Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010358

Physical Location & Seq

Genomic Coordinates Forward (+)

444291 .. 455693

Gene Structure 11403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG002900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2796 bp

ATGTCTCTGAACATGAAGACCCTACAGCAAGCCCTGGCCAAGGCCGGCGCGGTCATCGAGAAGACGGTACAGACGACGGTCCAGGAAGTCGCCGGGCCCAAGCCTCTTCAGGACTACGAGCTCTTCGACCAGATCGGCTCCGCCGGACCCGCCCTCGTCTGGAAACTCTACTCCGCCAAGGCCGCGCGCGGAGGCCAACATCAGTATCCCACTGTCTGCGTCTGGGTGCTGGATAAGAAGGCTCTCTCGGAGGCGCGTGTGCGGGCCGGGCTGTCCAAGGCGGCGGAGGATGCGTTTTTGGATATCATTAGGGCCGATGCGGCGAGGCTGGTGCGGCTGAGGCACCCCGGGGTGGTGCACGTGGTGCAGGCTTTGGATGAGAACAAGAATGCCATGGCGATGGTGACGGAGCCGTTGTTTGCGTCTGTGGCAAATGCAGTTGGGAATGTGGAGAATATGGTCAAGGTTCCGAAGGAGCTTAAAGGAATGGAAATGGGTTTGTTGGAAGTGAAGCATGGTTTGCTCCAGATAGCTGAGTCCTTGGACTTTCTCCATAACAATGCGCATCTTATTCATCGAGCTATATCACCCGAGAATGTGTTTATTACATCAAGTGGAGCTTGGAAGCTTGGTGGATTTGGTTTTGCAATCTCAACAGATCAGGCCTCAGGCAATATGAATGTTCCGGAATTTCATTATGCAGAGTATGATGTTGAGGACTCTGTACTTCCACTTCAGCCATCGCTGAATTACACTGCTCCTGAACTTGCTAGGAGTAAAGCATCTTCAGCGGGATGTTCTTCTGATATTTTCAGCTTTGGATGTCTTGCCTACCACTTGATTGCACGCAAACCTTTATTTGACTGCCACAATAATGTCAAGATGTACATGAATACCTTAAGTTATTTATCCAGTGAAGCCTTCTCCTCTATTCCTCCTGAGTTAGTTCCTGACTTGCAAAGGATGATCTCTACAAATGAGTCTTTCAGGCCATCAGCAATTGATTTTACAGGTTCTCCATTTTTCCGGGATGACACTAGGTTGCGTGCTCTTCGTTTTCTCGACCACATGCTCGAAAGGGATAACATGCAGAAATCTGAGTTCCTAAAAGCATTGTCTGATATGTGGAAAGATTTTGATGCTCGTGTATTGCGCTATAAGGTACTGCCTCCTCTTTGTGCAGAACTGAGGAATTTGGTAATGCAACCGATGATTCTGCCTATGGTTCTCATGATTGCTGAGTCTCAGGATAAAGATGATTTCGAGCTATCTACATTGCCAGCTCTTGTTCCTGTCCTGAGCACGGCTGTGGGTGACACATTGTTACTGCTTTTGAAGCATACAGATCTCATAATCAACAAGACTATTCCAGATCACTTGATATTACATGTCCTTCCCATGATTGTTCGAGCTTATGAAGAGAATGATGCCCGCATACAGGAGGAGGTTTTGAAAAGATCTGCTTCCCTTGCTAAGAAACTTGATCTTCAGCTAGTGAAACAAGCTATTTTGCCTCGTGTTCATGGCCTAGCTCTGAAAACAACTGTCGCTGCGGTGAGAGTCAATGCTTTGCTTTGTTTAGGAGAACTGATTCACACACTTGATAAGCGTGCTATTCTAGATATTTTGCAAACAATTCAGCGATGTACAGCGGTTGACCGCTCTGCTCCTACTCTTATGTGTACTCTTGGCGTGTCAAACTCGATCCTTAAGAAGCATGGGGTCGAGTTTGTTGCAGAGCATGTCCTCCCAATAATCATACCACTTCTTACTGCCCAGCAATTAAATGTTCAGCAGTTTGCCAAGTATATGCTTTTTGTCAAGGATATTCTGAGGAAGATAGAGGAAAAACGGGGGGTTACTGTGACGGATTCTGGAATCCCAGAGGTAAAGCCATCTTTATCTGCCAATGGGCTCCAGTCCCAAGTCCATTCCCAAGTCTCAAGTAACATAAGCGGAAATGTTTCGAGTGCTACAAATAGCCGTCCAGCGTGGGACGAAGAATGGGGTCCGATTAGAAAGCAGCCTTCCAATTCCCTCCAGAATTCTACAAATAGTGCTACCCCCAGTAATCCCCTAATGGGTAATGAACCAATTCAAGTAAGCTCCTCACAACCAAATTCATTCTTACAAACTGCAGTATCGAGTCAGCAAACTGCCGCATCATGCCCCCCGGTTGATATTGAGTGGCCTCCTCGGGCACCATCTGGTGTAATCCCTCAGTTTGATGATGCTGAGAAGAAATCAAATGCAGGAGTGTCACCCACTTCAAGTTTTGATGACATTGATCCTTTTGCCAACTGGCCCCCAAGGTCTAGTGGCTCAGTAGGTGGTTCTGGCCCTTCCAACAATGGGGCAATGGGATTTCCAACGAACAGATATGGTTCCAATTCACTCTCAAGTACATCAAATAGCATGAACTTGAACAGCAATAGCAATAACAGTTGGACCTTTGACACCCAGAGTTCTATTGAGCAAATAAGACTGAATCAAGGCAATGCAACTTCCAATACTGGTAGTCTGGGTAACTCAGGTTTCAGCTACCAGGATTCTCTTGGATATATGAAACAGAATCAGGCAATACCGGCTTCAAGTGCTTATACAAATAAAAACTCAGCTGATCTAGGATCAATATTTGCTTCTGCCAAGAATGACCAGACAGCACCTAGACTTGCTCCACCTCCTTCAACTACTGTGGGTCGAGGAAGAGGAAGAGGGAGGGGTGCTAGTTCAGTCTCTCGGTCCAGCCATGCCAAATCGTCAACTGAACAGCCTCCCCTTTTGGATCTACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002090 GO:0002092 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0006810 GO:0006897 GO:0006898 GO:0007034 GO:0007041 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008333 GO:0009893 GO:0009966 GO:0009968 GO:0009987 GO:0010604 GO:0010646 GO:0010648 GO:0016055 GO:0016192 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0030100 GO:0030111 GO:0030178 GO:0031323 GO:0031325 GO:0031623 GO:0032879 GO:0043112 GO:0043170 GO:0044237 GO:0044260 GO:0045807 GO:0046907 GO:0048259 GO:0048260 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060070 GO:0060255 GO:0060627 GO:0060828 GO:0065007 GO:0071704 GO:0090090 GO:0098657 GO:0198738 GO:1905114 GO:2000286 GO:2000369 GO:2000370

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Pkinase

Protein Analysis

931

Amino Acids

101.24

Weight (kDa)

6.87

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	101 - 332	1.1e-10	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	103 - 342	7.9e-21	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22870 AT1G22870 AT1G22870 AT1G22870
fragaria_vesca	FvH4_2g00710
malus_domestica	MD05G1002800.v1.1 MD10G1003500.v1.1
prunus_persica	Prupe.8G006100_v2.0.a1
pyrus_communis	pycom05g00260 pycom10g00300
rosa_chinensis	RchiOBHm_Chr6g0251091
rosa_laevigata	RLG00000015485
rosa_multiflora	Rmu_sc0002219.1_g000007 Rmu_sc0024842.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217050
rosa_rugosa	Rorug05G0500000
rosa_samantha	Rh6AG008200 Rh6BG002900 Rh6CG005700 Rh6DG005900
rosa_wichuraiana	Rw6G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	564
AccB1I	GGYRCC	2 cut(s)	342, 2200
AccBSI	CCGCTC	1 cut(s)	1662
AccII	CGCG	5 cut(s)	50, 185, 187, 189, 256
AccIII	TCCGGA	1 cut(s)	685
AclWI	GGATC	4 cut(s)	1699, 2282, 2635, 2793
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	4 cut(s)	689, 1192, 2044, 2119
AcuI	CTGAAG	4 cut(s)	92, 719, 771, 1472
AcvI	CACGTG	1 cut(s)	361
AdeI	CACNNNGTG	1 cut(s)	364
AfaI	GTAC	7 cut(s)	69, 726, 887, 1164, 1648, 1684, 2404
AfiI	CCNNNNNNNGG	7 cut(s)	40, 159, 352, 1303, 1438, 2081, 2352
AflII	CTTAAG	2 cut(s)	898, 1709
AflIII	ACRYGT	1 cut(s)	1387
AgsI	TTSAA	7 cut(s)	1336, 1453, 2099, 2271, 2425, 2592, 2688
AjnI	CCWGG	3 cut(s)	33, 81, 2544
AleI	CACNNNNGTG	1 cut(s)	1307
Alw21I	GWGCWC	4 cut(s)	123, 360, 1051, 1304
Alw26I	GTCTC	4 cut(s)	9, 1248, 1945, 2740
Alw44I	GTGCAC	1 cut(s)	356
AlwI	GGATC	4 cut(s)	1699, 2282, 2635, 2793
Ama87I	CYCGRG	3 cut(s)	347, 590, 2196
Aor13HI	TCCGGA	1 cut(s)	685
ApaI	GGGCCC	1 cut(s)	99
ApaLI	GTGCAC	1 cut(s)	356
ApeKI	GCWGC	2 cut(s)	1550, 2023
ApoI	RAATTY	4 cut(s)	689, 1192, 2044, 2119
Asp700I	GAANNNNTTC	3 cut(s)	1590, 1963, 2094
AspLEI	GCGC	6 cut(s)	50, 187, 189, 256, 565, 1155
AsuC2I	CCSGG	6 cut(s)	94, 268, 348, 349, 1028, 2174
AsuHPI	GGTGA	5 cut(s)	415, 579, 1325, 1567, 2253
AvaI	CYCGRG	3 cut(s)	347, 590, 2196
AvaII	GGWCC	5 cut(s)	79, 146, 2009, 2448, 2742
AxyI	CCTNAGG	1 cut(s)	667
BaeGI	GKGCMC	3 cut(s)	99, 360, 2203
BaeI	ACNNNNGTAYC	4 cut(s)	188, 221, 2124, 2157
BalI	TGGCCA	1 cut(s)	38
BanI	GGYRCC	2 cut(s)	342, 2200
BanII	GRGCYC	3 cut(s)	99, 123, 1917
BarI	GAAGNNNNNNTAC	4 cut(s)	717, 749, 769, 801
BauI	CACGAG	2 cut(s)	1143, 1515
BbrPI	CACGTG	1 cut(s)	361
BbsI	GAAGAC	2 cut(s)	23, 68
Bbv12I	GWGCWC	4 cut(s)	123, 360, 1051, 1304
BbvCI	CCTCAGC	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	1537, 2035
BccI	CCATC	5 cut(s)	394, 748, 1000, 1903, 2212
BceAI	ACGGC	3 cut(s)	397, 1320, 1968
BcgI	CGANNNNNNTGC	6 cut(s)	313, 347, 1198, 1232, 1715, 1749
BciT130I	CCWGG	3 cut(s)	35, 83, 2546
BciVI	GTATCC	1 cut(s)	216
BcnI	CCSGG	6 cut(s)	94, 268, 348, 349, 1028, 2174
BcoDI	GTCTC	4 cut(s)	9, 1248, 1945, 2740
BfaI	CTAG	9 cut(s)	771, 1038, 1493, 1529, 1619, 2316, 2624, 2667, 2727
BfmI	CTRYAG	2 cut(s)	23, 2136
BfrI	CTTAAG	2 cut(s)	898, 1709
BfuI	GTATCC	1 cut(s)	216
BglI	GCCNNNNNGGC	1 cut(s)	320
BglII	AGATCT	2 cut(s)	1345, 1457
BisI	GCNGC	7 cut(s)	183, 282, 321, 335, 1551, 2024, 2160
BlsI	GCNGC	7 cut(s)	184, 283, 322, 336, 1552, 2025, 2161
Bme1390I	CCNGG	9 cut(s)	35, 83, 94, 268, 348, 349, 1028, 2174, 2546
Bme18I	GGWCC	5 cut(s)	79, 146, 2009, 2448, 2742
BmeT110I	CYCGRG	3 cut(s)	347, 590, 2196
BmrFI	CCNGG	9 cut(s)	35, 83, 94, 268, 348, 349, 1028, 2174, 2546
BmrI	ACTGGG	1 cut(s)	2061
BmsI	GCATC	8 cut(s)	280, 307, 574, 791, 1129, 1417, 2171, 2221
BmuI	ACTGGG	1 cut(s)	2061
BoxI	GACNNNNGTC	1 cut(s)	77
BpiI	GAAGAC	2 cut(s)	23, 68
BpmI	CTGGAG	3 cut(s)	509, 1901, 2024
Bpu10I	CCTNAGC	2 cut(s)	338, 1298
BpuEI	CTTGAG	2 cut(s)	1927, 2383
BpuMI	CCSGG	6 cut(s)	94, 268, 348, 349, 1028, 2174
BsaAI	YACGTR	1 cut(s)	361
BsaWI	WCCGGW	1 cut(s)	685
BsaXI	ACNNNNNCTCC	6 cut(s)	278, 308, 401, 431, 1000, 1030
Bsc4I	CCNNNNNNNGG	7 cut(s)	40, 159, 352, 1303, 1438, 2081, 2352
Bse118I	RCCGGY	2 cut(s)	44, 2584
Bse1I	ACTGG	5 cut(s)	912, 1918, 2067, 2306, 2518
Bse21I	CCTNAGG	1 cut(s)	667
Bse3DI	GCAATG	3 cut(s)	1274, 2364, 2503
BseAI	TCCGGA	1 cut(s)	685
BseBI	CCWGG	3 cut(s)	35, 83, 2546
BseGI	GGATG	6 cut(s)	295, 382, 800, 827, 969, 1036
BseLI	CCNNNNNNNGG	7 cut(s)	40, 159, 352, 1303, 1438, 2081, 2352
BseMI	GCAATG	3 cut(s)	1274, 2364, 2503
BseNI	ACTGG	5 cut(s)	912, 1918, 2067, 2306, 2518
BsePI	GCGCGC	1 cut(s)	185
BseRI	GAGGAG	5 cut(s)	916, 1161, 1457, 2098, 2184
BseSI	GKGCMC	3 cut(s)	99, 360, 2203
BseXI	GCAGC	2 cut(s)	1537, 2035
BseYI	CCCAGC	1 cut(s)	1776
BsgI	GTGCAG	2 cut(s)	386, 1200
Bsh1236I	CGCG	5 cut(s)	50, 185, 187, 189, 256
BshNI	GGYRCC	2 cut(s)	342, 2200
BsiHKAI	GWGCWC	4 cut(s)	123, 360, 1051, 1304
BsiHKCI	CYCGRG	3 cut(s)	347, 590, 2196
BsiSI	CCGG	9 cut(s)	45, 93, 144, 267, 348, 686, 1027, 2174, 2585
BslFI	GGGAC	2 cut(s)	1906, 2009
BslI	CCNNNNNNNGG	7 cut(s)	40, 159, 352, 1303, 1438, 2081, 2352
BsmAI	GTCTC	4 cut(s)	9, 1248, 1945, 2740
BsmFI	GGGAC	2 cut(s)	1906, 2009
BsmI	GAATGC	1 cut(s)	394
BsoBI	CYCGRG	3 cut(s)	347, 590, 2196
Bsp120I	GGGCCC	1 cut(s)	95
Bsp1286I	GDGCHC	7 cut(s)	99, 123, 360, 1051, 1304, 1917, 2203
Bsp13I	TCCGGA	1 cut(s)	685
Bsp1407I	TGTACA	2 cut(s)	885, 1646
Bsp19I	CCATGG	1 cut(s)	393
BspEI	TCCGGA	1 cut(s)	685
BspFNI	CGCG	5 cut(s)	50, 185, 187, 189, 256
BspHI	TCATGA	1 cut(s)	1230
BspMAI	CTGCAG	1 cut(s)	2140
BspPI	GGATC	4 cut(s)	1699, 2282, 2635, 2793
BspQI	GCTCTTC	2 cut(s)	128, 1056
BspT107I	GGYRCC	2 cut(s)	342, 2200
BspTI	CTTAAG	2 cut(s)	898, 1709
BsrBI	CCGCTC	1 cut(s)	1662
BsrDI	GCAATG	3 cut(s)	1274, 2364, 2503
BsrFI	RCCGGY	2 cut(s)	44, 2584
BsrGI	TGTACA	2 cut(s)	885, 1646
BsrI	ACTGG	5 cut(s)	912, 1918, 2067, 2306, 2518
BssAI	RCCGGY	2 cut(s)	44, 2584
BssHII	GCGCGC	1 cut(s)	185
BssSI	CACGAG	2 cut(s)	1143, 1515
BssT1I	CCWWGG	6 cut(s)	39, 177, 276, 393, 540, 2309
Bst2BI	CACGAG	2 cut(s)	1143, 1515
Bst2UI	CCWGG	3 cut(s)	35, 83, 2546
Bst4CI	ACNGT	7 cut(s)	67, 79, 214, 1546, 1864, 2444, 2695
Bst6I	CTCTTC	6 cut(s)	111, 128, 1056, 1413, 2701, 2707
BstAFI	CTTAAG	2 cut(s)	898, 1709
BstAPI	GCANNNNNTGC	2 cut(s)	364, 520
BstAUI	TGTACA	2 cut(s)	885, 1646
BstBAI	YACGTR	1 cut(s)	361
BstDSI	CCRYGG	1 cut(s)	393
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	6 cut(s)	295, 382, 800, 827, 969, 1036
BstFNI	CGCG	5 cut(s)	50, 185, 187, 189, 256
BstHHI	GCGC	6 cut(s)	50, 187, 189, 256, 565, 1155
BstMAI	GTCTC	4 cut(s)	9, 1248, 1945, 2740
BstNI	CCWGG	3 cut(s)	35, 83, 2546
BstNSI	RCATGY	4 cut(s)	1072, 1090, 1391, 1745
BstPAI	GACNNNNGTC	1 cut(s)	77
BstSCI	CCNGG	9 cut(s)	33, 81, 92, 266, 346, 347, 1026, 2172, 2544
BstSFI	CTRYAG	2 cut(s)	23, 2136
BstSLI	GKGCMC	3 cut(s)	99, 360, 2203
BstUI	CGCG	5 cut(s)	50, 185, 187, 189, 256
BstV1I	GCAGC	2 cut(s)	1537, 2035
BstV2I	GAAGAC	2 cut(s)	23, 68
BstX2I	RGATCY	3 cut(s)	1345, 1457, 2785
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	3 cut(s)	1345, 1457, 2785
Bsu36I	CCTNAGG	1 cut(s)	667
BsuI	GTATCC	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	393
BtgZI	GCGATG	3 cut(s)	413, 726, 1657
BtsCI	GGATG	6 cut(s)	295, 382, 800, 827, 969, 1036
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	3 cut(s)	210, 753, 919
CciI	TCATGA	1 cut(s)	1230
CfoI	GCGC	6 cut(s)	50, 187, 189, 256, 565, 1155
Cfr10I	RCCGGY	2 cut(s)	44, 2584
Cfr9I	CCCGGG	1 cut(s)	347
CseI	GACGC	2 cut(s)	208, 411
Csp6I	GTAC	7 cut(s)	68, 725, 886, 1163, 1647, 1683, 2403
CspCI	CAANNNNNGTGG	2 cut(s)	2676, 2711
CviQI	GTAC	7 cut(s)	68, 725, 886, 1163, 1647, 1683, 2403
DraIII	CACNNNGTG	1 cut(s)	364
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	6 cut(s)	111, 128, 1056, 1413, 2701, 2707
EarI	CTCTTC	6 cut(s)	111, 128, 1056, 1413, 2701, 2707
EciI	GGCGGA	3 cut(s)	130, 163, 299
Ecl136II	GAGCTC	1 cut(s)	121
Eco130I	CCWWGG	6 cut(s)	39, 177, 276, 393, 540, 2309
Eco147I	AGGCCT	1 cut(s)	665
Eco24I	GRGCYC	3 cut(s)	99, 123, 1917
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	5 cut(s)	79, 146, 2009, 2448, 2742
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	4 cut(s)	92, 719, 771, 1472
Eco72I	CACGTG	1 cut(s)	361
Eco81I	CCTNAGG	1 cut(s)	667
Eco88I	CYCGRG	3 cut(s)	347, 590, 2196
EcoICRI	GAGCTC	1 cut(s)	121
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	2044
EcoRII	CCWGG	3 cut(s)	33, 81, 2544
EcoRV	GATATC	1 cut(s)	304
EcoT14I	CCWWGG	6 cut(s)	39, 177, 276, 393, 540, 2309
EcoT38I	GRGCYC	3 cut(s)	99, 123, 1917
ErhI	CCWWGG	6 cut(s)	39, 177, 276, 393, 540, 2309
FalI	AAGNNNNNCTT	4 cut(s)	604, 636, 1447, 1479
FaqI	GGGAC	2 cut(s)	1906, 2009
FauI	CCCGC	4 cut(s)	157, 255, 784, 1439
Fnu4HI	GCNGC	7 cut(s)	183, 282, 321, 335, 1551, 2024, 2160
FokI	GGATG	6 cut(s)	302, 389, 807, 834, 976, 1043
FriOI	GRGCYC	3 cut(s)	99, 123, 1917
Fsp4HI	GCNGC	7 cut(s)	183, 282, 321, 335, 1551, 2024, 2160
FspAI	RTGCGCAY	1 cut(s)	564
FspBI	CTAG	9 cut(s)	771, 1038, 1493, 1529, 1619, 2316, 2624, 2667, 2727
FspI	TGCGCA	1 cut(s)	564
GlaI	GCGC	6 cut(s)	49, 186, 188, 255, 564, 1154
GluI	GCNGC	7 cut(s)	183, 282, 321, 335, 1551, 2024, 2160
GsaI	CCCAGC	1 cut(s)	1780
GsuI	CTGGAG	3 cut(s)	509, 1901, 2024
HapII	CCGG	9 cut(s)	45, 93, 144, 267, 348, 686, 1027, 2174, 2585
HgaI	GACGC	2 cut(s)	208, 411
HhaI	GCGC	6 cut(s)	50, 187, 189, 256, 565, 1155
Hin6I	GCGC	6 cut(s)	48, 185, 187, 254, 563, 1153
HinP1I	GCGC	6 cut(s)	48, 185, 187, 254, 563, 1153
HincII	GTYRAC	2 cut(s)	1657, 2763
HindII	GTYRAC	2 cut(s)	1657, 2763
HindIII	AAGCTT	1 cut(s)	626
HpaII	CCGG	9 cut(s)	45, 93, 144, 267, 348, 686, 1027, 2174, 2585
HphI	GGTGA	5 cut(s)	415, 579, 1325, 1567, 2253
Hpy166II	GTNNAC	4 cut(s)	358, 1657, 1683, 2763
Hpy188I	TCNGA	9 cut(s)	9, 250, 471, 805, 1099, 1120, 1536, 1833, 2013
Hpy8I	GTNNAC	4 cut(s)	358, 1657, 1683, 2763
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	7 cut(s)	232, 466, 931, 1403, 2037, 2352, 2694
HpyCH4III	ACNGT	7 cut(s)	67, 79, 214, 1546, 1864, 2444, 2695
HpyCH4IV	ACGT	1 cut(s)	360
HpySE526I	ACGT	1 cut(s)	360
HspAI	GCGC	6 cut(s)	48, 185, 187, 254, 563, 1153
Kpn2I	TCCGGA	1 cut(s)	685
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
LguI	GCTCTTC	2 cut(s)	128, 1056
Lsp1109I	GCAGC	2 cut(s)	1537, 2035
LweI	GCATC	8 cut(s)	280, 307, 574, 791, 1129, 1417, 2171, 2221
MaeI	CTAG	9 cut(s)	771, 1038, 1493, 1529, 1619, 2316, 2624, 2667, 2727
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	8 cut(s)	403, 1313, 1323, 1858, 1864, 1946, 2259, 2525
MauBI	CGCGCGCG	1 cut(s)	185
MbiI	CCGCTC	1 cut(s)	1662
MfeI	CAATTG	1 cut(s)	999
MflI	RGATCY	3 cut(s)	1345, 1457, 2785
MhlI	GDGCHC	7 cut(s)	99, 123, 360, 1051, 1304, 1917, 2203
MlsI	TGGCCA	1 cut(s)	38
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	6 cut(s)	545, 713, 989, 1250, 1569, 2155
MmeI	TCCRAC	4 cut(s)	483, 2370, 2393, 2426
Mox20I	TGGCCA	1 cut(s)	38
MroI	TCCGGA	1 cut(s)	685
MroNI	GCCGGC	1 cut(s)	44
MroXI	GAANNNNTTC	3 cut(s)	1590, 1963, 2094
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	4 cut(s)	480, 899, 1710, 1784
MslI	CAYNNNNRTG	4 cut(s)	398, 558, 873, 1307
Msp20I	TGGCCA	1 cut(s)	38
MspA1I	CMGCKG	3 cut(s)	791, 1652, 2618
MspCI	CTTAAG	2 cut(s)	898, 1709
MspI	CCGG	9 cut(s)	45, 93, 144, 267, 348, 686, 1027, 2174, 2585
MspR9I	CCNGG	9 cut(s)	35, 83, 94, 268, 348, 349, 1028, 2174, 2546
MunI	CAATTG	1 cut(s)	999
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	3 cut(s)	35, 83, 2546
MvnI	CGCG	5 cut(s)	50, 185, 187, 189, 256
NaeI	GCCGGC	1 cut(s)	46
NciI	CCSGG	6 cut(s)	94, 268, 348, 349, 1028, 2174
NcoI	CCATGG	1 cut(s)	393
NgoMIV	GCCGGC	1 cut(s)	44
NmuCI	GTSAC	4 cut(s)	403, 1313, 1864, 2259
NsbI	TGCGCA	1 cut(s)	564
NspI	RCATGY	4 cut(s)	1072, 1090, 1391, 1745
OliI	CACNNNNGTG	1 cut(s)	1307
PagI	TCATGA	1 cut(s)	1230
PauI	GCGCGC	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	665
PciI	ACATGT	1 cut(s)	1387
PciSI	GCTCTTC	2 cut(s)	128, 1056
PcsI	WCGNNNNNNNCGW	2 cut(s)	71, 123
PctI	GAATGC	1 cut(s)	394
PdiI	GCCGGC	1 cut(s)	46
PdmI	GAANNNNTTC	3 cut(s)	1590, 1963, 2094
PfeI	GAWTC	7 cut(s)	1213, 1591, 1871, 1878, 2488, 2549, 2572
PfoI	TCCNGGA	2 cut(s)	81, 1026
PkrI	GCNGC	7 cut(s)	184, 283, 322, 336, 1552, 2025, 2161
PleI	GAGTC	6 cut(s)	544, 713, 988, 1249, 1568, 2154
PmaCI	CACGTG	1 cut(s)	361
PmlI	CACGTG	1 cut(s)	361
PpsI	GAGTC	6 cut(s)	544, 713, 988, 1249, 1568, 2154
Ppu21I	YACGTR	1 cut(s)	361
PscI	ACATGT	1 cut(s)	1387
PshAI	GACNNNNGTC	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	123
Psp6I	CCWGG	3 cut(s)	33, 81, 2544
PspCI	CACGTG	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	1776
PspGI	CCWGG	3 cut(s)	33, 81, 2544
PspOMI	GGGCCC	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	2140
PsuI	RGATCY	3 cut(s)	1345, 1457, 2785
PteI	GCGCGC	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	2618
RsaI	GTAC	7 cut(s)	69, 726, 887, 1164, 1648, 1684, 2404
RsaNI	GTAC	7 cut(s)	68, 725, 886, 1163, 1647, 1683, 2403
RseI	CAYNNNNRTG	4 cut(s)	398, 558, 873, 1307
SacI	GAGCTC	1 cut(s)	123
SapI	GCTCTTC	2 cut(s)	128, 1056
SaqAI	TTAA	4 cut(s)	480, 899, 1710, 1784
SatI	GCNGC	7 cut(s)	183, 282, 321, 335, 1551, 2024, 2160
SchI	GAGTC	6 cut(s)	545, 713, 989, 1250, 1569, 2155
ScrFI	CCNGG	9 cut(s)	35, 83, 94, 268, 348, 349, 1028, 2174, 2546
SduI	GDGCHC	7 cut(s)	99, 123, 360, 1051, 1304, 1917, 2203
SfaNI	GCATC	8 cut(s)	280, 307, 574, 791, 1129, 1417, 2171, 2221
SfcI	CTRYAG	2 cut(s)	23, 2136
SinI	GGWCC	5 cut(s)	79, 146, 2009, 2448, 2742
SmaI	CCCGGG	1 cut(s)	349
SmiMI	CAYNNNNRTG	4 cut(s)	398, 558, 873, 1307
SmlI	CTYRAG	4 cut(s)	898, 1709, 1942, 2398
SmoI	CTYRAG	4 cut(s)	898, 1709, 1942, 2398
SseBI	AGGCCT	1 cut(s)	665
SspI	AATATT	1 cut(s)	2634
SspMI	CTAG	9 cut(s)	771, 1038, 1493, 1529, 1619, 2316, 2624, 2667, 2727
SstI	GAGCTC	1 cut(s)	123
StuI	AGGCCT	1 cut(s)	665
StyD4I	CCNGG	9 cut(s)	33, 81, 92, 266, 346, 347, 1026, 2172, 2544
StyI	CCWWGG	6 cut(s)	39, 177, 276, 393, 540, 2309
TaaI	ACNGT	7 cut(s)	67, 79, 214, 1546, 1864, 2444, 2695
TaiI	ACGT	1 cut(s)	363
TaqII	GACCGA	1 cut(s)	2730
TatI	WGTACW	5 cut(s)	724, 885, 1646, 1682, 2402
TauI	GCSGC	5 cut(s)	185, 284, 323, 337, 2162
TfiI	GAWTC	7 cut(s)	1213, 1591, 1871, 1878, 2488, 2549, 2572
Tru1I	TTAA	4 cut(s)	480, 899, 1710, 1784
Tru9I	TTAA	4 cut(s)	480, 899, 1710, 1784
TscAI	CASTG	3 cut(s)	217, 760, 919
TseFI	GTSAC	4 cut(s)	403, 1313, 1864, 2259
TseI	GCWGC	2 cut(s)	1550, 2023
Tsp45I	GTSAC	4 cut(s)	403, 1313, 1864, 2259
TspGWI	ACGGA	2 cut(s)	422, 1883
TspMI	CCCGGG	1 cut(s)	347
TspRI	CASTG	3 cut(s)	217, 760, 919
Vha464I	CTTAAG	2 cut(s)	898, 1709
VneI	GTGCAC	1 cut(s)	356
VpaK11BI	GGWCC	5 cut(s)	79, 146, 2009, 2448, 2742
XagI	CCTNNNNNAGG	1 cut(s)	38
XapI	RAATTY	4 cut(s)	689, 1192, 2044, 2119
XbaI	TCTAGA	1 cut(s)	1618
XceI	RCATGY	4 cut(s)	1072, 1090, 1391, 1745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2552
XmaI	CCCGGG	1 cut(s)	347
XmnI	GAANNNNTTC	3 cut(s)	1590, 1963, 2094
XspI	CTAG	9 cut(s)	771, 1038, 1493, 1529, 1619, 2316, 2624, 2667, 2727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.