Rh3DG252000

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0019403
Physical Location & Seq
Reverse (-)
24825922 .. 24830075
4154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG252000.1

Sequence Viewer

Length: 258 bp
ATGGATCTACGAGGAAGTGATCAACTGGACTGGAATATTATATGCATGCATGGTCCCAAAGAATTAACATTGCGTGGAGGGTCAAGGACTCAAGTTGTTTCAATTTCCAGCAACCGTGCTGCTGCGTTTCTGCAATTGGTTAAGCTTAACAAAGCCCTTGCTGATGCAGAAACAACAATTACATTGAACCCCAAGTGGGAAAAGGTACTGTTCTCTTTCTTCAAACAAATTTCATCTGGAGTCAGCAAACGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046982 GO:0046983
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_11 TPR_2 TPR_8

Protein Analysis

85

Amino Acids

9.51

Weight (kDa)

9.89

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 228
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 3 cut(s) 102, 187, 223
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 119, 122
ApoI RAATTY 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 53
AvaII GGWCC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 106, 109
BclI TGATCA 1 cut(s) 19
BisI GCNGC 2 cut(s) 120, 123
BlsI GCNGC 2 cut(s) 121, 124
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 55
BmsI GCATC 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 2 cut(s) 30, 35
Bse3DI GCAATG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 68
BseNI ACTGG 2 cut(s) 30, 35
BseXI GCAGC 2 cut(s) 106, 109
BslFI GGGAC 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 39
Bsp143I GATC 2 cut(s) 4, 19
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 68
BsrI ACTGG 2 cut(s) 30, 35
BssMI GATC 2 cut(s) 4, 19
Bst4CI ACNGT 2 cut(s) 116, 210
BstC8I GCNNGC 1 cut(s) 47
BstKTI GATC 2 cut(s) 7, 22
BstMBI GATC 2 cut(s) 4, 19
BstNSI RCATGY 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 106, 109
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Cac8I GCNNGC 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 206
CviAII CATG 2 cut(s) 46, 50
CviJI RGCY 2 cut(s) 145, 155
CviKI_1 RGCY 2 cut(s) 145, 155
CviQI GTAC 1 cut(s) 206
DpnI GATC 2 cut(s) 6, 21
DpnII GATC 2 cut(s) 4, 19
Eco47I GGWCC 1 cut(s) 53
EcoT22I ATGCAT 2 cut(s) 47, 51
FaeI CATG 2 cut(s) 49, 53
FaiI YATR 4 cut(s) 41, 43, 47, 51
FaqI GGGAC 1 cut(s) 39
FatI CATG 2 cut(s) 45, 49
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 2 cut(s) 120, 123
Fsp4HI GCNGC 2 cut(s) 120, 123
GluI GCNGC 2 cut(s) 120, 123
GsuI CTGGAG 1 cut(s) 258
Hin1II CATG 2 cut(s) 49, 53
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 3 cut(s) 88, 240, 252
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 1 cut(s) 237
HpyCH4III ACNGT 2 cut(s) 116, 210
HpyCH4V TGCA 4 cut(s) 45, 49, 133, 167
Hsp92II CATG 2 cut(s) 49, 53
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 2 cut(s) 4, 19
LpnPI CCDG 4 cut(s) 11, 16, 121, 222
Lsp1109I GCAGC 2 cut(s) 106, 109
LweI GCATC 1 cut(s) 154
MalI GATC 2 cut(s) 6, 21
MboI GATC 2 cut(s) 4, 19
MboII GAAGA 1 cut(s) 211
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 1 cut(s) 4
MluCI AATT 5 cut(s) 62, 102, 134, 177, 228
MlyI GAGTC 2 cut(s) 82, 249
MnlI CCTC 2 cut(s) 5, 71
Mph1103I ATGCAT 2 cut(s) 47, 51
MseI TTAA 3 cut(s) 65, 141, 147
MunI CAATTG 1 cut(s) 134
NdeII GATC 2 cut(s) 4, 19
NlaIII CATG 2 cut(s) 49, 53
NlaIV GGNNCC 1 cut(s) 55
NsiI ATGCAT 2 cut(s) 47, 51
NspI RCATGY 1 cut(s) 49
PaeI GCATGC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 252
PkrI GCNGC 2 cut(s) 121, 124
PleI GAGTC 2 cut(s) 82, 248
PpsI GAGTC 2 cut(s) 82, 248
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 53
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
SaqAI TTAA 3 cut(s) 65, 141, 147
SatI GCNGC 2 cut(s) 120, 123
Sau3AI GATC 2 cut(s) 4, 19
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 2 cut(s) 82, 249
SetI ASST 2 cut(s) 147, 207
SfaNI GCATC 1 cut(s) 154
SinI GGWCC 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 90
SmoI CTYRAG 1 cut(s) 90
SphI GCATGC 1 cut(s) 49
Sse9I AATT 5 cut(s) 62, 102, 134, 177, 228
SspI AATATT 1 cut(s) 37
TaaI ACNGT 2 cut(s) 116, 210
TasI AATT 5 cut(s) 62, 102, 134, 177, 228
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 3 cut(s) 65, 141, 147
Tru9I TTAA 3 cut(s) 65, 141, 147
TseI GCWGC 2 cut(s) 119, 122
TspDTI ATGAA 1 cut(s) 222
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 1 cut(s) 228
XceI RCATGY 1 cut(s) 49
Zsp2I ATGCAT 2 cut(s) 47, 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.