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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom12g06750 |
| rosa_laevigata | RLG00000014837 |
| rosa_roxburghii | Rroxscaffold_2G00117710 |
| rosa_samantha | Rh3DG349100 Rh5AG331100 Rh5BG273900 Rh5DG281800 Rh6CG333500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1262 |
| AclWI | GGATC | 2 cut(s) | 487, 517 |
| AcsI | RAATTY | 1 cut(s) | 341 |
| AfaI | GTAC | 2 cut(s) | 674, 1243 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1262 |
| AgsI | TTSAA | 9 cut(s) | 14, 277, 296, 398, 428, 586, 707, 1049, 1129 |
| AjnI | CCWGG | 1 cut(s) | 729 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 17, 49 |
| AleI | CACNNNNGTG | 1 cut(s) | 945 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 739, 771 |
| AluBI | AGCT | 5 cut(s) | 197, 230, 874, 978, 1310 |
| AluI | AGCT | 5 cut(s) | 197, 230, 874, 978, 1310 |
| Alw21I | GWGCWC | 3 cut(s) | 980, 1210, 1387 |
| Alw26I | GTCTC | 1 cut(s) | 207 |
| AlwI | GGATC | 2 cut(s) | 487, 517 |
| AoxI | GGCC | 1 cut(s) | 1135 |
| ApeKI | GCWGC | 2 cut(s) | 825, 1118 |
| ApoI | RAATTY | 1 cut(s) | 341 |
| AseI | ATTAAT | 1 cut(s) | 152 |
| AspS9I | GGNCC | 1 cut(s) | 1265 |
| AsuHPI | GGTGA | 2 cut(s) | 45, 487 |
| AsuII | TTCGAA | 1 cut(s) | 758 |
| AvaII | GGWCC | 1 cut(s) | 1265 |
| BaeGI | GKGCMC | 1 cut(s) | 866 |
| BanII | GRGCYC | 1 cut(s) | 980 |
| BbsI | GAAGAC | 2 cut(s) | 339, 531 |
| Bbv12I | GWGCWC | 3 cut(s) | 980, 1210, 1387 |
| BbvI | GCAGC | 2 cut(s) | 812, 1105 |
| BccI | CCATC | 4 cut(s) | 203, 982, 1087, 1190 |
| BceAI | ACGGC | 1 cut(s) | 1087 |
| BciT130I | CCWGG | 1 cut(s) | 731 |
| BcoDI | GTCTC | 1 cut(s) | 207 |
| BfaI | CTAG | 2 cut(s) | 1062, 1413 |
| BfmI | CTRYAG | 3 cut(s) | 105, 1119, 1364 |
| BglII | AGATCT | 1 cut(s) | 459 |
| BisI | GCNGC | 2 cut(s) | 826, 1119 |
| BlsI | GCNGC | 2 cut(s) | 827, 1120 |
| BmcAI | AGTACT | 2 cut(s) | 674, 1243 |
| Bme1390I | CCNGG | 1 cut(s) | 731 |
| Bme18I | GGWCC | 1 cut(s) | 1265 |
| BmgT120I | GGNCC | 1 cut(s) | 1265 |
| BmrFI | CCNGG | 1 cut(s) | 731 |
| BmsI | GCATC | 7 cut(s) | 631, 649, 800, 1165, 1187, 1222, 1226 |
| BpiI | GAAGAC | 2 cut(s) | 339, 531 |
| Bpu10I | CCTNAGC | 1 cut(s) | 231 |
| Bpu14I | TTCGAA | 1 cut(s) | 758 |
| BpuEI | CTTGAG | 3 cut(s) | 822, 1194, 1206 |
| BsaJI | CCNNGG | 1 cut(s) | 866 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 739, 769 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1262 |
| Bse1I | ACTGG | 1 cut(s) | 1267 |
| Bse3DI | GCAATG | 1 cut(s) | 835 |
| BseBI | CCWGG | 1 cut(s) | 731 |
| BseDI | CCNNGG | 1 cut(s) | 866 |
| BseGI | GGATG | 5 cut(s) | 664, 791, 993, 1157, 1180 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1262 |
| BseMI | GCAATG | 1 cut(s) | 835 |
| BseMII | CTCAG | 1 cut(s) | 667 |
| BseNI | ACTGG | 1 cut(s) | 1267 |
| BseRI | GAGGAG | 1 cut(s) | 416 |
| BseSI | GKGCMC | 1 cut(s) | 866 |
| BseXI | GCAGC | 2 cut(s) | 812, 1105 |
| BshFI | GGCC | 1 cut(s) | 1137 |
| BsiHKAI | GWGCWC | 3 cut(s) | 980, 1210, 1387 |
| BslFI | GGGAC | 1 cut(s) | 1298 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1262 |
| BsmAI | GTCTC | 1 cut(s) | 207 |
| BsmFI | GGGAC | 1 cut(s) | 1298 |
| BsmI | GAATGC | 1 cut(s) | 1135 |
| BsnI | GGCC | 1 cut(s) | 1137 |
| Bsp119I | TTCGAA | 1 cut(s) | 758 |
| Bsp1286I | GDGCHC | 4 cut(s) | 866, 980, 1210, 1387 |
| Bsp143I | GATC | 4 cut(s) | 313, 459, 479, 509 |
| BspANI | GGCC | 1 cut(s) | 1137 |
| BspCNI | CTCAG | 1 cut(s) | 666 |
| BspMAI | CTGCAG | 2 cut(s) | 1123, 1368 |
| BspPI | GGATC | 2 cut(s) | 487, 517 |
| BspT104I | TTCGAA | 1 cut(s) | 758 |
| BsrDI | GCAATG | 1 cut(s) | 835 |
| BsrI | ACTGG | 1 cut(s) | 1267 |
| BssECI | CCNNGG | 1 cut(s) | 866 |
| BssMI | GATC | 4 cut(s) | 313, 459, 479, 509 |
| BssT1I | CCWWGG | 1 cut(s) | 866 |
| Bst2UI | CCWGG | 1 cut(s) | 731 |
| Bst4CI | ACNGT | 2 cut(s) | 755, 1036 |
| Bst6I | CTCTTC | 2 cut(s) | 393, 423 |
| BstBI | TTCGAA | 1 cut(s) | 758 |
| BstC8I | GCNNGC | 4 cut(s) | 883, 1135, 1308, 1368 |
| BstDEI | CTNAG | 3 cut(s) | 21, 231, 653 |
| BstF5I | GGATG | 5 cut(s) | 664, 791, 993, 1157, 1180 |
| BstKTI | GATC | 4 cut(s) | 316, 462, 482, 512 |
| BstMAI | GTCTC | 1 cut(s) | 207 |
| BstMBI | GATC | 4 cut(s) | 313, 459, 479, 509 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1071, 1175, 1214 |
| BstNI | CCWGG | 1 cut(s) | 731 |
| BstNSI | RCATGY | 2 cut(s) | 1078, 1432 |
| BstSCI | CCNGG | 1 cut(s) | 729 |
| BstSFI | CTRYAG | 3 cut(s) | 105, 1119, 1364 |
| BstSLI | GKGCMC | 1 cut(s) | 866 |
| BstV1I | GCAGC | 2 cut(s) | 812, 1105 |
| BstV2I | GAAGAC | 2 cut(s) | 339, 531 |
| BstX2I | RGATCY | 2 cut(s) | 459, 509 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 947, 1196 |
| BstYI | RGATCY | 2 cut(s) | 459, 509 |
| BsuRI | GGCC | 1 cut(s) | 1137 |
| BtsCI | GGATG | 5 cut(s) | 664, 791, 993, 1157, 1180 |
| Cac8I | GCNNGC | 4 cut(s) | 883, 1135, 1308, 1368 |
| Cfr13I | GGNCC | 1 cut(s) | 1265 |
| Csp6I | GTAC | 2 cut(s) | 673, 1242 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 931, 966 |
| CviAII | CATG | 6 cut(s) | 601, 847, 1007, 1075, 1203, 1429 |
| CviQI | GTAC | 2 cut(s) | 673, 1242 |
| DdeI | CTNAG | 3 cut(s) | 21, 231, 653 |
| DpnI | GATC | 4 cut(s) | 315, 461, 481, 511 |
| DpnII | GATC | 4 cut(s) | 313, 459, 479, 509 |
| Eam1104I | CTCTTC | 2 cut(s) | 393, 423 |
| EarI | CTCTTC | 2 cut(s) | 393, 423 |
| Ecl136II | GAGCTC | 1 cut(s) | 978 |
| Eco130I | CCWWGG | 1 cut(s) | 866 |
| Eco24I | GRGCYC | 1 cut(s) | 980 |
| Eco32I | GATATC | 1 cut(s) | 493 |
| Eco47I | GGWCC | 1 cut(s) | 1265 |
| Eco53kI | GAGCTC | 1 cut(s) | 978 |
| EcoICRI | GAGCTC | 1 cut(s) | 978 |
| EcoRI | GAATTC | 1 cut(s) | 341 |
| EcoRII | CCWGG | 1 cut(s) | 729 |
| EcoRV | GATATC | 1 cut(s) | 493 |
| EcoT14I | CCWWGG | 1 cut(s) | 866 |
| EcoT22I | ATGCAT | 2 cut(s) | 793, 1180 |
| EcoT38I | GRGCYC | 1 cut(s) | 980 |
| ErhI | CCWWGG | 1 cut(s) | 866 |
| FaeI | CATG | 6 cut(s) | 604, 850, 1010, 1078, 1206, 1432 |
| FaqI | GGGAC | 1 cut(s) | 1298 |
| FatI | CATG | 6 cut(s) | 600, 846, 1006, 1074, 1202, 1428 |
| Fnu4HI | GCNGC | 2 cut(s) | 826, 1119 |
| FokI | GGATG | 5 cut(s) | 671, 778, 1000, 1164, 1187 |
| FriOI | GRGCYC | 1 cut(s) | 980 |
| Fsp4HI | GCNGC | 2 cut(s) | 826, 1119 |
| FspBI | CTAG | 2 cut(s) | 1062, 1413 |
| GluI | GCNGC | 2 cut(s) | 826, 1119 |
| HaeIII | GGCC | 1 cut(s) | 1137 |
| Hin1II | CATG | 6 cut(s) | 604, 850, 1010, 1078, 1206, 1432 |
| HincII | GTYRAC | 2 cut(s) | 304, 1290 |
| HindII | GTYRAC | 2 cut(s) | 304, 1290 |
| HinfI | GANTC | 4 cut(s) | 273, 649, 1291, 1329 |
| HphI | GGTGA | 2 cut(s) | 45, 487 |
| Hpy166II | GTNNAC | 2 cut(s) | 304, 1290 |
| Hpy188I | TCNGA | 6 cut(s) | 318, 466, 484, 514, 1148, 1231 |
| Hpy188III | TCNNGA | 3 cut(s) | 638, 839, 1281 |
| Hpy8I | GTNNAC | 2 cut(s) | 304, 1290 |
| HpyAV | CCTTC | 4 cut(s) | 119, 172, 500, 688 |
| HpyCH4III | ACNGT | 2 cut(s) | 755, 1036 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1071, 1175, 1214 |
| HpyF3I | CTNAG | 3 cut(s) | 21, 231, 653 |
| Hsp92II | CATG | 6 cut(s) | 604, 850, 1010, 1078, 1206, 1432 |
| Kzo9I | GATC | 4 cut(s) | 313, 459, 479, 509 |
| LmnI | GCTCC | 2 cut(s) | 747, 1214 |
| Lsp1109I | GCAGC | 2 cut(s) | 812, 1105 |
| LweI | GCATC | 7 cut(s) | 631, 649, 800, 1165, 1187, 1222, 1226 |
| MaeI | CTAG | 2 cut(s) | 1062, 1413 |
| MaeIII | GTNAC | 1 cut(s) | 51 |
| MalI | GATC | 4 cut(s) | 315, 461, 481, 511 |
| MboI | GATC | 4 cut(s) | 313, 459, 479, 509 |
| MfeI | CAATTG | 1 cut(s) | 499 |
| MflI | RGATCY | 2 cut(s) | 459, 509 |
| MhlI | GDGCHC | 4 cut(s) | 866, 980, 1210, 1387 |
| MluCI | AATT | 8 cut(s) | 341, 499, 516, 538, 612, 663, 1027, 1421 |
| MlyI | GAGTC | 2 cut(s) | 643, 1285 |
| MmeI | TCCRAC | 1 cut(s) | 725 |
| MnlI | CCTC | 9 cut(s) | 322, 394, 481, 514, 1008, 1033, 1142, 1350, 1362 |
| Mph1103I | ATGCAT | 2 cut(s) | 793, 1180 |
| MseI | TTAA | 7 cut(s) | 152, 174, 474, 576, 684, 921, 1424 |
| MslI | CAYNNNNRTG | 2 cut(s) | 945, 1433 |
| MspA1I | CMGCKG | 1 cut(s) | 1310 |
| MspR9I | CCNGG | 1 cut(s) | 731 |
| MunI | CAATTG | 1 cut(s) | 499 |
| Mva1269I | GAATGC | 1 cut(s) | 1135 |
| MvaI | CCWGG | 1 cut(s) | 731 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1071, 1175, 1214 |
| NdeII | GATC | 4 cut(s) | 313, 459, 479, 509 |
| NlaIII | CATG | 6 cut(s) | 604, 850, 1010, 1078, 1206, 1432 |
| NmuCI | GTSAC | 1 cut(s) | 51 |
| NsiI | ATGCAT | 2 cut(s) | 793, 1180 |
| NspI | RCATGY | 2 cut(s) | 1078, 1432 |
| NspV | TTCGAA | 1 cut(s) | 758 |
| OliI | CACNNNNGTG | 1 cut(s) | 945 |
| PctI | GAATGC | 1 cut(s) | 1135 |
| PfeI | GAWTC | 2 cut(s) | 273, 1329 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1262 |
| PkrI | GCNGC | 2 cut(s) | 827, 1120 |
| PleI | GAGTC | 2 cut(s) | 643, 1285 |
| PpsI | GAGTC | 2 cut(s) | 643, 1285 |
| PshBI | ATTAAT | 1 cut(s) | 152 |
| Psp124BI | GAGCTC | 1 cut(s) | 980 |
| Psp6I | CCWGG | 1 cut(s) | 729 |
| PspGI | CCWGG | 1 cut(s) | 729 |
| PspPI | GGNCC | 1 cut(s) | 1265 |
| PstI | CTGCAG | 2 cut(s) | 1123, 1368 |
| PsuI | RGATCY | 2 cut(s) | 459, 509 |
| PvuII | CAGCTG | 1 cut(s) | 1310 |
| RsaI | GTAC | 2 cut(s) | 674, 1243 |
| RsaNI | GTAC | 2 cut(s) | 673, 1242 |
| RseI | CAYNNNNRTG | 2 cut(s) | 945, 1433 |
| SacI | GAGCTC | 1 cut(s) | 980 |
| SaqAI | TTAA | 7 cut(s) | 152, 174, 474, 576, 684, 921, 1424 |
| SatI | GCNGC | 2 cut(s) | 826, 1119 |
| Sau3AI | GATC | 4 cut(s) | 313, 459, 479, 509 |
| Sau96I | GGNCC | 1 cut(s) | 1265 |
| ScaI | AGTACT | 2 cut(s) | 674, 1243 |
| SchI | GAGTC | 2 cut(s) | 643, 1285 |
| ScrFI | CCNGG | 1 cut(s) | 731 |
| SduI | GDGCHC | 4 cut(s) | 866, 980, 1210, 1387 |
| SfaNI | GCATC | 7 cut(s) | 631, 649, 800, 1165, 1187, 1222, 1226 |
| SfcI | CTRYAG | 3 cut(s) | 105, 1119, 1364 |
| SfuI | TTCGAA | 1 cut(s) | 758 |
| SinI | GGWCC | 1 cut(s) | 1265 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 945, 1433 |
| SmlI | CTYRAG | 3 cut(s) | 837, 1209, 1221 |
| SmoI | CTYRAG | 3 cut(s) | 837, 1209, 1221 |
| Sse9I | AATT | 8 cut(s) | 341, 499, 516, 538, 612, 663, 1027, 1421 |
| SspMI | CTAG | 2 cut(s) | 1062, 1413 |
| SstI | GAGCTC | 1 cut(s) | 980 |
| StyD4I | CCNGG | 1 cut(s) | 729 |
| StyI | CCWWGG | 1 cut(s) | 866 |
| TaaI | ACNGT | 2 cut(s) | 755, 1036 |
| TaqI | TCGA | 3 cut(s) | 123, 271, 758 |
| TasI | AATT | 8 cut(s) | 341, 499, 516, 538, 612, 663, 1027, 1421 |
| TatI | WGTACW | 2 cut(s) | 672, 1241 |
| TfiI | GAWTC | 2 cut(s) | 273, 1329 |
| Tru1I | TTAA | 7 cut(s) | 152, 174, 474, 576, 684, 921, 1424 |
| Tru9I | TTAA | 7 cut(s) | 152, 174, 474, 576, 684, 921, 1424 |
| TseFI | GTSAC | 1 cut(s) | 51 |
| TseI | GCWGC | 2 cut(s) | 825, 1118 |
| Tsp45I | GTSAC | 1 cut(s) | 51 |
| TspDTI | ATGAA | 6 cut(s) | 399, 617, 912, 1023, 1191, 1381 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1262 |
| VpaK11BI | GGWCC | 1 cut(s) | 1265 |
| VspI | ATTAAT | 1 cut(s) | 152 |
| XapI | RAATTY | 1 cut(s) | 341 |
| XceI | RCATGY | 2 cut(s) | 1078, 1432 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 737, 947 |
| XspI | CTAG | 2 cut(s) | 1062, 1413 |
| ZrmI | AGTACT | 2 cut(s) | 674, 1243 |
| Zsp2I | ATGCAT | 2 cut(s) | 793, 1180 |