Rh5BG479100

Potassium transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
76189930 .. 76193933
4004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG479100.1

Sequence Viewer

Length: 1704 bp
ATGGCAATTGGTGATGGTGTACTCACTCCTTCAATATCAGTTCTTTCAGCAGTGTCAGGGGTAAAGCTTAAGTTCACAGAACTCCATGACAATTATGTTGTTATCATCTCATGTGTCTTGCTGGTGGGGCTTTTCTCCCTTCAGCATCACGGAACACACAGAGTGGCTTTCATGTTTGCTCCAATCATTACTGCATGGCTTCTGTGCATTAGTGGCATTGGAATATACAACATAGTTCAGTGGAATCAATGCATATTTCAAGCACTCTCTCCAGTTTACATGTTGAAGTTCCTTCAAACGACAGGCATTGAAGGATGGCTATCGTTAGCTGGTGTTGTTCTTTCAATAACAGGTGTAGAGGCAATGTTTGCTAATTTGGGCCATTTCTCTTCACTCTCGATAAAGATAGCCTTCACATGTTTAGTATATCCCTCTCTTGTTCTTTCCTACATGGGTGAGGCTGCATTTCTTTCCAAGCACCATGAAGACATCCAAAGAAGTTTCTACAAATCCATACCAGAAGCTGTGTTTTGGCCGGTGTTCATACTCGCTAGTTTTGCATCTGTGGTAGGAAGCCAGGCAGTAATTTCAGCTACCTTCTCCATTATAAGCCAGTGTTCTGCGCTGAATTGCTTTCCACGCGTCAAGATAGTTCATACTTCGAGTAAAATATACGGGCAAATATACATTCCAGAAGTCAATTGGATGTTAATGTGCCTTTGTTTAGCTGTGACAATTGGATTGAGGGATACTAATATGATGGGTCATGCATATGGGTTGGCAGTGACCACTGTAATGTTTGTGACAACTTGCTTGATGGCTCTGGTGATGATAATTGTCTGGAAAGAAAGGGTAGTTAGTGCATTAGCATTTTTACTGTTCTTTGGATCAATTGAGTTGATTTATATTTCATCATCTGTCACGAAGATCCCCGAAGGTGGATGGATCCCGGTTCTGCTGTCTCTTGTCTTTGTGGCTATAATGTACACTTGGAACTACGGGACAATGATGAAACACCAATTTGATGTTGAGAACAAGGTCTCAATTAACCGAATAGTGTGCTTAGGGCCTAGTCTGGGCATGGTTCGTGTCTCCGGAATTGGACTTGTGTACACTAATTTGGTGACTGGGGTACCAGCTGTTTTCGGACACTTTGTCACTAATCTACCTGCATTCCATAAGGTGCTGATTTTTGTTTGTGTCAAATCAGTTCAAGTTCCCCATGTTAGTGGAAAGGAAAGGTTGATCATTAGTAGGGTTGGCCCGAAGGAGTGTGGCATGTTCCGGTGCATTGTGAGGTATGGTTACAAGGATCTTCAACAGGAAAACTGTAATTTCGAGAATAAGTTGGTGTCTGGTATAGTGCAGTTTGTAGAAACAGAAGACTGTCCTGATGCTGAAGCCTTTTATGCCCCGGATGATCCGGATCAGACTTCCGTGGAGTTGAAGAATGAAGAAAACACGATACAAGTTTCACGTAATCTTCAAGATGAGTCACTGCAGATATTAGAAGCCAAAGAATCTGGAGTGACTTATATTCTTGGGCATTCACATGCAAAGGCGAAGAAATCAGCATCCTTTATCAAGAAAGTTGCTATAGATATTGTGTATAATTTTCTGTGCAAGAATTGTAGAGAGCCTGATGTTGTGTTGAATGTGCCTCCTACTTCTTTGCTAGAAGTAGGTATGGTTTACTATGTTTAA

Protein Analysis

567

Amino Acids

62.69

Weight (kDa)

6.92

Isoelectric Point (pI)

29.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K_trans PF02705 1 - 352 1.7e-123 K+ potassium transporter integral membrane domain
K_trans_C PF22776 365 - 565 1.4e-25 K+ potassium transporter C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014564)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30070 AT2G30070
fragaria_vesca FvH4_3g39040
malus_domestica MD11G1069200.v1.1
prunus_persica Prupe.6G054100_v2.0.a1 Prupe.6G054100_v2.0.a1
pyrus_communis pycom11g05770
rosa_chinensis RchiOBHm_Chr5g0070351
rosa_laevigata RLG00000036127
rosa_multiflora Rmu_sc0007961.1_g000020
rosa_roxburghii Rroxscaffold_1G00010830
rosa_rugosa Rorug05G0405200
rosa_samantha Rh5AG460800 Rh5BG479100 Rh5CG503300 Rh5DG491000
rosa_wichuraiana Rw5G042950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 608
Acc36I ACCTGC 1 cut(s) 1177
Acc65I GGTACC 1 cut(s) 1132
AccB1I GGYRCC 1 cut(s) 1132
AccII CGCG 1 cut(s) 642
AccIII TCCGGA 2 cut(s) 1094, 1423
AclWI GGATC 7 cut(s) 895, 922, 940, 953, 1320, 1415, 1434
AcoI YGGCCR 1 cut(s) 533
AcuI CTGAAG 2 cut(s) 125, 1419
AdeI CACNNNGTG 1 cut(s) 163
AfaI GTAC 4 cut(s) 21, 986, 1112, 1134
AfiI CCNNNNNNNGG 2 cut(s) 938, 1076
AflII CTTAAG 1 cut(s) 68
AflIII ACRYGT 3 cut(s) 279, 416, 640
AhdI GACNNNNNGTC 1 cut(s) 1154
AjnI CCWGG 1 cut(s) 576
AluBI AGCT 6 cut(s) 67, 329, 524, 593, 728, 1139
AluI AGCT 6 cut(s) 67, 329, 524, 593, 728, 1139
Alw26I GTCTC 3 cut(s) 966, 1045, 1096
AlwI GGATC 7 cut(s) 895, 922, 940, 953, 1320, 1415, 1434
AlwNI CAGNNNCTG 1 cut(s) 524
Aor13HI TCCGGA 2 cut(s) 1094, 1423
AoxI GGCC 4 cut(s) 379, 533, 1067, 1261
ApeKI GCWGC 1 cut(s) 461
Asp718I GGTACC 1 cut(s) 1132
AspLEI GCGC 1 cut(s) 625
AspS9I GGNCC 3 cut(s) 379, 1067, 1262
AsuC2I CCSGG 2 cut(s) 950, 1415
AsuHPI GGTGA 4 cut(s) 23, 467, 838, 1135
BaeI ACNNNNGTAYC 2 cut(s) 1116, 1149
BamHI GGATCC 1 cut(s) 945
BanI GGYRCC 1 cut(s) 1132
BbsI GAAGAC 2 cut(s) 492, 1389
BbvI GCAGC 1 cut(s) 448
BccI CCATC 5 cut(s) 8, 309, 754, 811, 936
BcgI CGANNNNNNTGC 2 cut(s) 1041, 1075
BciT130I CCWGG 1 cut(s) 578
BciVI GTATCC 1 cut(s) 742
BclI TGATCA 1 cut(s) 1245
BcnI CCSGG 2 cut(s) 950, 1415
BcoDI GTCTC 3 cut(s) 966, 1045, 1096
BfaI CTAG 3 cut(s) 552, 1071, 1676
BfmI CTRYAG 2 cut(s) 1499, 1596
BfrI CTTAAG 1 cut(s) 68
BfuAI ACCTGC 1 cut(s) 1177
BfuI GTATCC 1 cut(s) 742
BisI GCNGC 1 cut(s) 462
BlsI GCNGC 1 cut(s) 463
Bme1390I CCNGG 3 cut(s) 578, 950, 1415
BmeRI GACNNNNNGTC 1 cut(s) 1154
BmgT120I GGNCC 3 cut(s) 379, 1067, 1262
BmiI GGNNCC 2 cut(s) 947, 1134
BmrFI CCNGG 3 cut(s) 578, 950, 1415
BmrI ACTGGG 1 cut(s) 1137
BmsI GCATC 4 cut(s) 154, 569, 1384, 1583
BmuI ACTGGG 1 cut(s) 1137
BpiI GAAGAC 2 cut(s) 492, 1389
BpmI CTGGAG 2 cut(s) 255, 1545
Bpu10I CCTNAGC 1 cut(s) 1063
BpuMI CCSGG 2 cut(s) 950, 1415
BsaAI YACGTR 1 cut(s) 1478
BsaBI GATNNNNATC 2 cut(s) 319, 1425
BsaI GGTCTC 1 cut(s) 1045
BsaJI CCNNGG 2 cut(s) 1413, 1437
BsaWI WCCGGW 3 cut(s) 1094, 1284, 1423
Bsc4I CCNNNNNNNGG 2 cut(s) 938, 1076
Bse118I RCCGGY 1 cut(s) 535
Bse1I ACTGG 3 cut(s) 272, 613, 1132
Bse3DI GCAATG 1 cut(s) 369
Bse8I GATNNNNATC 2 cut(s) 319, 1425
BseAI TCCGGA 2 cut(s) 1094, 1423
BseBI CCWGG 1 cut(s) 578
BseDI CCNNGG 2 cut(s) 1413, 1437
BseGI GGATG 6 cut(s) 320, 489, 711, 947, 1423, 1574
BseJI GATNNNNATC 2 cut(s) 319, 1425
BseLI CCNNNNNNNGG 2 cut(s) 938, 1076
BseMI GCAATG 1 cut(s) 369
BseNI ACTGG 3 cut(s) 272, 613, 1132
BseXI GCAGC 1 cut(s) 448
BsgI GTGCAG 1 cut(s) 1385
Bsh1236I CGCG 1 cut(s) 642
BshFI GGCC 4 cut(s) 381, 535, 1069, 1263
BshNI GGYRCC 1 cut(s) 1132
BsiSI CCGG 6 cut(s) 536, 950, 1095, 1285, 1415, 1424
BslFI GGGAC 1 cut(s) 1015
BslI CCNNNNNNNGG 2 cut(s) 938, 1076
BsmAI GTCTC 3 cut(s) 966, 1045, 1096
BsmFI GGGAC 1 cut(s) 1015
BsmI GAATGC 2 cut(s) 1172, 1546
BsnI GGCC 4 cut(s) 381, 535, 1069, 1263
Bso31I GGTCTC 1 cut(s) 1045
Bsp13I TCCGGA 2 cut(s) 1094, 1423
Bsp1407I TGTACA 2 cut(s) 984, 1110
Bsp143I GATC 7 cut(s) 887, 927, 945, 1245, 1312, 1420, 1426
BspANI GGCC 4 cut(s) 381, 535, 1069, 1263
BspEI TCCGGA 2 cut(s) 1094, 1423
BspFNI CGCG 1 cut(s) 642
BspLI GGNNCC 2 cut(s) 947, 1134
BspMAI CTGCAG 1 cut(s) 1503
BspMI ACCTGC 1 cut(s) 1177
BspPI GGATC 7 cut(s) 895, 922, 940, 953, 1320, 1415, 1434
BspT107I GGYRCC 1 cut(s) 1132
BspTI CTTAAG 1 cut(s) 68
BspTNI GGTCTC 1 cut(s) 1045
BsrDI GCAATG 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 535
BsrGI TGTACA 2 cut(s) 984, 1110
BsrI ACTGG 3 cut(s) 272, 613, 1132
BssAI RCCGGY 1 cut(s) 535
BssECI CCNNGG 2 cut(s) 1413, 1437
BssMI GATC 7 cut(s) 887, 927, 945, 1245, 1312, 1420, 1426
Bst2UI CCWGG 1 cut(s) 578
Bst4CI ACNGT 4 cut(s) 793, 879, 1331, 1388
Bst6I CTCTTC 1 cut(s) 394
BstAFI CTTAAG 1 cut(s) 68
BstAPI GCANNNNNTGC 1 cut(s) 368
BstAUI TGTACA 2 cut(s) 984, 1110
BstBAI YACGTR 1 cut(s) 1478
BstDEI CTNAG 1 cut(s) 1063
BstDSI CCRYGG 1 cut(s) 1437
BstF5I GGATG 6 cut(s) 320, 489, 711, 947, 1423, 1574
BstFNI CGCG 1 cut(s) 642
BstHHI GCGC 1 cut(s) 625
BstKTI GATC 7 cut(s) 890, 930, 948, 1248, 1315, 1423, 1429
BstMAI GTCTC 3 cut(s) 966, 1045, 1096
BstMBI GATC 7 cut(s) 887, 927, 945, 1245, 1312, 1420, 1426
BstMWI GCNNNNNNNGC 6 cut(s) 127, 213, 368, 557, 639, 1409
BstNI CCWGG 1 cut(s) 578
BstNSI RCATGY 4 cut(s) 283, 420, 1282, 1556
BstSCI CCNGG 3 cut(s) 576, 948, 1413
BstSFI CTRYAG 2 cut(s) 1499, 1596
BstUI CGCG 1 cut(s) 642
BstV1I GCAGC 1 cut(s) 448
BstV2I GAAGAC 2 cut(s) 492, 1389
BstX2I RGATCY 3 cut(s) 927, 945, 1312
BstXI CCANNNNNNTGG 1 cut(s) 1229
BstYI RGATCY 3 cut(s) 927, 945, 1312
BsuI GTATCC 1 cut(s) 742
BsuRI GGCC 4 cut(s) 381, 535, 1069, 1263
BtgI CCRYGG 1 cut(s) 1437
BtsCI GGATG 6 cut(s) 320, 489, 711, 947, 1423, 1574
BtsI GCAGTG 3 cut(s) 57, 789, 1496
BtsIMutI CAGTG 6 cut(s) 57, 245, 620, 789, 789, 1496
BveI ACCTGC 1 cut(s) 1177
CaiI CAGNNNCTG 1 cut(s) 524
CfoI GCGC 1 cut(s) 625
Cfr10I RCCGGY 1 cut(s) 535
Cfr13I GGNCC 3 cut(s) 379, 1067, 1262
CseI GACGC 1 cut(s) 631
Csp6I GTAC 4 cut(s) 20, 985, 1111, 1133
CviQI GTAC 4 cut(s) 20, 985, 1111, 1133
DdeI CTNAG 1 cut(s) 1063
DpnI GATC 7 cut(s) 889, 929, 947, 1247, 1314, 1422, 1428
DpnII GATC 7 cut(s) 887, 927, 945, 1245, 1312, 1420, 1426
DraIII CACNNNGTG 1 cut(s) 163
DriI GACNNNNNGTC 1 cut(s) 1154
EaeI YGGCCR 1 cut(s) 533
Eam1104I CTCTTC 1 cut(s) 394
Eam1105I GACNNNNNGTC 1 cut(s) 1154
EarI CTCTTC 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 1045
Eco57I CTGAAG 2 cut(s) 125, 1419
EcoO109I RGGNCCY 1 cut(s) 1067
EcoRII CCWGG 1 cut(s) 576
EcoT22I ATGCAT 2 cut(s) 254, 772
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FaqI GGGAC 1 cut(s) 1015
FauNDI CATATG 1 cut(s) 772
FbaI TGATCA 1 cut(s) 1245
Fnu4HI GCNGC 1 cut(s) 462
FokI GGATG 6 cut(s) 327, 476, 718, 954, 1430, 1561
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 3 cut(s) 552, 1071, 1676
GlaI GCGC 1 cut(s) 624
GluI GCNGC 1 cut(s) 462
GsuI CTGGAG 2 cut(s) 255, 1545
HaeIII GGCC 4 cut(s) 381, 535, 1069, 1263
HapII CCGG 6 cut(s) 536, 950, 1095, 1285, 1415, 1424
HgaI GACGC 1 cut(s) 631
HhaI GCGC 1 cut(s) 625
Hin6I GCGC 1 cut(s) 623
HinP1I GCGC 1 cut(s) 623
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 3 cut(s) 244, 1493, 1520
HpaII CCGG 6 cut(s) 536, 950, 1095, 1285, 1415, 1424
HphI GGTGA 4 cut(s) 23, 467, 838, 1135
Hpy166II GTNNAC 7 cut(s) 20, 75, 277, 987, 1111, 1113, 1693
Hpy188I TCNGA 2 cut(s) 1148, 1431
Hpy8I GTNNAC 7 cut(s) 20, 75, 277, 987, 1111, 1113, 1693
HpyAV CCTTC 8 cut(s) 39, 149, 302, 305, 421, 607, 929, 1261
HpyCH4III ACNGT 4 cut(s) 793, 879, 1331, 1388
HpyCH4IV ACGT 1 cut(s) 1477
HpyF10VI GCNNNNNNNGC 6 cut(s) 127, 213, 368, 557, 639, 1409
HpyF3I CTNAG 1 cut(s) 1063
HpySE526I ACGT 1 cut(s) 1477
HspAI GCGC 1 cut(s) 623
Kpn2I TCCGGA 2 cut(s) 1094, 1423
KpnI GGTACC 1 cut(s) 1136
Ksp22I TGATCA 1 cut(s) 1245
Kzo9I GATC 7 cut(s) 887, 927, 945, 1245, 1312, 1420, 1426
LmnI GCTCC 1 cut(s) 184
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 4 cut(s) 154, 569, 1384, 1583
MaeI CTAG 3 cut(s) 552, 1071, 1676
MaeII ACGT 1 cut(s) 1477
MaeIII GTNAC 9 cut(s) 730, 784, 802, 919, 1123, 1156, 1304, 1494, 1528
MalI GATC 7 cut(s) 889, 929, 947, 1247, 1314, 1422, 1428
MboI GATC 7 cut(s) 887, 927, 945, 1245, 1312, 1420, 1426
MboII GAAGA 9 cut(s) 381, 497, 937, 1307, 1394, 1459, 1466, 1475, 1576
MfeI CAATTG 4 cut(s) 6, 700, 735, 891
MflI RGATCY 3 cut(s) 927, 945, 1312
MluI ACGCGT 1 cut(s) 640
MlyI GAGTC 1 cut(s) 1502
MnlI CCTC 6 cut(s) 352, 442, 451, 738, 1290, 1671
Mph1103I ATGCAT 2 cut(s) 254, 772
MroI TCCGGA 2 cut(s) 1094, 1423
MseI TTAA 4 cut(s) 69, 710, 1047, 1702
MslI CAYNNNNRTG 4 cut(s) 771, 794, 1227, 1551
MspA1I CMGCKG 1 cut(s) 1139
MspCI CTTAAG 1 cut(s) 68
MspI CCGG 6 cut(s) 536, 950, 1095, 1285, 1415, 1424
MspR9I CCNGG 3 cut(s) 578, 950, 1415
MunI CAATTG 4 cut(s) 6, 700, 735, 891
Mva1269I GAATGC 2 cut(s) 1172, 1546
MvaI CCWGG 1 cut(s) 578
MvnI CGCG 1 cut(s) 642
MwoI GCNNNNNNNGC 6 cut(s) 127, 213, 368, 557, 639, 1409
NciI CCSGG 2 cut(s) 950, 1415
NdeI CATATG 1 cut(s) 772
NdeII GATC 7 cut(s) 887, 927, 945, 1245, 1312, 1420, 1426
NlaIV GGNNCC 2 cut(s) 947, 1134
NmuCI GTSAC 8 cut(s) 730, 784, 802, 919, 1123, 1156, 1494, 1528
NsiI ATGCAT 2 cut(s) 254, 772
NspI RCATGY 4 cut(s) 283, 420, 1282, 1556
PciI ACATGT 2 cut(s) 279, 416
PctI GAATGC 2 cut(s) 1172, 1546
PfeI GAWTC 2 cut(s) 244, 1520
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 1 cut(s) 1501
PpsI GAGTC 1 cut(s) 1501
Ppu21I YACGTR 1 cut(s) 1478
PscI ACATGT 2 cut(s) 279, 416
PsiI TTATAA 1 cut(s) 608
Psp6I CCWGG 1 cut(s) 576
PspGI CCWGG 1 cut(s) 576
PspN4I GGNNCC 2 cut(s) 947, 1134
PspPI GGNCC 3 cut(s) 379, 1067, 1262
PstI CTGCAG 1 cut(s) 1503
PstNI CAGNNNCTG 1 cut(s) 524
PsuI RGATCY 3 cut(s) 927, 945, 1312
PvuII CAGCTG 1 cut(s) 1139
RsaI GTAC 4 cut(s) 21, 986, 1112, 1134
RsaNI GTAC 4 cut(s) 20, 985, 1111, 1133
RseI CAYNNNNRTG 4 cut(s) 771, 794, 1227, 1551
SaqAI TTAA 4 cut(s) 69, 710, 1047, 1702
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 7 cut(s) 887, 927, 945, 1245, 1312, 1420, 1426
Sau96I GGNCC 3 cut(s) 379, 1067, 1262
SchI GAGTC 1 cut(s) 1502
ScrFI CCNGG 3 cut(s) 578, 950, 1415
SfaNI GCATC 4 cut(s) 154, 569, 1384, 1583
SfcI CTRYAG 2 cut(s) 1499, 1596
SmiMI CAYNNNNRTG 4 cut(s) 771, 794, 1227, 1551
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SspMI CTAG 3 cut(s) 552, 1071, 1676
StyD4I CCNGG 3 cut(s) 576, 948, 1413
TaaI ACNGT 4 cut(s) 793, 879, 1331, 1388
TaiI ACGT 1 cut(s) 1480
TaqI TCGA 3 cut(s) 398, 662, 1338
TatI WGTACW 3 cut(s) 19, 984, 1110
TfiI GAWTC 2 cut(s) 244, 1520
Tru1I TTAA 4 cut(s) 69, 710, 1047, 1702
Tru9I TTAA 4 cut(s) 69, 710, 1047, 1702
TscAI CASTG 6 cut(s) 57, 245, 620, 789, 796, 1503
TseFI GTSAC 8 cut(s) 730, 784, 802, 919, 1123, 1156, 1494, 1528
TseI GCWGC 1 cut(s) 461
Tsp45I GTSAC 8 cut(s) 730, 784, 802, 919, 1123, 1156, 1494, 1528
TspDTI ATGAA 7 cut(s) 160, 498, 532, 644, 900, 1025, 1467
TspGWI ACGGA 2 cut(s) 165, 1426
TspRI CASTG 6 cut(s) 57, 245, 620, 789, 796, 1503
Vha464I CTTAAG 1 cut(s) 68
XceI RCATGY 4 cut(s) 283, 420, 1282, 1556
XcmI CCANNNNNNNNNTGG 1 cut(s) 699
XspI CTAG 3 cut(s) 552, 1071, 1676
Zsp2I ATGCAT 2 cut(s) 254, 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.