Rh3DG095100

Golgi vesicle prefusion complex stabilization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0019916
Physical Location & Seq
Reverse (-)
7491469 .. 7491849
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG095100.1

Sequence Viewer

Length: 381 bp
ATGAGACTGGTTCTTAAGGGCAAAGGAGCTGTGATCAAAAGCATCACCGACATTCTCTTCTCAGATGAGTTAGAAGACTACTCAGACGACTCAGATGATGATGATGAAATACAGAACTACAGCGGAGAGATGGAATCGAGGTTCCCTCCGGATAGTTATTTATCTTTCAGCAAGAAACATGTCATCGAGGATGACCCAGAAAACCCCAAAGATTTGCAACAAGTCTTCGATAAGATGCGCAAAGGTAGACCTGTCATCAATATTTATTTTCACCAAGGTGATCATCATGCTAAAGAAAGATGGGTTCTTCTGCCAGGTCCAGGAGGTATTATATATCTGAGCTGGAAATCCTGGAATCGACTAACAAAATACCTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

126

Amino Acids

14.74

Weight (kDa)

5.14

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019916)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0459121
rosa_rugosa Rorug03G0033500
rosa_samantha Rh1DG011000 Rh3BG095000 Rh3CG095300 Rh3DG095100 Rh3DG095700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 239
AccI GTMKAC 1 cut(s) 247
AccIII TCCGGA 1 cut(s) 148
AciI CCGC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 320
AflII CTTAAG 1 cut(s) 14
AflIII ACRYGT 1 cut(s) 178
AjnI CCWGG 3 cut(s) 313, 319, 350
AleI CACNNNNGTG 1 cut(s) 276
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 2 cut(s) 29, 342
AluI AGCT 2 cut(s) 29, 342
Aor13HI TCCGGA 1 cut(s) 148
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 3 cut(s) 37, 263, 290
AvaII GGWCC 1 cut(s) 317
BbsI GAAGAC 2 cut(s) 81, 217
BccI CCATC 2 cut(s) 124, 294
BciT130I CCWGG 3 cut(s) 315, 321, 352
BclI TGATCA 2 cut(s) 33, 280
BfmI CTRYAG 1 cut(s) 118
BfrI CTTAAG 1 cut(s) 14
Bme1390I CCNGG 3 cut(s) 315, 321, 352
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 3 cut(s) 315, 321, 352
BmsI GCATC 2 cut(s) 51, 225
BpiI GAAGAC 2 cut(s) 81, 217
BplI GAGNNNNNCTC 2 cut(s) 130, 162
BsaJI CCNNGG 1 cut(s) 274
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 12
BseAI TCCGGA 1 cut(s) 148
BseBI CCWGG 3 cut(s) 315, 321, 352
BseDI CCNNGG 1 cut(s) 274
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 320
BseMII CTCAG 4 cut(s) 75, 96, 105, 329
BseNI ACTGG 1 cut(s) 12
BsiSI CCGG 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 320
Bsp13I TCCGGA 1 cut(s) 148
Bsp143I GATC 2 cut(s) 33, 280
BspACI CCGC 1 cut(s) 123
BspCNI CTCAG 4 cut(s) 74, 95, 104, 330
BspEI TCCGGA 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 143
BspTI CTTAAG 1 cut(s) 14
BsrI ACTGG 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 2 cut(s) 33, 280
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 3 cut(s) 315, 321, 352
Bst6I CTCTTC 1 cut(s) 62
BstAFI CTTAAG 1 cut(s) 14
BstDEI CTNAG 4 cut(s) 61, 82, 91, 338
BstF5I GGATG 1 cut(s) 196
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 2 cut(s) 36, 283
BstMBI GATC 2 cut(s) 33, 280
BstNI CCWGG 3 cut(s) 315, 321, 352
BstNSI RCATGY 1 cut(s) 182
BstSCI CCNGG 3 cut(s) 313, 319, 350
BstSFI CTRYAG 1 cut(s) 118
BstV2I GAAGAC 2 cut(s) 81, 217
BtsCI GGATG 1 cut(s) 196
CfoI GCGC 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 317
CviAII CATG 2 cut(s) 179, 287
CviJI RGCY 2 cut(s) 29, 342
CviKI_1 RGCY 2 cut(s) 29, 342
DdeI CTNAG 4 cut(s) 61, 82, 91, 338
DpnI GATC 2 cut(s) 35, 282
DpnII GATC 2 cut(s) 33, 280
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 317
EcoRII CCWGG 3 cut(s) 313, 319, 350
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 2 cut(s) 182, 290
FaiI YATR 4 cut(s) 180, 288, 332, 334
FatI CATG 2 cut(s) 178, 286
FbaI TGATCA 2 cut(s) 33, 280
FblI GTMKAC 1 cut(s) 247
FokI GGATG 1 cut(s) 203
FspI TGCGCA 1 cut(s) 239
GlaI GCGC 1 cut(s) 239
HapII CCGG 1 cut(s) 149
HhaI GCGC 1 cut(s) 240
Hin1II CATG 2 cut(s) 182, 290
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HinfI GANTC 3 cut(s) 89, 134, 355
HpaII CCGG 1 cut(s) 149
HphI GGTGA 3 cut(s) 37, 263, 290
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 4 cut(s) 64, 85, 94, 339
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 1 cut(s) 248
HpyCH4V TGCA 1 cut(s) 217
HpyF3I CTNAG 4 cut(s) 61, 82, 91, 338
Hsp92II CATG 2 cut(s) 182, 290
HspAI GCGC 1 cut(s) 238
Kpn2I TCCGGA 1 cut(s) 148
Ksp22I TGATCA 2 cut(s) 33, 280
Kzo9I GATC 2 cut(s) 33, 280
LmnI GCTCC 1 cut(s) 26
LweI GCATC 2 cut(s) 51, 225
MalI GATC 2 cut(s) 35, 282
MboI GATC 2 cut(s) 33, 280
MboII GAAGA 4 cut(s) 49, 86, 217, 299
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 4 cut(s) 132, 156, 181, 317
MroI TCCGGA 1 cut(s) 148
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 123
MspCI CTTAAG 1 cut(s) 14
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 3 cut(s) 315, 321, 352
MvaI CCWGG 3 cut(s) 315, 321, 352
NdeII GATC 2 cut(s) 33, 280
NlaIII CATG 2 cut(s) 182, 290
NlaIV GGNNCC 1 cut(s) 143
NsbI TGCGCA 1 cut(s) 239
NspI RCATGY 1 cut(s) 182
OliI CACNNNNGTG 1 cut(s) 276
PciI ACATGT 1 cut(s) 178
PfeI GAWTC 2 cut(s) 134, 355
PfoI TCCNGGA 2 cut(s) 319, 350
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PscI ACATGT 1 cut(s) 178
Psp6I CCWGG 3 cut(s) 313, 319, 350
PspGI CCWGG 3 cut(s) 313, 319, 350
PspN4I GGNNCC 1 cut(s) 143
PspPI GGNCC 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 1 cut(s) 15
Sau3AI GATC 2 cut(s) 33, 280
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 3 cut(s) 315, 321, 352
SetI ASST 9 cut(s) 31, 143, 247, 253, 280, 319, 328, 344, 375
SfaNI GCATC 2 cut(s) 51, 225
SfcI CTRYAG 1 cut(s) 118
SinI GGWCC 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
SsiI CCGC 1 cut(s) 123
SspI AATATT 1 cut(s) 262
StyD4I CCNGG 3 cut(s) 313, 319, 350
StyI CCWWGG 1 cut(s) 274
TaqI TCGA 4 cut(s) 137, 186, 228, 358
TfiI GAWTC 2 cut(s) 134, 355
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TspDTI ATGAA 1 cut(s) 120
Vha464I CTTAAG 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 317
XceI RCATGY 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.