Rh3BG095000

Golgi vesicle prefusion complex stabilization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0019916
Physical Location & Seq
Reverse (-)
7570999 .. 7575782
4784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG095000.1

Sequence Viewer

Length: 840 bp
ATGTTTGACAATTTGGGTACAGACGGCTACAGGGACTTGGCTATGGAGATTGGGGATCTATACGCTGACCATGGTGTTTTACTCCCGGTTGTGACCATGACCGGCATCATTGATGAAAAGGTTCTTAAGGTTAAAGGGCCTGTTGTCAAAAGCATTTTCGATATTCTATTTGATAACTTTGATGACTATTCAGACGAGTCAGACGATGATGATGATGTTGTAAGGAAGCGCACCAAAGACATTGACTGGTCGAAGTACCCCCCTGAGAGCTATGCTCCTTTCAGCAAGAAACAAGTCATCGAGGACGACCCAGAAAACCCAAAAGATTTGGAGCAAATGTTCGACACAATGCGCAGGACTGGAGCCCTTGTCAGCACTGTGACCAAGATGCTCAACATGCTACAAAATGATGGATTCTTGTCCCAAGTCGAGGAGATCAGGACTGCTTTAGAAGTGGATCATAATCTGCCTGAAGTCGTGACTCATACTGGTGTCATCGAGATCTATGGCAGGCATGATGAGGCCAAGCATGCTCTCAAGTCTGTACCAGGGATTACTACAATGACAAGAAAAACCTCTAAATCCAAGAGCAAGACTAAGGCGAAGGCTAACACTTCCGAGGAGATAGAGAGATTATTAGAGATTGACAATGTCTACGACCCCGTTCCTCCTCCTTACCAACAGGGCCCCGAGCCCATTGTGGTCTGTCCAAATGACCCCAAGGACTTGGCAGAAGTCTATGAGAAGGTTCTGTGTTTTGTGGGTATGAGAGGTGTCATCGAGATTCTCTTAGGGAATTGGATTGCTCATTCCATTACCTATGTTATAGATTCGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

279

Amino Acids

31.44

Weight (kDa)

4.65

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019916)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0459121
rosa_rugosa Rorug03G0033500
rosa_samantha Rh1DG011000 Rh3BG095000 Rh3CG095300 Rh3DG095100 Rh3DG095700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 353
AccI GTMKAC 1 cut(s) 654
AclWI GGATC 2 cut(s) 63, 465
AcuI CTGAAG 1 cut(s) 492
AfaI GTAC 3 cut(s) 19, 257, 546
AfiI CCNNNNNNNGG 1 cut(s) 430
AflII CTTAAG 1 cut(s) 125
AjnI CCWGG 1 cut(s) 547
AloI GAACNNNNNNTCC 2 cut(s) 323, 355
AluBI AGCT 1 cut(s) 270
AluI AGCT 1 cut(s) 270
AlwI GGATC 2 cut(s) 63, 465
Ama87I CYCGRG 1 cut(s) 689
AoxI GGCC 3 cut(s) 137, 522, 685
ApaI GGGCCC 1 cut(s) 689
Asp700I GAANNNNTTC 1 cut(s) 120
AspLEI GCGC 2 cut(s) 231, 354
AspS9I GGNCC 3 cut(s) 137, 685, 686
AsuC2I CCSGG 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 689
BaeGI GKGCMC 1 cut(s) 689
BanII GRGCYC 3 cut(s) 367, 689, 696
BccI CCATC 1 cut(s) 404
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 549
BcnI CCSGG 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 28
BfrI CTTAAG 1 cut(s) 125
BglII AGATCT 1 cut(s) 501
Bme1390I CCNGG 2 cut(s) 86, 549
BmeT110I CYCGRG 1 cut(s) 689
BmgT120I GGNCC 3 cut(s) 137, 685, 686
BmiI GGNNCC 3 cut(s) 364, 687, 688
BmrFI CCNGG 2 cut(s) 86, 549
BmsI GCATC 2 cut(s) 114, 378
BplI GAGNNNNNCTC 2 cut(s) 259, 291
BpmI CTGGAG 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 521
BpuMI CCSGG 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 462
BsaJI CCNNGG 4 cut(s) 70, 548, 618, 720
BsaXI ACNNNNNCTCC 4 cut(s) 323, 353, 354, 384
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 3 cut(s) 251, 364, 493
Bse8I GATNNNNATC 1 cut(s) 462
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 4 cut(s) 70, 548, 618, 720
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 3 cut(s) 251, 364, 493
BseRI GAGGAG 3 cut(s) 446, 635, 660
BseSI GKGCMC 1 cut(s) 689
BshFI GGCC 3 cut(s) 139, 524, 687
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 2 cut(s) 86, 102
BslFI GGGAC 2 cut(s) 47, 406
BslI CCNNNNNNNGG 1 cut(s) 430
BsmFI GGGAC 2 cut(s) 47, 406
BsnI GGCC 3 cut(s) 139, 524, 687
BsoBI CYCGRG 1 cut(s) 689
Bsp120I GGGCCC 1 cut(s) 685
Bsp1286I GDGCHC 3 cut(s) 367, 689, 696
Bsp143I GATC 4 cut(s) 55, 435, 457, 501
Bsp19I CCATGG 1 cut(s) 70
BspANI GGCC 3 cut(s) 139, 524, 687
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 3 cut(s) 364, 687, 688
BspPI GGATC 2 cut(s) 63, 465
BspTI CTTAAG 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 3 cut(s) 251, 364, 493
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 4 cut(s) 70, 548, 618, 720
BssMI GATC 4 cut(s) 55, 435, 457, 501
BssT1I CCWWGG 2 cut(s) 70, 720
Bst2UI CCWGG 1 cut(s) 549
Bst4CI ACNGT 1 cut(s) 379
BstAFI CTTAAG 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 512, 531
BstDEI CTNAG 3 cut(s) 264, 597, 790
BstDSI CCRYGG 1 cut(s) 70
BstHHI GCGC 2 cut(s) 231, 354
BstKTI GATC 4 cut(s) 58, 438, 460, 504
BstMBI GATC 4 cut(s) 55, 435, 457, 501
BstMWI GCNNNNNNNGC 2 cut(s) 397, 530
BstNI CCWGG 1 cut(s) 549
BstNSI RCATGY 2 cut(s) 400, 533
BstSCI CCNGG 2 cut(s) 84, 547
BstSFI CTRYAG 1 cut(s) 28
BstSLI GKGCMC 1 cut(s) 689
BstX2I RGATCY 2 cut(s) 55, 501
BstXI CCANNNNNNTGG 1 cut(s) 727
BstYI RGATCY 2 cut(s) 55, 501
BsuRI GGCC 3 cut(s) 139, 524, 687
BtgI CCRYGG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 375
Cac8I GCNNGC 2 cut(s) 512, 531
CfoI GCGC 2 cut(s) 231, 354
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 3 cut(s) 137, 685, 686
Csp6I GTAC 3 cut(s) 18, 256, 545
CviAII CATG 5 cut(s) 71, 97, 397, 515, 530
CviJI RGCY 9 cut(s) 27, 41, 139, 270, 365, 524, 608, 687, 694
CviKI_1 RGCY 9 cut(s) 27, 41, 139, 270, 365, 524, 608, 687, 694
CviQI GTAC 3 cut(s) 18, 256, 545
DdeI CTNAG 3 cut(s) 264, 597, 790
DpnI GATC 4 cut(s) 57, 437, 459, 503
DpnII GATC 4 cut(s) 55, 435, 457, 501
Eco130I CCWWGG 2 cut(s) 70, 720
Eco24I GRGCYC 3 cut(s) 367, 689, 696
Eco57I CTGAAG 1 cut(s) 492
Eco88I CYCGRG 1 cut(s) 689
EcoO109I RGGNCCY 3 cut(s) 137, 685, 686
EcoRII CCWGG 1 cut(s) 547
EcoT14I CCWWGG 2 cut(s) 70, 720
EcoT38I GRGCYC 3 cut(s) 367, 689, 696
ErhI CCWWGG 2 cut(s) 70, 720
FaeI CATG 5 cut(s) 74, 100, 400, 518, 533
FaqI GGGAC 2 cut(s) 47, 406
FatI CATG 5 cut(s) 70, 96, 396, 514, 529
FblI GTMKAC 1 cut(s) 654
FriOI GRGCYC 3 cut(s) 367, 689, 696
FspI TGCGCA 1 cut(s) 353
GlaI GCGC 2 cut(s) 230, 353
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 3 cut(s) 139, 524, 687
HapII CCGG 2 cut(s) 86, 102
HhaI GCGC 2 cut(s) 231, 354
Hin1II CATG 5 cut(s) 74, 100, 400, 518, 533
Hin6I GCGC 2 cut(s) 229, 352
HinP1I GCGC 2 cut(s) 229, 352
HinfI GANTC 5 cut(s) 197, 414, 481, 784, 830
HpaII CCGG 2 cut(s) 86, 102
Hpy166II GTNNAC 1 cut(s) 655
Hpy188I TCNGA 3 cut(s) 193, 202, 619
Hpy188III TCNNGA 4 cut(s) 439, 478, 499, 781
Hpy8I GTNNAC 1 cut(s) 655
HpyAV CCTTC 2 cut(s) 598, 739
HpyCH4III ACNGT 1 cut(s) 379
HpyF10VI GCNNNNNNNGC 2 cut(s) 397, 530
HpyF3I CTNAG 3 cut(s) 264, 597, 790
Hsp92II CATG 5 cut(s) 74, 100, 400, 518, 533
HspAI GCGC 2 cut(s) 229, 352
Kzo9I GATC 4 cut(s) 55, 435, 457, 501
LmnI GCTCC 3 cut(s) 280, 331, 362
LweI GCATC 2 cut(s) 114, 378
MaeIII GTNAC 3 cut(s) 91, 379, 478
MalI GATC 4 cut(s) 57, 437, 459, 503
MboI GATC 4 cut(s) 55, 435, 457, 501
MflI RGATCY 2 cut(s) 55, 501
MhlI GDGCHC 3 cut(s) 367, 689, 696
MluCI AATT 2 cut(s) 10, 796
MlyI GAGTC 2 cut(s) 206, 475
MnlI CCTC 8 cut(s) 295, 424, 514, 586, 613, 678, 681, 764
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 2 cut(s) 126, 132
MslI CAYNNNNRTG 1 cut(s) 489
MspCI CTTAAG 1 cut(s) 125
MspI CCGG 2 cut(s) 86, 102
MspR9I CCNGG 2 cut(s) 86, 549
MvaI CCWGG 1 cut(s) 549
MwoI GCNNNNNNNGC 2 cut(s) 397, 530
NciI CCSGG 1 cut(s) 86
NcoI CCATGG 1 cut(s) 70
NdeII GATC 4 cut(s) 55, 435, 457, 501
NlaIII CATG 5 cut(s) 74, 100, 400, 518, 533
NlaIV GGNNCC 3 cut(s) 364, 687, 688
NmuCI GTSAC 3 cut(s) 91, 379, 478
NsbI TGCGCA 1 cut(s) 353
NspI RCATGY 2 cut(s) 400, 533
PaeI GCATGC 1 cut(s) 533
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 3 cut(s) 414, 784, 830
PflFI GACNNNGTC 1 cut(s) 650
PleI GAGTC 2 cut(s) 205, 475
PpsI GAGTC 2 cut(s) 205, 475
Psp6I CCWGG 1 cut(s) 547
PspGI CCWGG 1 cut(s) 547
PspN4I GGNNCC 3 cut(s) 364, 687, 688
PspOMI GGGCCC 1 cut(s) 685
PspPI GGNCC 3 cut(s) 137, 685, 686
PsuI RGATCY 2 cut(s) 55, 501
PsyI GACNNNGTC 1 cut(s) 650
RsaI GTAC 3 cut(s) 19, 257, 546
RsaNI GTAC 3 cut(s) 18, 256, 545
RseI CAYNNNNRTG 1 cut(s) 489
SaqAI TTAA 2 cut(s) 126, 132
Sau3AI GATC 4 cut(s) 55, 435, 457, 501
Sau96I GGNCC 3 cut(s) 137, 685, 686
SchI GAGTC 2 cut(s) 206, 475
ScrFI CCNGG 2 cut(s) 86, 549
SduI GDGCHC 3 cut(s) 367, 689, 696
SetI ASST 7 cut(s) 123, 132, 272, 578, 750, 775, 821
SfaNI GCATC 2 cut(s) 114, 378
SfcI CTRYAG 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 489
SmlI CTYRAG 2 cut(s) 125, 536
SmoI CTYRAG 2 cut(s) 125, 536
SphI GCATGC 1 cut(s) 533
Sse9I AATT 2 cut(s) 10, 796
StyD4I CCNGG 2 cut(s) 84, 547
StyI CCWWGG 2 cut(s) 70, 720
TaaI ACNGT 1 cut(s) 379
TaqI TCGA 8 cut(s) 159, 251, 300, 342, 429, 498, 780, 833
TasI AATT 2 cut(s) 10, 796
TfiI GAWTC 3 cut(s) 414, 784, 830
Tru1I TTAA 2 cut(s) 126, 132
Tru9I TTAA 2 cut(s) 126, 132
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 3 cut(s) 91, 379, 478
Tsp45I GTSAC 3 cut(s) 91, 379, 478
TspDTI ATGAA 1 cut(s) 129
TspRI CASTG 1 cut(s) 382
Tth111I GACNNNGTC 1 cut(s) 650
Vha464I CTTAAG 1 cut(s) 125
XceI RCATGY 2 cut(s) 400, 533
XmiI GTMKAC 1 cut(s) 654
XmnI GAANNNNTTC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.