Rh3CG095300

Golgi vesicle prefusion complex stabilization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0019916
Physical Location & Seq
Reverse (-)
7512408 .. 7512935
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG095300.1

Sequence Viewer

Length: 528 bp
ATGGAGATGATGGGCAAGGGACTGCAGCCCAGTGCCAGCTCATACACCGCCGTGTATGAGGCGTTTTCTCGGCAAGAGAAAATGGAGGAGGCCAAGCAGTTTCTTGGGGAGATGAAAGCCAAGGGGTTTGTGGCTGACAACAAGGCAATGAGGGCTATGAGACTGGTTCTTAAGGGCAAAGGAGCTGTGATCAAAAGCATCACCGACATTCTCTTCTCAGATGAGTTAGAAGACTACTCAGACGACTCAGATGATGATGATGGAGTACAGAACTACAGCGAAGAGATGGAATCGAGGTTCCCTCCGGATAGTTATTTATCTTTCAGCAAGAAACATGTCATCGAGGATGACCCAGAAAACCCCAAAGATTTGCAACAAGTCTTCGATAAGATGCGCAAAGGAAGACCTGTCATCAATATTTATTTTCACCAAGATGATCATCATGCTAAAGAAAGATGGGTTCTTCTGCCAGGTCCAGGAGGTATTATATATCTGAGCTGGAATCGACTAACAAAATACCTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

175

Amino Acids

20.17

Weight (kDa)

5.16

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019916)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0459121
rosa_rugosa Rorug03G0033500
rosa_samantha Rh1DG011000 Rh3BG095000 Rh3CG095300 Rh3DG095100 Rh3DG095700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 395
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 1 cut(s) 48
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 1 cut(s) 476
AflII CTTAAG 1 cut(s) 170
AflIII ACRYGT 1 cut(s) 334
AjnI CCWGG 2 cut(s) 469, 475
AleI CACNNNNGTG 1 cut(s) 50
AloI GAACNNNNNNTCC 2 cut(s) 281, 313
AluBI AGCT 3 cut(s) 39, 185, 498
AluI AGCT 3 cut(s) 39, 185, 498
Alw26I GTCTC 1 cut(s) 154
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 1 cut(s) 473
AsuHPI GGTGA 2 cut(s) 193, 419
AvaII GGWCC 1 cut(s) 473
BbsI GAAGAC 3 cut(s) 237, 373, 409
BbvI GCAGC 1 cut(s) 37
BccI CCATC 4 cut(s) 4, 254, 280, 450
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 2 cut(s) 471, 477
BclI TGATCA 2 cut(s) 189, 436
BcoDI GTCTC 1 cut(s) 154
BfmI CTRYAG 2 cut(s) 23, 274
BfrI CTTAAG 1 cut(s) 170
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 2 cut(s) 471, 477
Bme18I GGWCC 1 cut(s) 473
BmgT120I GGNCC 1 cut(s) 473
BmiI GGNNCC 1 cut(s) 299
BmrFI CCNGG 2 cut(s) 471, 477
BmrI ACTGGG 1 cut(s) 24
BmsI GCATC 2 cut(s) 207, 381
BmuI ACTGGG 1 cut(s) 24
BpiI GAAGAC 3 cut(s) 237, 373, 409
BplI GAGNNNNNCTC 2 cut(s) 286, 318
BsaBI GATNNNNATC 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 304
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse1I ACTGG 2 cut(s) 30, 168
Bse3DI GCAATG 1 cut(s) 153
Bse8I GATNNNNATC 1 cut(s) 438
BseAI TCCGGA 1 cut(s) 304
BseBI CCWGG 2 cut(s) 471, 477
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 352
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 4 cut(s) 231, 252, 261, 485
BseNI ACTGG 2 cut(s) 30, 168
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 305
BslFI GGGAC 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 33
BsnI GGCC 1 cut(s) 92
Bsp13I TCCGGA 1 cut(s) 304
Bsp143I GATC 2 cut(s) 189, 436
BspACI CCGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 4 cut(s) 230, 251, 260, 486
BspEI TCCGGA 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 299
BspMAI CTGCAG 1 cut(s) 27
BspTI CTTAAG 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 153
BsrI ACTGG 2 cut(s) 30, 168
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 2 cut(s) 189, 436
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 2 cut(s) 471, 477
Bst6I CTCTTC 2 cut(s) 218, 276
BstAFI CTTAAG 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 4 cut(s) 217, 238, 247, 494
BstF5I GGATG 1 cut(s) 352
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 2 cut(s) 192, 439
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 2 cut(s) 189, 436
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 2 cut(s) 471, 477
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 469, 475
BstSFI CTRYAG 2 cut(s) 23, 274
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 3 cut(s) 237, 373, 409
BsuRI GGCC 1 cut(s) 92
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 37
CfoI GCGC 1 cut(s) 396
Cfr13I GGNCC 1 cut(s) 473
Csp6I GTAC 1 cut(s) 266
CviAII CATG 2 cut(s) 335, 443
CviJI RGCY 8 cut(s) 28, 39, 92, 119, 134, 155, 185, 498
CviKI_1 RGCY 8 cut(s) 28, 39, 92, 119, 134, 155, 185, 498
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 4 cut(s) 217, 238, 247, 494
DpnI GATC 2 cut(s) 191, 438
DpnII GATC 2 cut(s) 189, 436
Eam1104I CTCTTC 2 cut(s) 218, 276
EarI CTCTTC 2 cut(s) 218, 276
Eco130I CCWWGG 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 473
EcoRII CCWGG 2 cut(s) 469, 475
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 2 cut(s) 338, 446
FaiI YATR 7 cut(s) 43, 57, 158, 336, 444, 488, 490
FaqI GGGAC 1 cut(s) 33
FatI CATG 2 cut(s) 334, 442
FbaI TGATCA 2 cut(s) 189, 436
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 1 cut(s) 26
FspI TGCGCA 1 cut(s) 395
GlaI GCGC 1 cut(s) 395
GluI GCNGC 1 cut(s) 26
HaeIII GGCC 1 cut(s) 92
HapII CCGG 1 cut(s) 305
HhaI GCGC 1 cut(s) 396
Hin1II CATG 2 cut(s) 338, 446
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HinfI GANTC 3 cut(s) 245, 290, 502
HpaII CCGG 1 cut(s) 305
HphI GGTGA 2 cut(s) 193, 419
Hpy188I TCNGA 4 cut(s) 220, 241, 250, 495
Hpy188III TCNNGA 1 cut(s) 305
HpyCH4V TGCA 2 cut(s) 25, 373
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 4 cut(s) 217, 238, 247, 494
Hsp92II CATG 2 cut(s) 338, 446
HspAI GCGC 1 cut(s) 394
Kpn2I TCCGGA 1 cut(s) 304
Ksp22I TGATCA 2 cut(s) 189, 436
Kzo9I GATC 2 cut(s) 189, 436
LmnI GCTCC 1 cut(s) 182
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 2 cut(s) 207, 381
MalI GATC 2 cut(s) 191, 438
MboI GATC 2 cut(s) 189, 436
MboII GAAGA 6 cut(s) 205, 242, 293, 373, 414, 455
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 8 cut(s) 52, 79, 82, 144, 288, 312, 337, 473
MroI TCCGGA 1 cut(s) 304
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 2 cut(s) 50, 432
MspCI CTTAAG 1 cut(s) 170
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 2 cut(s) 471, 477
MvaI CCWGG 2 cut(s) 471, 477
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 2 cut(s) 189, 436
NlaIII CATG 2 cut(s) 338, 446
NlaIV GGNNCC 1 cut(s) 299
NmeAIII GCCGAG 1 cut(s) 49
NsbI TGCGCA 1 cut(s) 395
NspI RCATGY 1 cut(s) 338
OliI CACNNNNGTG 1 cut(s) 50
PciI ACATGT 1 cut(s) 334
PfeI GAWTC 2 cut(s) 290, 502
PfoI TCCNGGA 1 cut(s) 475
PkrI GCNGC 1 cut(s) 27
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PscI ACATGT 1 cut(s) 334
Psp6I CCWGG 2 cut(s) 469, 475
PspGI CCWGG 2 cut(s) 469, 475
PspN4I GGNNCC 1 cut(s) 299
PspPI GGNCC 1 cut(s) 473
PstI CTGCAG 1 cut(s) 27
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
RseI CAYNNNNRTG 2 cut(s) 50, 432
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 2 cut(s) 189, 436
Sau96I GGNCC 1 cut(s) 473
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 2 cut(s) 471, 477
SetI ASST 8 cut(s) 41, 187, 299, 409, 475, 484, 500, 522
SfaNI GCATC 2 cut(s) 207, 381
SfcI CTRYAG 2 cut(s) 23, 274
SinI GGWCC 1 cut(s) 473
SmiMI CAYNNNNRTG 2 cut(s) 50, 432
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SsiI CCGC 1 cut(s) 48
SspI AATATT 1 cut(s) 418
StyD4I CCNGG 2 cut(s) 469, 475
StyI CCWWGG 1 cut(s) 120
TaqI TCGA 4 cut(s) 293, 342, 384, 505
TatI WGTACW 1 cut(s) 265
TfiI GAWTC 2 cut(s) 290, 502
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 1 cut(s) 37
TseI GCWGC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 128
TspRI CASTG 1 cut(s) 37
Vha464I CTTAAG 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 473
XceI RCATGY 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.