Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0019962

Physical Location & Seq

Genomic Coordinates Forward (+)

63952794 .. 63971034

Gene Structure 18241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG454400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGTTAATTATGGATGTTTTTCAAGTTATCGTCTGCAACATGGTCAAGCGGACATAGTTATTGTCTCCGTTCTCCTCTTACCTATTCACGGAAGTGCAATTTTGGAAAACCAAAAAGAAGAAAAGAAGGCTACAGATCGTTGCGGTAAATTTGAAGCTGATGCTGATAATGAGGACAGGTTTAAGTGGAGAAGCATTCTTACATGCTTTGGTGCCACTGTCGGCTTGGAATTAGTAAGAAGCTCAGGAACATTTGTTGAAATGGCTGAGGAGACTGATTTGATACAACGAAGGCAGTGTTCTGACTTTCAATGTGAGGACTTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009636 GO:0009987 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042651 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055035 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

109

Amino Acids

12.39

Weight (kDa)

4.79

Isoelectric Point (pI)

32.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0019962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242481
rosa_samantha	Rh1CG079500 Rh1DG085700 Rh4AG131000 Rh6AG454400 Rh6CG330700 Rh7BG440900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	212
AciI	CCGC	2 cut(s)	50, 144
AcsI	RAATTY	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	4 cut(s)	24, 155, 260, 311
AleI	CACNNNNGTG	1 cut(s)	93
AluBI	AGCT	2 cut(s)	158, 243
AluI	AGCT	2 cut(s)	158, 243
Alw26I	GTCTC	2 cut(s)	70, 266
ApoI	RAATTY	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	212
BarI	GAAGNNNNNNTAC	2 cut(s)	184, 216
BbvCI	CCTCAGC	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	70, 266
BfmI	CTRYAG	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	214
BmsI	GCATC	1 cut(s)	151
Bpu10I	CCTNAGC	2 cut(s)	244, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	2 cut(s)	258, 258
BseRI	GAGGAG	2 cut(s)	65, 284
BshNI	GGYRCC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	70, 266
BsmI	GAATGC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	2 cut(s)	50, 144
BspCNI	CTCAG	2 cut(s)	257, 259
BspLI	GGNNCC	1 cut(s)	214
BspT107I	GGYRCC	1 cut(s)	212
BssMI	GATC	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	244, 267
BstF5I	GGATG	1 cut(s)	20
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	2 cut(s)	70, 266
BstMBI	GATC	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	20
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	2 cut(s)	216, 302
CviAII	CATG	2 cut(s)	41, 204
CviJI	RGCY	5 cut(s)	131, 158, 225, 243, 266
CviKI_1	RGCY	5 cut(s)	131, 158, 225, 243, 266
DdeI	CTNAG	2 cut(s)	244, 267
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
FaeI	CATG	2 cut(s)	44, 207
FaiI	YATR	4 cut(s)	12, 42, 56, 205
FatI	CATG	2 cut(s)	40, 203
FokI	GGATG	1 cut(s)	27
Hin1II	CATG	2 cut(s)	44, 207
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	1 cut(s)	246
HpyAV	CCTTC	2 cut(s)	121, 285
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	2 cut(s)	37, 98
HpyF3I	CTNAG	2 cut(s)	244, 267
Hsp92II	CATG	2 cut(s)	44, 207
Kzo9I	GATC	1 cut(s)	136
LpnPI	CCDG	2 cut(s)	163, 231
LweI	GCATC	1 cut(s)	151
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	1 cut(s)	131
MluCI	AATT	4 cut(s)	7, 99, 149, 230
MnlI	CCTC	4 cut(s)	86, 166, 262, 310
MseI	TTAA	2 cut(s)	6, 183
MslI	CAYNNNNRTG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	195
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	2 cut(s)	44, 207
NlaIV	GGNNCC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	207
OliI	CACNNNNGTG	1 cut(s)	93
PctI	GAATGC	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	6, 183
Sau3AI	GATC	1 cut(s)	136
SetI	ASST	4 cut(s)	85, 160, 182, 245
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	132
SgeI	CNNG	8 cut(s)	36, 53, 59, 101, 190, 216, 238, 258
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	4 cut(s)	7, 99, 149, 230
SsiI	CCGC	2 cut(s)	50, 144
TaaI	ACNGT	1 cut(s)	220
TasI	AATT	4 cut(s)	7, 99, 149, 230
Tru1I	TTAA	2 cut(s)	6, 183
Tru9I	TTAA	2 cut(s)	6, 183
TscAI	CASTG	2 cut(s)	223, 302
TspGWI	ACGGA	2 cut(s)	58, 105
TspRI	CASTG	2 cut(s)	223, 302
XapI	RAATTY	1 cut(s)	149
XceI	RCATGY	1 cut(s)	207
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.