Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0012001

Physical Location & Seq

Genomic Coordinates Reverse (-)

26606190 .. 26608361

Gene Structure 2172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG163700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2172 bp

ATGCCGGCCCTGGCTTGTTGCGTGGACGCTGCAGTGGCTCCTCCCGGCTACGCCTTTGCCGGGGATAGCTCTCTTCCTGCGCCGGTCCCATTTTCCGGCGTATTTCCGACCACCGCCAACACCACCGCCTCCGCAGCCGCCGCTGCTTGGTCTCCCTCTCTATCCAACGAGCTCTACCGAATCGATGCCTGGGGAGGGCCGTACTTCACGGTCAATTCCTCCGGCAACGTCTCCGTCCGGCCTTACGGCTCCGGGACCATGCCCCACCAGGAGATAGATTTGCTGAAAATAGTAAAGAAGGTTTCGGATCCGAAATCCGAATCCGGGCTCGGGTTGCAGCTCCCTCTCATTGTTCGCTTTCCCGACGTCCTTAAGAACCGGCTGGAATCTCTCCAGGGAGCCTTCGATTTCGCGATCCAGTCCCAGGACTACGGGTCCCACTACCAGGGCGTGTACCCGGTGAAATGCAACCAGGACCGGTTCGTCGTGGAGGACATTGTCCGGTTCGGGAAGCCGTTCCGGTTCGGACTCGAAGCCGGGTCGAAGCCCGAGCTCCTCATGGCCATGAGCTGCCTGTGCAAAGGTAACCCAGAATCCCTCCTGGTCTGCAATGGATTCAAGGACTTTGAGTACATCTCGCTGGCTCTGATGGCGAGGAAGCTGGATTTGAACACCGTGATTGTTCTCGAGCAAGAGGAAGAGCTGGATTTGGTGATTCAATTGAGCAAGAAACTCGGCGTCCGTCCCGTGATTGGCGCGCGTGCGAAGCTCAGAACCAAGCATTCCGGCCATTTCGGGTCGACTTCCGGCGAGAAAGGGAAGTTCGGGTTAACCACCACTCAGATTTTGCGGGTGGTGAAGAAGCTTGAGCAAGTAGGTATGCTTGATTGCTTTCAGTTGCTGCATTTTCATATTGGGTCTCAGATCCCTACGACTGCTCTGCTCGCTGATGGTGTATCCGAGGCGGCGCAGATCTATTGCGAATTGGTCCGCCTCGGTGCCCATATGAAGGTCATAGACATTGGAGGTGGTTTGGGGATAGACTATGATGGATCCAAATCCAACGACTCTGAGATTTCTGTTGGCTATGGGATTGAGGAGTATGCAATGGCTGTTGTTCGAGCAGTCCGGTGTGTTTGTGACCGGAGGTCGGTGAAGCACCCTGTGATTTGCAGCGAGAGCGGCAGAGCCATTGTGTCTCATCACTCGGTTCTGATTTTTGAGGCTGTTTCTGCTAGTGCTTGTGATGTTGCTCCTTCCATGTCTGCCTATGCGCTTCAGTATTTCATTGAGGGACTTACAGAAGAAGCTCGTGCTGATTACCGGAACCTTTCGGCTGCGGCAATCAGGGGCGAGTATGAAGCTTGTTTGACATATGCTGATCTGCTGAAGCAGCGCTGTGTTGATCAATTCAAAGAAGGGTCTCTGGGTATTGAACAATTAGCCACTGTGGATGGGCTTTGTGATTTGGTCTCGAAAGCAATTGGAGCGTCCGATCCAGTTCGTACATACAATGTCAACCTCTCGGTTTTCACTTCGATTCCCGACTTCTGGGGCATTGGGCAGCTTTTCCCTATTGTCCCAATTCACCGGCTCGATCAACGGCCGGCGGTGAGAGGTGTGTTATCGGACTTGACCTGTGATAGTGATGGGAAGATCAATAAGTTCATTGGCGGCGAGTCCAGCCTGCCGCTTCATGAAATGGAAGGCAATGGCTCTGGTGGGCGGTACTATTTGGGAATGTTCTTGGGTGGGGCCTATGAGGAGGCACTCGGAGGAGTGCACAACCTGTTTGGAGGCCCGAGCGTTGTTCGGGTCTCCCAGAGCGACGGTCCATACAGCTTTGCGGTTACGCGGGCTGTGCCTGGGCCTTCTTGCGCAGACGTCCTCCGTTTGATGCAGCACGAGCCCGAGCTCATGTTCGAGACTCTCAAACACCGTGCAGAGGAGTGTGGTGAGGTCGACAAAGATGGAATGGCGAATTCGGCTTTGGCCACCAGCCTAGCACGCTCCTTCCACAACATGCCGTATCTGTCTGTAGCTTCGTCTTGTTGCCTGACTGCAATGAACAACCATGGTTTGTACTATTGCAGTGAGGATGATTATGACATTGTTGCTGATTCTGGTGCTCCTAATGCTGGTGAGGAGGACTGGTCATATTGCTGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008792 GO:0009058 GO:0009266 GO:0009308 GO:0009309 GO:0009409 GO:0009445 GO:0009446 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0016829 GO:0016830 GO:0016831 GO:0033993 GO:0034641 GO:0042221 GO:0042401 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0050896 GO:0071704 GO:0080167 GO:0097164 GO:0097305 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

Orn_Arg_deC_N

Protein Analysis

723

Amino Acids

77.96

Weight (kDa)

5.23

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Orn_Arg_deC_N	PF02784	147 - 400	4.8e-35	Pyridoxal-dependent decarboxylase, pyridoxal binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16500 AT4G34710 AT4G34710
fragaria_vesca	FvH4_2g10570
malus_domestica	MD05G1055300.v1.1 MD10G1062500.v1.1
prunus_persica	Prupe.8G083100_v2.0.a1
pyrus_communis	pycom05g04560 pycom10g04830
rosa_chinensis	RchiOBHm_Chr6g0268211
rosa_laevigata	RLG00000013925
rosa_multiflora	Rmu_sc0009095.1_g000007
rosa_roxburghii	Rroxscaffold_7G00199960
rosa_rugosa	Rorug06G0039700.1
rosa_samantha	Rh6AG159800 Rh6BG163700 Rh6CG154300 Rh6DG149600
rosa_wichuraiana	Rw6G013820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	482
AatII	GACGTC	2 cut(s)	369, 1887
Acc16I	TGCGCA	1 cut(s)	1879
AccB1I	GGYRCC	1 cut(s)	998
AccBSI	CCGCTC	1 cut(s)	1182
AccI	GTMKAC	2 cut(s)	800, 1962
AccII	CGCG	4 cut(s)	413, 758, 760, 1855
AclWI	GGATC	7 cut(s)	302, 315, 409, 919, 1047, 1060, 1490
AcoI	YGGCCR	4 cut(s)	561, 787, 1604, 1992
AcsI	RAATTY	1 cut(s)	1981
AcuI	CTGAAG	2 cut(s)	1262, 1409
AcyI	GRCGYC	3 cut(s)	366, 738, 1884
AdeI	CACNNNGTG	1 cut(s)	1165
AfaI	GTAC	6 cut(s)	203, 455, 632, 1507, 1730, 2084
AfeI	AGCGCT	1 cut(s)	1397
AflII	CTTAAG	1 cut(s)	371
AgeI	ACCGGT	1 cut(s)	477
AgsI	TTSAA	5 cut(s)	619, 670, 719, 1414, 1436
AhdI	GACNNNNNGTC	2 cut(s)	433, 1147
AjnI	CCWGG	9 cut(s)	9, 188, 267, 393, 423, 444, 471, 600, 1864
AjuI	GAANNNNNNNTTGG	2 cut(s)	1973, 2005
Alw21I	GWGCWC	5 cut(s)	174, 555, 1785, 1917, 2131
Alw26I	GTCTC	8 cut(s)	156, 235, 924, 1203, 1428, 1477, 1822, 1919
Alw44I	GTGCAC	1 cut(s)	1781
AlwI	GGATC	7 cut(s)	302, 315, 409, 919, 1047, 1060, 1490
AlwNI	CAGNNNCTG	1 cut(s)	901
Ama87I	CYCGRG	5 cut(s)	329, 548, 686, 1801, 1910
Aor51HI	AGCGCT	1 cut(s)	1397
ApaLI	GTGCAC	1 cut(s)	1781
ApoI	RAATTY	1 cut(s)	1981
AsiGI	ACCGGT	1 cut(s)	477
Asp700I	GAANNNNTTC	1 cut(s)	515
AspLEI	GCGC	7 cut(s)	82, 758, 760, 970, 1276, 1398, 1880
AsuC2I	CCSGG	6 cut(s)	45, 61, 253, 325, 458, 538
AsuHPI	GGTGA	8 cut(s)	472, 724, 868, 1165, 1580, 1624, 1967, 2153
AvaI	CYCGRG	5 cut(s)	329, 548, 686, 1801, 1910
AvaII	GGWCC	6 cut(s)	85, 255, 435, 475, 988, 1832
BaeGI	GKGCMC	2 cut(s)	1003, 1785
BalI	TGGCCA	2 cut(s)	563, 1994
BamHI	GGATCC	2 cut(s)	307, 1052
BanI	GGYRCC	1 cut(s)	998
BanII	GRGCYC	5 cut(s)	174, 330, 555, 1911, 1917
BauI	CACGAG	2 cut(s)	1311, 1904
Bbv12I	GWGCWC	5 cut(s)	174, 555, 1785, 1917, 2131
BccI	CCATC	6 cut(s)	643, 944, 1043, 1448, 1643, 1964
BceAI	ACGGC	5 cut(s)	184, 262, 499, 1619, 2011
BcgI	CGANNNNNNTGC	4 cut(s)	715, 749, 922, 956
BciT130I	CCWGG	9 cut(s)	11, 190, 269, 395, 425, 446, 473, 602, 1866
BciVI	GTATCC	1 cut(s)	967
BclI	TGATCA	1 cut(s)	1405
BcnI	CCSGG	6 cut(s)	45, 61, 253, 325, 458, 538
BcoDI	GTCTC	8 cut(s)	156, 235, 924, 1203, 1428, 1477, 1822, 1919
BfaI	CTAG	2 cut(s)	1236, 2003
BfmI	CTRYAG	2 cut(s)	30, 2037
BfoI	RGCGCY	1 cut(s)	1399
BfrI	CTTAAG	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	967
BglII	AGATCT	1 cut(s)	972
Bme18I	GGWCC	6 cut(s)	85, 255, 435, 475, 988, 1832
BmeRI	GACNNNNNGTC	2 cut(s)	433, 1147
BmeT110I	CYCGRG	5 cut(s)	329, 548, 686, 1801, 1910
BmsI	GCATC	2 cut(s)	175, 1887
BplI	GAGNNNNNCTC	2 cut(s)	620, 652
BpmI	CTGGAG	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	887
BpuMI	CCSGG	6 cut(s)	45, 61, 253, 325, 458, 538
Bsa29I	ATCGAT	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	1057
BsaHI	GRCGYC	3 cut(s)	366, 738, 1884
BsaI	GGTCTC	5 cut(s)	156, 924, 1428, 1477, 1822
BsaWI	WCCGGW	6 cut(s)	477, 501, 519, 1128, 1143, 1323
BsaXI	ACNNNNNCTCC	2 cut(s)	2138, 2168
Bse118I	RCCGGY	6 cut(s)	4, 82, 378, 477, 1590, 1606
Bse1I	ACTGG	3 cut(s)	418, 1499, 2156
Bse3DI	GCAATG	4 cut(s)	616, 1113, 1717, 2070
Bse8I	GATNNNNATC	1 cut(s)	1057
BseBI	CCWGG	9 cut(s)	11, 190, 269, 395, 425, 446, 473, 602, 1866
BseCI	ATCGAT	1 cut(s)	183
BseGI	GGATG	2 cut(s)	1459, 2104
BseJI	GATNNNNATC	1 cut(s)	1057
BseMI	GCAATG	4 cut(s)	616, 1113, 1717, 2070
BseMII	CTCAG	4 cut(s)	784, 854, 935, 1062
BseNI	ACTGG	3 cut(s)	418, 1499, 2156
BsePI	GCGCGC	1 cut(s)	756
BseRI	GAGGAG	7 cut(s)	30, 545, 1112, 1778, 1791, 1961, 2159
BseSI	GKGCMC	2 cut(s)	1003, 1785
BseX3I	CGGCCG	1 cut(s)	1604
BsgI	GTGCAG	1 cut(s)	1962
Bsh1236I	CGCG	4 cut(s)	413, 758, 760, 1855
Bsh1285I	CGRYCG	1 cut(s)	1607
BshNI	GGYRCC	1 cut(s)	998
BshTI	ACCGGT	1 cut(s)	477
BshVI	ATCGAT	1 cut(s)	183
BsiEI	CGRYCG	1 cut(s)	1607
BsiHKAI	GWGCWC	5 cut(s)	174, 555, 1785, 1917, 2131
BsiHKCI	CYCGRG	5 cut(s)	329, 548, 686, 1801, 1910
BslFI	GGGAC	7 cut(s)	71, 268, 406, 421, 729, 1308, 1565
BsmAI	GTCTC	8 cut(s)	156, 235, 924, 1203, 1428, 1477, 1822, 1919
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	7 cut(s)	71, 268, 406, 421, 729, 1308, 1565
BsmI	GAATGC	1 cut(s)	781
Bso31I	GGTCTC	5 cut(s)	156, 924, 1428, 1477, 1822
BsoBI	CYCGRG	5 cut(s)	329, 548, 686, 1801, 1910
Bsp1286I	GDGCHC	8 cut(s)	174, 330, 555, 1003, 1785, 1911, 1917, 2131
Bsp19I	CCATGG	1 cut(s)	2074
Bsp68I	TCGCGA	1 cut(s)	413
BspCNI	CTCAG	4 cut(s)	783, 853, 934, 1063
BspDI	ATCGAT	1 cut(s)	183
BspFNI	CGCG	4 cut(s)	413, 758, 760, 1855
BspHI	TCATGA	1 cut(s)	1696
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	7 cut(s)	302, 315, 409, 919, 1047, 1060, 1490
BspQI	GCTCTTC	1 cut(s)	693
BspT107I	GGYRCC	1 cut(s)	998
BspTI	CTTAAG	1 cut(s)	371
BspTNI	GGTCTC	5 cut(s)	156, 924, 1428, 1477, 1822
BsrBI	CCGCTC	1 cut(s)	1182
BsrDI	GCAATG	4 cut(s)	616, 1113, 1717, 2070
BsrFI	RCCGGY	6 cut(s)	4, 82, 378, 477, 1590, 1606
BsrI	ACTGG	3 cut(s)	418, 1499, 2156
BssAI	RCCGGY	6 cut(s)	4, 82, 378, 477, 1590, 1606
BssHII	GCGCGC	1 cut(s)	756
BssNI	GRCGYC	3 cut(s)	366, 738, 1884
BssSI	CACGAG	2 cut(s)	1311, 1904
BssT1I	CCWWGG	1 cut(s)	2074
Bst2BI	CACGAG	2 cut(s)	1311, 1904
Bst2UI	CCWGG	9 cut(s)	11, 190, 269, 395, 425, 446, 473, 602, 1866
Bst4CI	ACNGT	5 cut(s)	211, 676, 1450, 1832, 1940
Bst6I	CTCTTC	2 cut(s)	78, 693
BstACI	GRCGYC	3 cut(s)	366, 738, 1884
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	9 cut(s)	6, 642, 758, 762, 945, 1608, 1688, 1857, 2008
BstDEI	CTNAG	4 cut(s)	770, 840, 921, 1071
BstDSI	CCRYGG	1 cut(s)	2074
BstEII	GGTNACC	1 cut(s)	584
BstF5I	GGATG	2 cut(s)	1459, 2104
BstFNI	CGCG	4 cut(s)	413, 758, 760, 1855
BstH2I	RGCGCY	1 cut(s)	1399
BstHHI	GCGC	7 cut(s)	82, 758, 760, 970, 1276, 1398, 1880
BstMAI	GTCTC	8 cut(s)	156, 235, 924, 1203, 1428, 1477, 1822, 1919
BstMCI	CGRYCG	1 cut(s)	1607
BstNI	CCWGG	9 cut(s)	11, 190, 269, 395, 425, 446, 473, 602, 1866
BstNSI	RCATGY	1 cut(s)	2026
BstPI	GGTNACC	1 cut(s)	584
BstSFI	CTRYAG	2 cut(s)	30, 2037
BstSLI	GKGCMC	2 cut(s)	1003, 1785
BstUI	CGCG	4 cut(s)	413, 758, 760, 1855
BstX2I	RGATCY	4 cut(s)	307, 924, 972, 1052
BstYI	RGATCY	4 cut(s)	307, 924, 972, 1052
BstZI	CGGCCG	1 cut(s)	1604
Bsu15I	ATCGAT	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	967
BsuTUI	ATCGAT	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	2074
BtsCI	GGATG	2 cut(s)	1459, 2104
BtsI	GCAGTG	2 cut(s)	39, 2098
BtsIMutI	CAGTG	3 cut(s)	39, 1446, 2098
BtuMI	TCGCGA	1 cut(s)	413
Cac8I	GCNNGC	9 cut(s)	6, 642, 758, 762, 945, 1608, 1688, 1857, 2008
CaiI	CAGNNNCTG	1 cut(s)	901
CciI	TCATGA	1 cut(s)	1696
CfoI	GCGC	7 cut(s)	82, 758, 760, 970, 1276, 1398, 1880
Cfr10I	RCCGGY	6 cut(s)	4, 82, 378, 477, 1590, 1606
ClaI	ATCGAT	1 cut(s)	183
CseI	GACGC	3 cut(s)	35, 727, 1479
Csp6I	GTAC	6 cut(s)	202, 454, 631, 1506, 1729, 2083
CspAI	ACCGGT	1 cut(s)	477
CviAII	CATG	8 cut(s)	259, 559, 565, 1261, 1697, 1918, 2023, 2075
CviQI	GTAC	6 cut(s)	202, 454, 631, 1506, 1729, 2083
DdeI	CTNAG	4 cut(s)	770, 840, 921, 1071
DraIII	CACNNNGTG	1 cut(s)	1165
DrdI	GACNNNNNNGTC	1 cut(s)	482
DriI	GACNNNNNGTC	2 cut(s)	433, 1147
DseDI	GACNNNNNNGTC	1 cut(s)	482
EaeI	YGGCCR	4 cut(s)	561, 787, 1604, 1992
EagI	CGGCCG	1 cut(s)	1604
Eam1104I	CTCTTC	2 cut(s)	78, 693
Eam1105I	GACNNNNNGTC	2 cut(s)	433, 1147
EarI	CTCTTC	2 cut(s)	78, 693
EciI	GGCGGA	1 cut(s)	980
Ecl136II	GAGCTC	3 cut(s)	172, 553, 1915
EclXI	CGGCCG	1 cut(s)	1604
Eco130I	CCWWGG	1 cut(s)	2074
Eco24I	GRGCYC	5 cut(s)	174, 330, 555, 1911, 1917
Eco31I	GGTCTC	5 cut(s)	156, 924, 1428, 1477, 1822
Eco47I	GGWCC	6 cut(s)	85, 255, 435, 475, 988, 1832
Eco47III	AGCGCT	1 cut(s)	1397
Eco52I	CGGCCG	1 cut(s)	1604
Eco53kI	GAGCTC	3 cut(s)	172, 553, 1915
Eco57I	CTGAAG	2 cut(s)	1262, 1409
Eco88I	CYCGRG	5 cut(s)	329, 548, 686, 1801, 1910
Eco91I	GGTNACC	1 cut(s)	584
EcoICRI	GAGCTC	3 cut(s)	172, 553, 1915
EcoO109I	RGGNCCY	2 cut(s)	435, 1755
EcoO65I	GGTNACC	1 cut(s)	584
EcoRI	GAATTC	1 cut(s)	1981
EcoRII	CCWGG	9 cut(s)	9, 188, 267, 393, 423, 444, 471, 600, 1864
EcoT14I	CCWWGG	1 cut(s)	2074
EcoT38I	GRGCYC	5 cut(s)	174, 330, 555, 1911, 1917
ErhI	CCWWGG	1 cut(s)	2074
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	8 cut(s)	262, 562, 568, 1264, 1700, 1921, 2026, 2078
FaqI	GGGAC	7 cut(s)	71, 268, 406, 421, 729, 1308, 1565
FatI	CATG	8 cut(s)	258, 558, 564, 1260, 1696, 1917, 2022, 2074
FauI	CCCGC	2 cut(s)	843, 1848
FauNDI	CATATG	2 cut(s)	1005, 1375
FbaI	TGATCA	1 cut(s)	1405
FblI	GTMKAC	2 cut(s)	800, 1962
FokI	GGATG	2 cut(s)	1466, 2111
FriOI	GRGCYC	5 cut(s)	174, 330, 555, 1911, 1917
FspBI	CTAG	2 cut(s)	1236, 2003
FspI	TGCGCA	1 cut(s)	1879
GlaI	GCGC	7 cut(s)	81, 757, 759, 969, 1275, 1397, 1879
GsuI	CTGGAG	1 cut(s)	377
HaeII	RGCGCY	1 cut(s)	1399
HgaI	GACGC	3 cut(s)	35, 727, 1479
HhaI	GCGC	7 cut(s)	82, 758, 760, 970, 1276, 1398, 1880
Hin1I	GRCGYC	3 cut(s)	366, 738, 1884
Hin1II	CATG	8 cut(s)	262, 562, 568, 1264, 1700, 1921, 2026, 2078
Hin6I	GCGC	7 cut(s)	80, 756, 758, 968, 1274, 1396, 1878
HinP1I	GCGC	7 cut(s)	80, 756, 758, 968, 1274, 1396, 1878
HincII	GTYRAC	4 cut(s)	801, 831, 1519, 1963
HindII	GTYRAC	4 cut(s)	801, 831, 1519, 1963
HindIII	AAGCTT	2 cut(s)	863, 1362
HpaI	GTTAAC	1 cut(s)	831
HphI	GGTGA	8 cut(s)	472, 724, 868, 1165, 1580, 1624, 1967, 2153
Hpy166II	GTNNAC	7 cut(s)	25, 454, 801, 831, 1519, 1783, 1963
Hpy188III	TCNNGA	8 cut(s)	362, 412, 508, 686, 1474, 1544, 1697, 1924
Hpy8I	GTNNAC	7 cut(s)	25, 454, 801, 831, 1519, 1783, 1963
Hpy99I	CGWCG	3 cut(s)	368, 488, 1832
HpyAV	CCTTC	8 cut(s)	292, 412, 1003, 1266, 1412, 1700, 1881, 2023
HpyCH4III	ACNGT	5 cut(s)	211, 676, 1450, 1832, 1940
HpyCH4IV	ACGT	3 cut(s)	228, 366, 1884
HpyF3I	CTNAG	4 cut(s)	770, 840, 921, 1071
HpySE526I	ACGT	3 cut(s)	228, 366, 1884
Hsp92I	GRCGYC	3 cut(s)	366, 738, 1884
Hsp92II	CATG	8 cut(s)	262, 562, 568, 1264, 1700, 1921, 2026, 2078
HspAI	GCGC	7 cut(s)	80, 756, 758, 968, 1274, 1396, 1878
KflI	GGGWCCC	1 cut(s)	435
KroI	GCCGGC	2 cut(s)	4, 1606
KroNI	GCCGGC	2 cut(s)	6, 1608
Ksp22I	TGATCA	1 cut(s)	1405
KspAI	GTTAAC	1 cut(s)	831
LguI	GCTCTTC	1 cut(s)	693
LmnI	GCTCC	9 cut(s)	43, 254, 345, 398, 558, 1258, 1487, 2015, 2134
LweI	GCATC	2 cut(s)	175, 1887
MaeI	CTAG	2 cut(s)	1236, 2003
MaeII	ACGT	3 cut(s)	228, 366, 1884
MaeIII	GTNAC	3 cut(s)	584, 1139, 1849
MbiI	CCGCTC	1 cut(s)	1182
MboII	GAAGA	5 cut(s)	65, 710, 871, 1316, 1666
MfeI	CAATTG	2 cut(s)	719, 1482
MflI	RGATCY	4 cut(s)	307, 924, 972, 1052
MhlI	GDGCHC	8 cut(s)	174, 330, 555, 1003, 1785, 1911, 1917, 2131
MlsI	TGGCCA	2 cut(s)	563, 1994
MluCI	AATT	8 cut(s)	214, 719, 983, 1409, 1439, 1482, 1584, 1981
MluNI	TGGCCA	2 cut(s)	563, 1994
MlyI	GAGTC	4 cut(s)	522, 1061, 1688, 1921
MmeI	TCCRAC	3 cut(s)	131, 189, 1086
Mox20I	TGGCCA	2 cut(s)	563, 1994
MroNI	GCCGGC	2 cut(s)	4, 1606
MroXI	GAANNNNTTC	1 cut(s)	515
MscI	TGGCCA	2 cut(s)	563, 1994
MseI	TTAA	2 cut(s)	372, 830
MslI	CAYNNNNRTG	1 cut(s)	563
Msp20I	TGGCCA	2 cut(s)	563, 1994
MspA1I	CMGCKG	1 cut(s)	143
MspCI	CTTAAG	1 cut(s)	371
MunI	CAATTG	2 cut(s)	719, 1482
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	9 cut(s)	11, 190, 269, 395, 425, 446, 473, 602, 1866
MvnI	CGCG	4 cut(s)	413, 758, 760, 1855
NaeI	GCCGGC	2 cut(s)	6, 1608
NciI	CCSGG	6 cut(s)	45, 61, 253, 325, 458, 538
NcoI	CCATGG	1 cut(s)	2074
NdeI	CATATG	2 cut(s)	1005, 1375
NgoMIV	GCCGGC	2 cut(s)	4, 1606
NlaIII	CATG	8 cut(s)	262, 562, 568, 1264, 1700, 1921, 2026, 2078
NmeAIII	GCCGAG	1 cut(s)	714
NmuCI	GTSAC	1 cut(s)	1139
NruI	TCGCGA	1 cut(s)	413
NsbI	TGCGCA	1 cut(s)	1879
NspI	RCATGY	1 cut(s)	2026
PaeR7I	CTCGAG	1 cut(s)	686
PagI	TCATGA	1 cut(s)	1696
PauI	GCGCGC	1 cut(s)	756
PciSI	GCTCTTC	1 cut(s)	693
PctI	GAATGC	1 cut(s)	781
PdiI	GCCGGC	2 cut(s)	6, 1608
PdmI	GAANNNNTTC	1 cut(s)	515
PfeI	GAWTC	8 cut(s)	180, 320, 386, 593, 615, 715, 1540, 2120
PflFI	GACNNNGTC	1 cut(s)	497
PfoI	TCCNGGA	1 cut(s)	251
PinAI	ACCGGT	1 cut(s)	477
PleI	GAGTC	4 cut(s)	522, 1061, 1687, 1921
PpsI	GAGTC	4 cut(s)	522, 1061, 1687, 1921
PpuMI	RGGWCCY	1 cut(s)	435
Psp124BI	GAGCTC	3 cut(s)	174, 555, 1917
Psp5II	RGGWCCY	1 cut(s)	435
Psp6I	CCWGG	9 cut(s)	9, 188, 267, 393, 423, 444, 471, 600, 1864
PspEI	GGTNACC	1 cut(s)	584
PspGI	CCWGG	9 cut(s)	9, 188, 267, 393, 423, 444, 471, 600, 1864
PspPPI	RGGWCCY	1 cut(s)	435
PstI	CTGCAG	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	901
PsuI	RGATCY	4 cut(s)	307, 924, 972, 1052
PsyI	GACNNNGTC	1 cut(s)	497
PteI	GCGCGC	1 cut(s)	756
RruI	TCGCGA	1 cut(s)	413
RsaI	GTAC	6 cut(s)	203, 455, 632, 1507, 1730, 2084
RsaNI	GTAC	6 cut(s)	202, 454, 631, 1506, 1729, 2083
RseI	CAYNNNNRTG	1 cut(s)	563
SacI	GAGCTC	3 cut(s)	174, 555, 1917
SalI	GTCGAC	2 cut(s)	799, 1961
SapI	GCTCTTC	1 cut(s)	693
SaqAI	TTAA	2 cut(s)	372, 830
SchI	GAGTC	4 cut(s)	522, 1061, 1688, 1921
SduI	GDGCHC	8 cut(s)	174, 330, 555, 1003, 1785, 1911, 1917, 2131
SfaNI	GCATC	2 cut(s)	175, 1887
SfcI	CTRYAG	2 cut(s)	30, 2037
Sfr274I	CTCGAG	1 cut(s)	686
SinI	GGWCC	6 cut(s)	85, 255, 435, 475, 988, 1832
SlaI	CTCGAG	1 cut(s)	686
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	3 cut(s)	371, 686, 866
SmoI	CTYRAG	3 cut(s)	371, 686, 866
Sse9I	AATT	8 cut(s)	214, 719, 983, 1409, 1439, 1482, 1584, 1981
SspMI	CTAG	2 cut(s)	1236, 2003
SstI	GAGCTC	3 cut(s)	174, 555, 1917
StyI	CCWWGG	1 cut(s)	2074
TaaI	ACNGT	5 cut(s)	211, 676, 1450, 1832, 1940
TaiI	ACGT	3 cut(s)	231, 369, 1887
TasI	AATT	8 cut(s)	214, 719, 983, 1409, 1439, 1482, 1584, 1981
TatI	WGTACW	2 cut(s)	630, 2082
TauI	GCSGC	7 cut(s)	140, 143, 968, 1185, 1343, 1677, 1693
TfiI	GAWTC	8 cut(s)	180, 320, 386, 593, 615, 715, 1540, 2120
Tru1I	TTAA	2 cut(s)	372, 830
Tru9I	TTAA	2 cut(s)	372, 830
TscAI	CASTG	3 cut(s)	39, 1453, 2098
TseFI	GTSAC	1 cut(s)	1139
Tsp45I	GTSAC	1 cut(s)	1139
TspDTI	ATGAA	8 cut(s)	899, 1022, 1276, 1374, 1657, 1685, 1713, 2081
TspGWI	ACGGA	3 cut(s)	223, 731, 1880
TspRI	CASTG	3 cut(s)	39, 1453, 2098
Tth111I	GACNNNGTC	1 cut(s)	497
Vha464I	CTTAAG	1 cut(s)	371
VneI	GTGCAC	1 cut(s)	1781
VpaK11BI	GGWCC	6 cut(s)	85, 255, 435, 475, 988, 1832
XapI	RAATTY	1 cut(s)	1981
XceI	RCATGY	1 cut(s)	2026
XhoI	CTCGAG	1 cut(s)	686
XmiI	GTMKAC	2 cut(s)	800, 1962
XmnI	GAANNNNTTC	1 cut(s)	515
XspI	CTAG	2 cut(s)	1236, 2003
ZraI	GACGTC	2 cut(s)	367, 1885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.