Rh3DG218300

GMC oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0018139
Physical Location & Seq
Reverse (-)
20264628 .. 20265519
892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG218300.1

Sequence Viewer

Length: 345 bp
ATGGACAAGAAGATCTTGTCTATGGCAGGCGTAAGAGTATGTCCGATTGAGAAGGGCCGGAAATGGGAATCTCAGGATTTTCCAACAGATGTCTCCAAAATCCTGCCGACTTTTAGGATGGAGAATGAGAACTTAGGCTTTAGCTTTGGACCAAAGGATGCTATATTCCAGGGATACGAGCAAAACGATTCTTTAGCAGCAGTGGCTTGTGGGCTTGGTGGAGGTTCACTAGTACTGCAGGAGTTATGGTATCAACAGCAGTTCGTGCTAGACGGCATCCAAAATGGCCAAAGGAATGGGAAAGGAATTGGGATAATTGTGAAGCTTCTGCAGCAGCCATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GMC_oxred_C GMC_oxred_N

Protein Analysis

114

Amino Acids

12.61

Weight (kDa)

6.21

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018139)

Species Orthologous Gene IDs
pyrus_communis pycom10g15180 pycom10g15190
rosa_chinensis RchiOBHm_Chr3g0474671
rosa_multiflora Rmu_sc0001353.1_g000047 Rmu_sc0002324.1_g000028
rosa_roxburghii Rroxscaffold_6G00407000
rosa_rugosa Rorug03G0142000
rosa_samantha Rh3AG192800 Rh3BG222700 Rh3CG217400 Rh3DG218300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 286
AfaI GTAC 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 64
AhlI ACTAGT 1 cut(s) 229
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 2 cut(s) 144, 325
AluI AGCT 2 cut(s) 144, 325
Alw26I GTCTC 1 cut(s) 97
AoxI GGCC 2 cut(s) 55, 286
ApeKI GCWGC 3 cut(s) 197, 331, 334
AspS9I GGNCC 2 cut(s) 55, 149
AvaII GGWCC 1 cut(s) 149
BalI TGGCCA 1 cut(s) 288
BbvI GCAGC 1 cut(s) 209
BccI CCATC 1 cut(s) 112
BceAI ACGGC 1 cut(s) 289
BciT130I CCWGG 1 cut(s) 170
BciVI GTATCC 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 97
BcuI ACTAGT 1 cut(s) 229
BfaI CTAG 2 cut(s) 230, 269
BfmI CTRYAG 2 cut(s) 236, 329
BfuI GTATCC 1 cut(s) 167
BglII AGATCT 1 cut(s) 12
BisI GCNGC 3 cut(s) 198, 332, 335
BlsI GCNGC 3 cut(s) 199, 333, 336
BmcAI AGTACT 1 cut(s) 234
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 2 cut(s) 55, 149
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 2 cut(s) 148, 285
BsaJI CCNNGG 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 3 cut(s) 123, 163, 276
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 209
BshFI GGCC 2 cut(s) 57, 288
BsiSI CCGG 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 97
BsnI GGCC 2 cut(s) 57, 288
Bsp143I GATC 1 cut(s) 12
BspANI GGCC 2 cut(s) 57, 288
BspCNI CTCAG 1 cut(s) 85
BspMAI CTGCAG 2 cut(s) 240, 333
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 265
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 2 cut(s) 72, 133
BstF5I GGATG 3 cut(s) 123, 163, 276
BstKTI GATC 1 cut(s) 15
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 3 cut(s) 203, 265, 331
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstSFI CTRYAG 2 cut(s) 236, 329
BstV1I GCAGC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 12
BstXI CCANNNNNNTGG 1 cut(s) 296
BstYI RGATCY 1 cut(s) 12
BsuI GTATCC 1 cut(s) 167
BsuRI GGCC 2 cut(s) 57, 288
BtsCI GGATG 3 cut(s) 123, 163, 276
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 55, 149
Csp6I GTAC 1 cut(s) 233
CviAII CATG 1 cut(s) 339
CviJI RGCY 8 cut(s) 57, 138, 144, 206, 214, 288, 325, 337
CviKI_1 RGCY 8 cut(s) 57, 138, 144, 206, 214, 288, 325, 337
CviQI GTAC 1 cut(s) 233
DdeI CTNAG 2 cut(s) 72, 133
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 168
FaeI CATG 1 cut(s) 342
FaiI YATR 5 cut(s) 23, 40, 164, 247, 340
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 1 cut(s) 338
Fnu4HI GCNGC 3 cut(s) 198, 332, 335
FokI GGATG 3 cut(s) 130, 170, 263
Fsp4HI GCNGC 3 cut(s) 198, 332, 335
FspBI CTAG 2 cut(s) 230, 269
GluI GCNGC 3 cut(s) 198, 332, 335
HaeIII GGCC 2 cut(s) 57, 288
HapII CCGG 1 cut(s) 58
Hin1II CATG 1 cut(s) 342
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 2 cut(s) 68, 188
HpaII CCGG 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 46
HpyCH4V TGCA 2 cut(s) 238, 331
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 265, 331
HpyF3I CTNAG 2 cut(s) 72, 133
Hsp92II CATG 1 cut(s) 342
Kzo9I GATC 1 cut(s) 12
LpnPI CCDG 7 cut(s) 12, 59, 71, 116, 155, 182, 224
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 2 cut(s) 148, 285
MaeI CTAG 2 cut(s) 230, 269
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MboII GAAGA 1 cut(s) 22
MflI RGATCY 1 cut(s) 12
MlsI TGGCCA 1 cut(s) 288
MluCI AATT 2 cut(s) 306, 315
MluNI TGGCCA 1 cut(s) 288
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 1 cut(s) 215
Mox20I TGGCCA 1 cut(s) 288
MscI TGGCCA 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 288
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MwoI GCNNNNNNNGC 3 cut(s) 203, 265, 331
NdeII GATC 1 cut(s) 12
NlaIII CATG 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 2 cut(s) 68, 188
PkrI GCNGC 3 cut(s) 199, 333, 336
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspPI GGNCC 2 cut(s) 55, 149
PstI CTGCAG 2 cut(s) 240, 333
PsuI RGATCY 1 cut(s) 12
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
SatI GCNGC 3 cut(s) 198, 332, 335
Sau3AI GATC 1 cut(s) 12
Sau96I GGNCC 2 cut(s) 55, 149
ScaI AGTACT 1 cut(s) 234
ScrFI CCNGG 1 cut(s) 170
SetI ASST 3 cut(s) 146, 226, 327
SfaNI GCATC 2 cut(s) 148, 285
SfcI CTRYAG 2 cut(s) 236, 329
SinI GGWCC 1 cut(s) 149
SpeI ACTAGT 1 cut(s) 229
Sse9I AATT 2 cut(s) 306, 315
SspMI CTAG 2 cut(s) 230, 269
StyD4I CCNGG 1 cut(s) 168
TasI AATT 2 cut(s) 306, 315
TatI WGTACW 1 cut(s) 232
TfiI GAWTC 2 cut(s) 68, 188
TscAI CASTG 1 cut(s) 207
TseI GCWGC 3 cut(s) 197, 331, 334
TspRI CASTG 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 149
XspI CTAG 2 cut(s) 230, 269
ZrmI AGTACT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.