Rh5DG408200

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0019211
Physical Location & Seq
Reverse (-)
64635554 .. 64636123
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG408200.1

Sequence Viewer

Length: 570 bp
ATGGCCTTGGCCAGTGACTACTGGAAAGTGGTGGGCGACACTTGCTGCTATACATATCTTGAGGGCATTACCGAACCTGAAAACCAGTTGCTACGGACTATGTTCTTGATGGATTTGAAGTCCACAATCAGACGCCTCCACTCTGGTGATGTTCAGGAGGAAGAAATCATAGCAGACAACGTCCGGATTAGCGAGAACCAGGACTCCATTGAACTCCAGTATAACCCCAATGAAAAGTTCCTTCGAGACTTGCAAGGTGTTGCTCTATCCAAGAAGCTTCAAGAGCTGCAAGTTCCGATTGAGGCTCGTAGCTCCTTGGTGGATACCATAATGTTCAAGGCCTCTGACACTGAATGGAAATATCAAGCTAGCCGCAAGATTTTGCGAATGAGGGTAGAGGTTGATCTCTATGTTATTGATGATGACACAGATGGTGACGATGGTACTATTGATGATTATGGTGTGGCTAGGTTTGTGCCGGCAAGTGCACTGCCCATTGAGAAACTCGGGAGGACCAGAGCCGAAGTGCCATCGACAAGCTACTCTCATGCCTTGTTCACATCTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

189

Amino Acids

21.52

Weight (kDa)

4.61

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019211)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21620
rosa_laevigata RLG00000035223
rosa_multiflora Rmu_sc0000367.1_g000123
rosa_roxburghii Rroxscaffold_1G00022070
rosa_rugosa Rorug05G0315000
rosa_samantha Rh5CG417200 Rh5DG408200
rosa_wichuraiana Rw5G035940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 568
AccIII TCCGGA 1 cut(s) 183
AciI CCGC 1 cut(s) 373
AcoI YGGCCR 1 cut(s) 9
AcyI GRCGYC 1 cut(s) 133
AfaI GTAC 1 cut(s) 445
AgsI TTSAA 4 cut(s) 118, 212, 281, 337
AjnI CCWGG 1 cut(s) 198
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AleI CACNNNNGTG 1 cut(s) 144
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 5 cut(s) 277, 286, 312, 368, 540
AluI AGCT 5 cut(s) 277, 286, 312, 368, 540
Alw21I GWGCWC 1 cut(s) 490
Alw26I GTCTC 1 cut(s) 240
Alw44I GTGCAC 1 cut(s) 486
Ama87I CYCGRG 1 cut(s) 506
Aor13HI TCCGGA 1 cut(s) 183
AoxI GGCC 3 cut(s) 3, 9, 339
ApaLI GTGCAC 1 cut(s) 486
ApeKI GCWGC 2 cut(s) 45, 286
AspS9I GGNCC 1 cut(s) 513
AsuHPI GGTGA 2 cut(s) 158, 446
AsuNHI GCTAGC 1 cut(s) 368
AvaI CYCGRG 1 cut(s) 506
AvaII GGWCC 1 cut(s) 513
BaeGI GKGCMC 1 cut(s) 490
BalI TGGCCA 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 490
BbvI GCAGC 2 cut(s) 32, 273
BccI CCATC 4 cut(s) 103, 425, 434, 538
BciT130I CCWGG 1 cut(s) 200
BciVI GTATCC 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 2 cut(s) 369, 468
BfuI GTATCC 1 cut(s) 316
BisI GCNGC 3 cut(s) 46, 287, 373
BlsI GCNGC 3 cut(s) 47, 288, 374
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 513
BmeT110I CYCGRG 1 cut(s) 506
BmgT120I GGNCC 1 cut(s) 513
BmrFI CCNGG 1 cut(s) 200
BmtI GCTAGC 1 cut(s) 372
BpmI CTGGAG 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 80
BsaHI GRCGYC 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 6, 315
BsaWI WCCGGW 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bse118I RCCGGY 1 cut(s) 478
Bse1I ACTGG 4 cut(s) 12, 26, 85, 217
BseAI TCCGGA 1 cut(s) 183
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 6, 315
BseNI ACTGG 4 cut(s) 12, 26, 85, 217
BseSI GKGCMC 1 cut(s) 490
BseXI GCAGC 2 cut(s) 32, 273
BshFI GGCC 3 cut(s) 5, 11, 341
BsiHKAI GWGCWC 1 cut(s) 490
BsiHKCI CYCGRG 1 cut(s) 506
BsiSI CCGG 2 cut(s) 184, 479
BsmAI GTCTC 1 cut(s) 240
BsnI GGCC 3 cut(s) 5, 11, 341
BsoBI CYCGRG 1 cut(s) 506
Bsp1286I GDGCHC 1 cut(s) 490
Bsp13I TCCGGA 1 cut(s) 183
Bsp143I GATC 1 cut(s) 403
BspACI CCGC 1 cut(s) 373
BspANI GGCC 3 cut(s) 5, 11, 341
BspEI TCCGGA 1 cut(s) 183
BspOI GCTAGC 1 cut(s) 372
BsrFI RCCGGY 1 cut(s) 478
BsrI ACTGG 4 cut(s) 12, 26, 85, 217
BssAI RCCGGY 1 cut(s) 478
BssECI CCNNGG 2 cut(s) 6, 315
BssMI GATC 1 cut(s) 403
BssNI GRCGYC 1 cut(s) 133
BssT1I CCWWGG 2 cut(s) 6, 315
Bst2UI CCWGG 1 cut(s) 200
BstACI GRCGYC 1 cut(s) 133
BstC8I GCNNGC 2 cut(s) 370, 480
BstKTI GATC 1 cut(s) 406
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 2 cut(s) 42, 283
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 490
BstV1I GCAGC 2 cut(s) 32, 273
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 3 cut(s) 5, 11, 341
BtsI GCAGTG 1 cut(s) 488
BtsIMutI CAGTG 3 cut(s) 19, 348, 488
Cac8I GCNNGC 2 cut(s) 370, 480
Cfr10I RCCGGY 1 cut(s) 478
Cfr13I GGNCC 1 cut(s) 513
CseI GACGC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 444
CviAII CATG 1 cut(s) 548
CviQI GTAC 1 cut(s) 444
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 9
Eco130I CCWWGG 2 cut(s) 6, 315
Eco147I AGGCCT 1 cut(s) 341
Eco47I GGWCC 1 cut(s) 513
Eco88I CYCGRG 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 2 cut(s) 6, 315
ErhI CCWWGG 2 cut(s) 6, 315
FaeI CATG 1 cut(s) 551
FatI CATG 1 cut(s) 547
Fnu4HI GCNGC 3 cut(s) 46, 287, 373
Fsp4HI GCNGC 3 cut(s) 46, 287, 373
FspBI CTAG 2 cut(s) 369, 468
GluI GCNGC 3 cut(s) 46, 287, 373
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 3 cut(s) 5, 11, 341
HapII CCGG 2 cut(s) 184, 479
HgaI GACGC 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 133
Hin1II CATG 1 cut(s) 551
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 1 cut(s) 203
HpaII CCGG 2 cut(s) 184, 479
HphI GGTGA 2 cut(s) 158, 446
Hpy166II GTNNAC 3 cut(s) 123, 488, 558
Hpy188I TCNGA 3 cut(s) 131, 297, 346
Hpy188III TCNNGA 7 cut(s) 59, 106, 155, 184, 245, 281, 508
Hpy8I GTNNAC 3 cut(s) 123, 488, 558
HpyAV CCTTC 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 3 cut(s) 253, 289, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 283
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 133
Hsp92II CATG 1 cut(s) 551
Kpn2I TCCGGA 1 cut(s) 183
KroI GCCGGC 1 cut(s) 478
KroNI GCCGGC 1 cut(s) 480
Kzo9I GATC 1 cut(s) 403
LmnI GCTCC 1 cut(s) 317
Lsp1109I GCAGC 2 cut(s) 32, 273
MaeI CTAG 2 cut(s) 369, 468
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 14, 434
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 490
MlsI TGGCCA 1 cut(s) 11
MluNI TGGCCA 1 cut(s) 11
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 8 cut(s) 55, 146, 151, 295, 352, 384, 391, 504
Mox20I TGGCCA 1 cut(s) 11
MroI TCCGGA 1 cut(s) 183
MroNI GCCGGC 1 cut(s) 478
MscI TGGCCA 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 144
Msp20I TGGCCA 1 cut(s) 11
MspI CCGG 2 cut(s) 184, 479
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 42, 283
NaeI GCCGGC 1 cut(s) 480
NdeII GATC 1 cut(s) 403
NgoMIV GCCGGC 1 cut(s) 478
NheI GCTAGC 1 cut(s) 368
NlaIII CATG 1 cut(s) 551
NmuCI GTSAC 2 cut(s) 14, 434
OliI CACNNNNGTG 1 cut(s) 144
PceI AGGCCT 1 cut(s) 341
PdiI GCCGGC 1 cut(s) 480
PflFI GACNNNGTC 1 cut(s) 179
PkrI GCNGC 3 cut(s) 47, 288, 374
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PsiI TTATAA 1 cut(s) 568
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspPI GGNCC 1 cut(s) 513
PsyI GACNNNGTC 1 cut(s) 179
RsaI GTAC 1 cut(s) 445
RsaNI GTAC 1 cut(s) 444
RseI CAYNNNNRTG 1 cut(s) 144
SatI GCNGC 3 cut(s) 46, 287, 373
Sau3AI GATC 1 cut(s) 403
Sau96I GGNCC 1 cut(s) 513
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 490
SinI GGWCC 1 cut(s) 513
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
SseBI AGGCCT 1 cut(s) 341
SsiI CCGC 1 cut(s) 373
SspMI CTAG 2 cut(s) 369, 468
StuI AGGCCT 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 2 cut(s) 6, 315
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 244, 533
TauI GCSGC 1 cut(s) 375
TscAI CASTG 3 cut(s) 19, 355, 495
TseFI GTSAC 2 cut(s) 14, 434
TseI GCWGC 2 cut(s) 45, 286
Tsp45I GTSAC 2 cut(s) 14, 434
TspDTI ATGAA 1 cut(s) 246
TspGWI ACGGA 1 cut(s) 109
TspRI CASTG 3 cut(s) 19, 355, 495
Tth111I GACNNNGTC 1 cut(s) 179
VneI GTGCAC 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 513
XspI CTAG 2 cut(s) 369, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.