 717, 742, 743
BseMI GCAATG 2 cut(s) 822, 981
BseMII CTCAG 1 cut(s) 816
BseNI ACTGG 4 cut(s) 105, 208, 258, 1116
BseRI GAGGAG 1 cut(s) 516
BseXI GCAGC 1 cut(s) 919
BsgI GTGCAG 1 cut(s) 744
Bsh1236I CGCG 2 cut(s) 47, 438
Bsh1285I CGRYCG 2 cut(s) 24, 541
BshFI GGCC 7 cut(s) 8, 95, 264, 498, 854, 1114, 1136
BsiEI CGRYCG 2 cut(s) 24, 541
BsiHKCI CYCGRG 1 cut(s) 717
BsiSI CCGG 1 cut(s) 449
BslI CCNNNNNNNGG 3 cut(s) 717, 742, 743
BsmAI GTCTC 1 cut(s) 564
BsmBI CGTCTC 1 cut(s) 564
BsnI GGCC 7 cut(s) 8, 95, 264, 498, 854, 1114, 1136
BsoBI CYCGRG 1 cut(s) 717
Bsp1286I GDGCHC 2 cut(s) 107, 352
Bsp143I GATC 6 cut(s) 451, 538, 732, 989, 1033, 1073
BspACI CCGC 6 cut(s) 34, 45, 273, 438, 508, 984
BspANI GGCC 7 cut(s) 8, 95, 264, 498, 854, 1114, 1136
BspCNI CTCAG 1 cut(s) 817
BspFNI CGCG 2 cut(s) 47, 438
BspLI GGNNCC 4 cut(s) 327, 709, 1044, 1135
BspMI ACCTGC 1 cut(s) 901
BspPI GGATC 3 cut(s) 459, 727, 997
BspQI GCTCTTC 1 cut(s) 112
BsrBI CCGCTC 1 cut(s) 508
BsrDI GCAATG 2 cut(s) 822, 981
BsrI ACTGG 4 cut(s) 105, 208, 258, 1116
BssECI CCNNGG 4 cut(s) 309, 499, 736, 1082
BssMI GATC 6 cut(s) 451, 538, 732, 989, 1033, 1073
BssSI CACGAG 2 cut(s) 687, 1122
BssT1I CCWWGG 2 cut(s) 309, 1082
Bst2BI CACGAG 2 cut(s) 687, 1122
Bst2UI CCWGG 4 cut(s) 413, 738, 999, 1138
Bst4CI ACNGT 2 cut(s) 25, 936
Bst6I CTCTTC 3 cut(s) 112, 148, 291
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 1 cut(s) 825
BstF5I GGATG 1 cut(s) 516
BstFNI CGCG 2 cut(s) 47, 438
BstHHI GCGC 1 cut(s) 612
BstKTI GATC 6 cut(s) 454, 541, 735, 992, 1036, 1076
BstMAI GTCTC 1 cut(s) 564
BstMBI GATC 6 cut(s) 451, 538, 732, 989, 1033, 1073
BstMCI CGRYCG 2 cut(s) 24, 541
BstMWI GCNNNNNNNGC 2 cut(s) 487, 1055
BstNI CCWGG 4 cut(s) 413, 738, 999, 1138
BstSCI CCNGG 4 cut(s) 411, 736, 997, 1136
BstUI CGCG 2 cut(s) 47, 438
BstV1I GCAGC 1 cut(s) 919
BstX2I RGATCY 1 cut(s) 989
BstXI CCANNNNNNTGG 1 cut(s) 419
BstYI RGATCY 1 cut(s) 989
Bsu36I CCTNAGG 1 cut(s) 825
BsuRI GGCC 7 cut(s) 8, 95, 264, 498, 854, 1114, 1136
BtsCI GGATG 1 cut(s) 516
BtsIMutI CAGTG 3 cut(s) 201, 265, 412
BveI ACCTGC 1 cut(s) 901
Cac8I GCNNGC 1 cut(s) 399
CaiI CAGNNNCTG 1 cut(s) 1143
CfoI GCGC 1 cut(s) 612
Cfr13I GGNCC 3 cut(s) 517, 1113, 1134
CseI GACGC 1 cut(s) 561
Csp6I GTAC 3 cut(s) 11, 651, 1053
CviAII CATG 1 cut(s) 712
CviQI GTAC 3 cut(s) 11, 651, 1053
DdeI CTNAG 1 cut(s) 825
DpnI GATC 6 cut(s) 453, 540, 734, 991, 1035, 1075
DpnII GATC 6 cut(s) 451, 538, 732, 989, 1033, 1073
EaeI YGGCCR 3 cut(s) 93, 496, 852
Eam1104I CTCTTC 3 cut(s) 112, 148, 291
EarI CTCTTC 3 cut(s) 112, 148, 291
Eco130I CCWWGG 2 cut(s) 309, 1082
Eco24I GRGCYC 2 cut(s) 107, 352
Eco47I GGWCC 1 cut(s) 517
Eco57I CTGAAG 1 cut(s) 645
Eco81I CCTNAGG 1 cut(s) 825
Eco88I CYCGRG 1 cut(s) 717
EcoO109I RGGNCCY 1 cut(s) 517
EcoRII CCWGG 4 cut(s) 411, 736, 997, 1136
EcoT14I CCWWGG 2 cut(s) 309, 1082
EcoT38I GRGCYC 2 cut(s) 107, 352
ErhI CCWWGG 2 cut(s) 309, 1082
Esp3I CGTCTC 1 cut(s) 564
FaeI CATG 1 cut(s) 715
FalI AAGNNNNNCTT 2 cut(s) 647, 679
FatI CATG 1 cut(s) 711
FauI CCCGC 1 cut(s) 41
FbaI TGATCA 1 cut(s) 1033
Fnu4HI GCNGC 1 cut(s) 908
FokI GGATG 1 cut(s) 523
FriOI GRGCYC 2 cut(s) 107, 352
Fsp4HI GCNGC 1 cut(s) 908
FspBI CTAG 2 cut(s) 147, 162
GlaI GCGC 1 cut(s) 611
GluI GCNGC 1 cut(s) 908
HaeIII GGCC 7 cut(s) 8, 95, 264, 498, 854, 1114, 1136
HapII CCGG 1 cut(s) 449
HgaI GACGC 1 cut(s) 561
HhaI GCGC 1 cut(s) 612
Hin1II CATG 1 cut(s) 715
Hin6I GCGC 1 cut(s) 610
HinP1I GCGC 1 cut(s) 610
HindIII AAGCTT 1 cut(s) 488
HpaII CCGG 1 cut(s) 449
HphI GGTGA 2 cut(s) 925, 1109
Hpy166II GTNNAC 2 cut(s) 114, 159
Hpy188I TCNGA 4 cut(s) 73, 90, 1038, 1078
Hpy188III TCNNGA 8 cut(s) 19, 147, 343, 474, 589, 770, 887, 1013
Hpy8I GTNNAC 2 cut(s) 114, 159
Hpy99I CGWCG 3 cut(s) 52, 94, 1074
HpyAV CCTTC 7 cut(s) 76, 381, 383, 586, 742, 974, 1033
HpyCH4III ACNGT 2 cut(s) 25, 936
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 5 cut(s) 397, 634, 761, 974, 1058
HpyF10VI GCNNNNNNNGC 2 cut(s) 487, 1055
HpyF3I CTNAG 1 cut(s) 825
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 1 cut(s) 715
HspAI GCGC 1 cut(s) 610
Ksp22I TGATCA 1 cut(s) 1033
Kzo9I GATC 6 cut(s) 451, 538, 732, 989, 1033, 1073
LguI GCTCTTC 1 cut(s) 112
LmnI GCTCC 3 cut(s) 124, 325, 1048
Lsp1109I GCAGC 1 cut(s) 919
LweI GCATC 2 cut(s) 610, 1115
MaeI CTAG 2 cut(s) 147, 162
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 4 cut(s) 196, 407, 751, 1097
MalI GATC 6 cut(s) 453, 540, 734, 991, 1035, 1075
MbiI CCGCTC 1 cut(s) 508
MboI GATC 6 cut(s) 451, 538, 732, 989, 1033, 1073
MboII GAAGA 8 cut(s) 21, 99, 135, 308, 629, 638, 652, 970
MfeI CAATTG 2 cut(s) 251, 458
MflI RGATCY 1 cut(s) 989
MhlI GDGCHC 2 cut(s) 107, 352
MluCI AATT 7 cut(s) 225, 251, 458, 629, 765, 845, 879
MlyI GAGTC 4 cut(s) 450, 709, 899, 1094
MmeI TCCRAC 1 cut(s) 113
MseI TTAA 1 cut(s) 465
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 4 cut(s) 413, 738, 999, 1138
MunI CAATTG 2 cut(s) 251, 458
MvaI CCWGG 4 cut(s) 413, 738, 999, 1138
MvnI CGCG 2 cut(s) 47, 438
MwoI GCNNNNNNNGC 2 cut(s) 487, 1055
NdeII GATC 6 cut(s) 451, 538, 732, 989, 1033, 1073
NlaIII CATG 1 cut(s) 715
NlaIV GGNNCC 4 cut(s) 327, 709, 1044, 1135
NmeAIII GCCGAG 3 cut(s) 115, 524, 1082
NmuCI GTSAC 2 cut(s) 407, 1097
PaqCI CACCTGC 1 cut(s) 901
PciSI GCTCTTC 1 cut(s) 112
PfeI GAWTC 6 cut(s) 74, 85, 269, 800, 857, 961
PkrI GCNGC 1 cut(s) 909
Ple19I CGATCG 1 cut(s) 541
PleI GAGTC 4 cut(s) 449, 709, 898, 1094
PpsI GAGTC 4 cut(s) 449, 709, 898, 1094
PpuMI RGGWCCY 1 cut(s) 517
Psp5II RGGWCCY 1 cut(s) 517
Psp6I CCWGG 4 cut(s) 411, 736, 997, 1136
PspGI CCWGG 4 cut(s) 411, 736, 997, 1136
PspN4I GGNNCC 4 cut(s) 327, 709, 1044, 1135
PspPI GGNCC 3 cut(s) 517, 1113, 1134
PspPPI RGGWCCY 1 cut(s) 517
PstNI CAGNNNCTG 1 cut(s) 1143
PsuI RGATCY 1 cut(s) 989
PvuI CGATCG 1 cut(s) 541
RsaI GTAC 3 cut(s) 12, 652, 1054
RsaNI GTAC 3 cut(s) 11, 651, 1053
SapI GCTCTTC 1 cut(s) 112
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 1 cut(s) 908
Sau3AI GATC 6 cut(s) 451, 538, 732, 989, 1033, 1073
Sau96I GGNCC 3 cut(s) 517, 1113, 1134
SchI GAGTC 4 cut(s) 450, 709, 899, 1094
ScrFI CCNGG 4 cut(s) 413, 738, 999, 1138
SduI GDGCHC 2 cut(s) 107, 352
SfaNI GCATC 2 cut(s) 610, 1115
SinI GGWCC 1 cut(s) 517
SmlI CTYRAG 2 cut(s) 885, 1013
SmoI CTYRAG 2 cut(s) 885, 1013
Sse9I AATT 7 cut(s) 225, 251, 458, 629, 765, 845, 879
SsiI CCGC 6 cut(s) 34, 45, 273, 438, 508, 984
SspI AATATT 1 cut(s) 319
SspMI CTAG 2 cut(s) 147, 162
StyD4I CCNGG 4 cut(s) 411, 736, 997, 1136
StyI CCWWGG 2 cut(s) 309, 1082
TaaI ACNGT 2 cut(s) 25, 936
TaiI ACGT 1 cut(s) 576
TaqI TCGA 4 cut(s) 267, 588, 769, 1109
TasI AATT 7 cut(s) 225, 251, 458, 629, 765, 845, 879
TatI WGTACW 1 cut(s) 650
TfiI GAWTC 6 cut(s) 74, 85, 269, 800, 857, 961
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 3 cut(s) 208, 265, 412
TseFI GTSAC 2 cut(s) 407, 1097
TseI GCWGC 1 cut(s) 907
Tsp45I GTSAC 2 cut(s) 407, 1097
TspDTI ATGAA 1 cut(s) 971
TspRI CASTG 3 cut(s) 208, 265, 412
VpaK11BI GGWCC 1 cut(s) 517
XapI RAATTY 1 cut(s) 765
XbaI TCTAGA 1 cut(s) 146
XspI CTAG 2 cut(s) 147, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.