Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0019962

Physical Location & Seq

Genomic Coordinates Forward (+)

28385028 .. 28417536

Gene Structure 32509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG131000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGCCCTCAAAAGCCCACACCCTCATGTCTGCATGGTCTTCTCTTCCTCCACCGACGGACCCAGATGGAGCCTGTGACACCATTTCAAAGGCAACAAGAACGGCGCCGCAAGAAACCCAGAAACACAGAAGAGGTGGAGGAAGGAGAAGGAGGAGAAGAGAGAAGGGTGAGCTGTGAAGTGGATATGATTTCGTGGTGGGAGCGCCGAGTCAAGGCCGAGATTTTAGGCAACGCAGACATCGATTCCTTCTGGAACGCTTTCAAGGATTACGAGTGCCTCGTTGACTTCATCCCCAATCTTGTTGCCAGTTCTGTCGATTGCTCTTGGAGACGAGGGATTAAGTGCAAAGAGGCGCTTTCTGTGATTCGATCTTACAAAAATCCTGCTCTGGATTTCAGCCTTTTCAAGATAGATAGTGATTATAGCTTCCTGAATATGGAATTTCAGGCTACAGATTGTTGTAGTAAATTTGAAGCTGATGCTGACAATGAGGACAGGTTTAAGCGGAGAAGCATTCTTACATGCTTTGGTGCCACTGTCAGGTTGGAATTAGTAAGAAGCTCAGGAACATTTGTTGAAATGGCTGAGGAGGCTGATTTGATACAACGAAGGCAATGTTCTGGCTTTCAATCTTTTTCAAGAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009636 GO:0009987 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042651 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055035 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

216

Amino Acids

25.11

Weight (kDa)

5.88

Isoelectric Point (pI)

60.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242481
rosa_samantha	Rh1CG079500 Rh1DG085700 Rh4AG131000 Rh6AG454400 Rh6CG330700 Rh7BG440900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	105, 533
AciI	CCGC	2 cut(s)	109, 508
AcsI	RAATTY	2 cut(s)	443, 470
AcyI	GRCGYC	1 cut(s)	106
AfiI	CCNNNNNNNGG	3 cut(s)	214, 439, 543
AgsI	TTSAA	7 cut(s)	89, 265, 409, 476, 581, 632, 642
AluBI	AGCT	4 cut(s)	174, 429, 479, 564
AluI	AGCT	4 cut(s)	174, 429, 479, 564
Alw26I	GTCTC	1 cut(s)	325
AoxI	GGCC	2 cut(s)	4, 216
ApaI	GGGCCC	1 cut(s)	8
ApoI	RAATTY	2 cut(s)	443, 470
Asp700I	GAANNNNTTC	1 cut(s)	260
AspLEI	GCGC	3 cut(s)	108, 207, 358
AspS9I	GGNCC	3 cut(s)	4, 5, 60
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	2 cut(s)	105, 533
BanII	GRGCYC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	505, 537
BbsI	GAAGAC	1 cut(s)	32
BbvCI	CCTCAGC	1 cut(s)	588
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	325
BfmI	CTRYAG	1 cut(s)	453
BfoI	RGCGCY	3 cut(s)	109, 208, 359
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	3 cut(s)	4, 5, 60
BmiI	GGNNCC	5 cut(s)	6, 62, 72, 107, 535
BmsI	GCATC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	32
Bpu10I	CCTNAGC	2 cut(s)	565, 588
Bsa29I	ATCGAT	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 439, 543
Bse1I	ACTGG	1 cut(s)	309
Bse3DI	GCAATG	1 cut(s)	623
BseCI	ATCGAT	1 cut(s)	243
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	3 cut(s)	214, 439, 543
BseMI	GCAATG	1 cut(s)	623
BseMII	CTCAG	2 cut(s)	579, 579
BseNI	ACTGG	1 cut(s)	309
BseRI	GAGGAG	2 cut(s)	168, 605
BseSI	GKGCMC	1 cut(s)	8
BshFI	GGCC	2 cut(s)	6, 218
BshNI	GGYRCC	2 cut(s)	105, 533
BshVI	ATCGAT	1 cut(s)	243
BslI	CCNNNNNNNGG	3 cut(s)	214, 439, 543
BsmAI	GTCTC	1 cut(s)	325
BsmBI	CGTCTC	1 cut(s)	325
BsmI	GAATGC	1 cut(s)	516
BsnI	GGCC	2 cut(s)	6, 218
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	371
BspACI	CCGC	2 cut(s)	109, 508
BspANI	GGCC	2 cut(s)	6, 218
BspCNI	CTCAG	2 cut(s)	578, 580
BspDI	ATCGAT	1 cut(s)	243
BspLI	GGNNCC	5 cut(s)	6, 62, 72, 107, 535
BspT107I	GGYRCC	2 cut(s)	105, 533
BsrDI	GCAATG	1 cut(s)	623
BsrI	ACTGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	371
BssNI	GRCGYC	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	541
Bst6I	CTCTTC	3 cut(s)	50, 126, 153
BstACI	GRCGYC	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	565, 588
BstF5I	GGATG	1 cut(s)	291
BstH2I	RGCGCY	3 cut(s)	109, 208, 359
BstHHI	GCGC	3 cut(s)	108, 207, 358
BstKTI	GATC	1 cut(s)	374
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	371
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNSI	RCATGY	1 cut(s)	528
BstSFI	CTRYAG	1 cut(s)	453
BstSLI	GKGCMC	1 cut(s)	8
BstV2I	GAAGAC	1 cut(s)	32
Bsu15I	ATCGAT	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	6, 218
BsuTUI	ATCGAT	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	537
CfoI	GCGC	3 cut(s)	108, 207, 358
Cfr13I	GGNCC	3 cut(s)	4, 5, 60
ClaI	ATCGAT	1 cut(s)	243
CviAII	CATG	3 cut(s)	27, 35, 525
DdeI	CTNAG	2 cut(s)	565, 588
DinI	GGCGCC	1 cut(s)	107
DpnI	GATC	1 cut(s)	373
DpnII	GATC	1 cut(s)	371
Eam1104I	CTCTTC	3 cut(s)	50, 126, 153
EarI	CTCTTC	3 cut(s)	50, 126, 153
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	8
EgeI	GGCGCC	1 cut(s)	107
EheI	GGCGCC	1 cut(s)	107
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	3 cut(s)	30, 38, 528
FaiI	YATR	7 cut(s)	28, 36, 188, 426, 440, 526, 649
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FatI	CATG	3 cut(s)	26, 34, 524
Fnu4HI	GCNGC	1 cut(s)	109
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	109
GlaI	GCGC	3 cut(s)	107, 206, 357
GluI	GCNGC	1 cut(s)	109
HaeII	RGCGCY	3 cut(s)	109, 208, 359
HaeIII	GGCC	2 cut(s)	6, 218
HhaI	GCGC	3 cut(s)	108, 207, 358
Hin1I	GRCGYC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	30, 38, 528
Hin6I	GCGC	3 cut(s)	106, 205, 356
HinP1I	GCGC	3 cut(s)	106, 205, 356
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	3 cut(s)	210, 245, 367
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188III	TCNNGA	6 cut(s)	253, 392, 409, 433, 567, 642
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	5 cut(s)	137, 143, 159, 259, 606
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4V	TGCA	2 cut(s)	34, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	2 cut(s)	565, 588
Hsp92I	GRCGYC	1 cut(s)	106
Hsp92II	CATG	3 cut(s)	30, 38, 528
HspAI	GCGC	3 cut(s)	106, 205, 356
KasI	GGCGCC	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	371
LmnI	GCTCC	2 cut(s)	70, 202
LweI	GCATC	1 cut(s)	472
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	1 cut(s)	373
MboI	GATC	1 cut(s)	371
MboII	GAAGA	4 cut(s)	32, 37, 143, 170
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	443, 470, 551
Mly113I	GGCGCC	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	528
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	2 cut(s)	342, 504
MslI	CAYNNNNRTG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	516
MwoI	GCNNNNNNNGC	1 cut(s)	593
NarI	GGCGCC	1 cut(s)	106
NdeII	GATC	1 cut(s)	371
NlaIII	CATG	3 cut(s)	30, 38, 528
NlaIV	GGNNCC	5 cut(s)	6, 62, 72, 107, 535
NmeAIII	GCCGAG	2 cut(s)	233, 244
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 279
PctI	GAATGC	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	245, 367
PkrI	GCNGC	1 cut(s)	110
PleI	GAGTC	1 cut(s)	218
PluTI	GGCGCC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	218
PspN4I	GGNNCC	5 cut(s)	6, 62, 72, 107, 535
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	3 cut(s)	4, 5, 60
RseI	CAYNNNNRTG	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	342, 504
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	1 cut(s)	371
Sau96I	GGNCC	3 cut(s)	4, 5, 60
SchI	GAGTC	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	138, 176, 431, 481, 503, 548, 566
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	453
SfoI	GGCGCC	1 cut(s)	107
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	25
Sse9I	AATT	3 cut(s)	443, 470, 551
SsiI	CCGC	2 cut(s)	109, 508
SspDI	GGCGCC	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	541
TaqI	TCGA	3 cut(s)	243, 318, 370
TasI	AATT	3 cut(s)	443, 470, 551
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	2 cut(s)	245, 367
Tru1I	TTAA	2 cut(s)	342, 504
Tru9I	TTAA	2 cut(s)	342, 504
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	280
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	2 cut(s)	443, 470
XceI	RCATGY	1 cut(s)	528
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XmnI	GAANNNNTTC	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.