Rh6CG426100

Domain of unknown function (DUF4091)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0008088
Physical Location & Seq
Reverse (-)
60864238 .. 60867872
3635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG426100.1

Sequence Viewer

Length: 1242 bp
ATGTTTATGAAGAGTTCTTCTGTCTCATTGTTCTCTGAGTTCTTTTCAAATAATGGGTCAGTTGATATGATGGAGGAAGATGCTATTTCAAACCTTTCAGTACGGGTGAAGATAAATGTGACTGTTTGGGACTTCATTCTTCCTGAAACTCCCTCACTTCCAGCTGTATTTGGTATATCCGATACTGTAATTGAGGATCGTTTTGGTGTTGAACATGGGACTGAGGAGTGGTACGAGGCATTGGATCAGCATTTTAAGTGGCTTCTTCAATATAGAATCAGTCCATATTTTTGCCGATGGGGTGATAGCATGCGTGTATTGACATATACCTGCCCTTGGCCAGCTGATCATCCAAAATCAGATGAATATTTTTCAGACCCACGATTAGCAGCCTATGCCTTGCCATATAGTCGATCTGTCTCTGGTGGTGACGCAGCGAAGGAGTACTCGCAGAAACAAATTGAGATATTGAGGACAAAGTCTCACTGGAAGAAAGCATATTTTTATTTGTGGGATGAGCCTTTGAATTTGGAGCAATATGAGTCCCTCCTCAACTTGGCCAAAGAGATCCATGCTTATGCTCCGGATGCTCGTGTCTTAACTACTTACTACTGTGGGCCAAGTGATGCCCCTCTTGCACCTACTCCTTTTGAGGCTTTTGTTAAAGTTCCTAAGTTTCTGCGCCCACATACTCAAATTTACTGTACAAGTGAATGGGTGCTTGGGAATCGAGAGGATTTGGTGAAGGATATTATTGCAGAAATGCAACCTGAAAATGGCGAGGAATGGTGGACTTACGTGTGCATGGGACCATCTGACCCCCATCCCAACTGGCACCTTGGGATGCGAGGTACGCAACATCGAGCTGTAATGTGGCGTGTATGGAAAGAAGGTGGAACAGGTTTCTTATACTGGGGTGCCAATTGCTATGAGAAGGCAACTGTTCCCAGTGCAGAGATTAGATTCAGGCGTGGTCTCCCCCCTGGAGATGGAGTTTTGTTTTACCCTGGTAAGGTGTTCTCATCATCAAATGAACCAGTTGCTTCAGTCAGACTAGAGCGCATTCTCAGTGGATTACAGGACATTGAATATCTCTCACTCTATGCTTCGAGATATGGTAGAGATGAAGGGCTTGCTCTCCTTGAGAAGACAGGTTTGTACTTGGGTCCTGAGCGTTACACGCATGAGCATATGCCAGTTGATGTAATGCGGGGCGAGATCTTCAATGCATGTCGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4091

Protein Analysis

413

Amino Acids

47.53

Weight (kDa)

5.33

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GH123_cat PF13320 229 - 366 2.5e-14 Glycoside hydrolase 123, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 338
AccB1I GGYRCC 2 cut(s) 834, 917
AccIII TCCGGA 1 cut(s) 583
AciI CCGC 1 cut(s) 1210
AclWI GGATC 3 cut(s) 204, 252, 562
AcoI YGGCCR 2 cut(s) 338, 558
AcsI RAATTY 2 cut(s) 526, 696
AcuI CTGAAG 1 cut(s) 1029
AfaI GTAC 6 cut(s) 102, 233, 446, 706, 853, 1160
AfiI CCNNNNNNNGG 5 cut(s) 336, 556, 776, 989, 1012
AflIII ACRYGT 1 cut(s) 798
AgsI TTSAA 7 cut(s) 48, 90, 212, 269, 526, 1088, 1225
AjnI CCWGG 2 cut(s) 982, 1006
AjuI GAANNNNNNNTTGG 2 cut(s) 705, 737
AluBI AGCT 3 cut(s) 164, 344, 866
AluI AGCT 3 cut(s) 164, 344, 866
Alw26I GTCTC 4 cut(s) 28, 424, 486, 980
AlwI GGATC 3 cut(s) 204, 252, 562
Aor13HI TCCGGA 1 cut(s) 583
AoxI GGCC 3 cut(s) 338, 558, 617
ApeKI GCWGC 2 cut(s) 389, 434
ApoI RAATTY 2 cut(s) 526, 696
ArsI GACNNNNNNTTYG 2 cut(s) 41, 73
AspLEI GCGC 2 cut(s) 684, 1062
AspS9I GGNCC 3 cut(s) 617, 809, 1166
AsuHPI GGTGA 4 cut(s) 118, 314, 440, 754
AvaII GGWCC 2 cut(s) 809, 1166
BalI TGGCCA 2 cut(s) 340, 560
BanI GGYRCC 2 cut(s) 834, 917
BauI CACGAG 1 cut(s) 591
BbsI GAAGAC 1 cut(s) 1154
BbvI GCAGC 2 cut(s) 401, 446
BccI CCATC 5 cut(s) 64, 291, 820, 831, 983
BciT130I CCWGG 2 cut(s) 984, 1008
BclI TGATCA 1 cut(s) 346
BcoDI GTCTC 4 cut(s) 28, 424, 486, 980
BfaI CTAG 1 cut(s) 1055
BfuAI ACCTGC 1 cut(s) 338
BglII AGATCT 1 cut(s) 1218
BisI GCNGC 2 cut(s) 390, 435
BlsI GCNGC 2 cut(s) 391, 436
BmcAI AGTACT 1 cut(s) 446
Bme1390I CCNGG 2 cut(s) 984, 1008
Bme18I GGWCC 2 cut(s) 809, 1166
BmgT120I GGNCC 3 cut(s) 617, 809, 1166
BmiI GGNNCC 4 cut(s) 810, 836, 919, 1167
BmrFI CCNGG 2 cut(s) 984, 1008
BmrI ACTGGG 2 cut(s) 922, 942
BmsI GCATC 4 cut(s) 70, 577, 616, 834
BmuI ACTGGG 2 cut(s) 922, 942
BpiI GAAGAC 1 cut(s) 1154
BpmI CTGGAG 1 cut(s) 1005
Bpu10I CCTNAGC 1 cut(s) 1170
BpuEI CTTGAG 1 cut(s) 1163
BsaAI YACGTR 1 cut(s) 799
BsaI GGTCTC 1 cut(s) 980
BsaJI CCNNGG 4 cut(s) 335, 838, 982, 1006
BsaWI WCCGGW 1 cut(s) 583
BsaXI ACNNNNNCTCC 2 cut(s) 978, 1008
Bsc4I CCNNNNNNNGG 5 cut(s) 336, 556, 776, 989, 1012
Bse1I ACTGG 6 cut(s) 491, 836, 917, 948, 1037, 1196
BseAI TCCGGA 1 cut(s) 583
BseBI CCWGG 2 cut(s) 984, 1008
BseDI CCNNGG 4 cut(s) 335, 838, 982, 1006
BseGI GGATG 5 cut(s) 349, 520, 592, 823, 849
BseLI CCNNNNNNNGG 5 cut(s) 336, 556, 776, 989, 1012
BseMII CTCAG 4 cut(s) 27, 213, 1081, 1161
BseNI ACTGG 6 cut(s) 491, 836, 917, 948, 1037, 1196
BseRI GAGGAG 2 cut(s) 239, 539
BseXI GCAGC 2 cut(s) 401, 446
BsgI GTGCAG 1 cut(s) 972
BshFI GGCC 3 cut(s) 340, 560, 619
BshNI GGYRCC 2 cut(s) 834, 917
BsiSI CCGG 1 cut(s) 584
BslFI GGGAC 4 cut(s) 143, 232, 529, 822
BslI CCNNNNNNNGG 5 cut(s) 336, 556, 776, 989, 1012
BsmAI GTCTC 4 cut(s) 28, 424, 486, 980
BsmFI GGGAC 4 cut(s) 143, 232, 529, 822
BsmI GAATGC 1 cut(s) 1062
BsnI GGCC 3 cut(s) 340, 560, 619
Bso31I GGTCTC 1 cut(s) 980
Bsp13I TCCGGA 1 cut(s) 583
Bsp1407I TGTACA 1 cut(s) 704
Bsp143I GATC 6 cut(s) 196, 244, 346, 413, 567, 1218
BspACI CCGC 1 cut(s) 1210
BspANI GGCC 3 cut(s) 340, 560, 619
BspCNI CTCAG 4 cut(s) 28, 214, 1080, 1162
BspEI TCCGGA 1 cut(s) 583
BspLI GGNNCC 4 cut(s) 810, 836, 919, 1167
BspMI ACCTGC 1 cut(s) 338
BspPI GGATC 3 cut(s) 204, 252, 562
BspT107I GGYRCC 2 cut(s) 834, 917
BspTNI GGTCTC 1 cut(s) 980
BsrGI TGTACA 1 cut(s) 704
BsrI ACTGG 6 cut(s) 491, 836, 917, 948, 1037, 1196
BssECI CCNNGG 4 cut(s) 335, 838, 982, 1006
BssMI GATC 6 cut(s) 196, 244, 346, 413, 567, 1218
BssSI CACGAG 1 cut(s) 591
BssT1I CCWWGG 2 cut(s) 335, 838
Bst2BI CACGAG 1 cut(s) 591
Bst2UI CCWGG 2 cut(s) 984, 1008
Bst4CI ACNGT 5 cut(s) 124, 187, 614, 704, 943
Bst6I CTCTTC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 395
BstAUI TGTACA 1 cut(s) 704
BstBAI YACGTR 1 cut(s) 799
BstC8I GCNNGC 3 cut(s) 311, 342, 1134
BstDEI CTNAG 5 cut(s) 36, 222, 672, 1067, 1170
BstF5I GGATG 5 cut(s) 349, 520, 592, 823, 849
BstHHI GCGC 2 cut(s) 684, 1062
BstKTI GATC 6 cut(s) 199, 247, 349, 416, 570, 1221
BstMAI GTCTC 4 cut(s) 28, 424, 486, 980
BstMBI GATC 6 cut(s) 196, 244, 346, 413, 567, 1218
BstMWI GCNNNNNNNGC 5 cut(s) 395, 587, 635, 853, 1180
BstNI CCWGG 2 cut(s) 984, 1008
BstNSI RCATGY 2 cut(s) 313, 1233
BstSCI CCNGG 2 cut(s) 982, 1006
BstV1I GCAGC 2 cut(s) 401, 446
BstV2I GAAGAC 1 cut(s) 1154
BstX2I RGATCY 2 cut(s) 567, 1218
BstYI RGATCY 2 cut(s) 567, 1218
BsuRI GGCC 3 cut(s) 340, 560, 619
BtsCI GGATG 5 cut(s) 349, 520, 592, 823, 849
BtsIMutI CAGTG 3 cut(s) 484, 955, 1075
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 3 cut(s) 311, 342, 1134
CfoI GCGC 2 cut(s) 684, 1062
Cfr13I GGNCC 3 cut(s) 617, 809, 1166
CseI GACGC 1 cut(s) 440
Csp6I GTAC 6 cut(s) 101, 232, 445, 705, 852, 1159
CviAII CATG 6 cut(s) 215, 310, 572, 805, 1184, 1230
CviQI GTAC 6 cut(s) 101, 232, 445, 705, 852, 1159
DdeI CTNAG 5 cut(s) 36, 222, 672, 1067, 1170
DpnI GATC 6 cut(s) 198, 246, 348, 415, 569, 1220
DpnII GATC 6 cut(s) 196, 244, 346, 413, 567, 1218
EaeI YGGCCR 2 cut(s) 338, 558
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco130I CCWWGG 2 cut(s) 335, 838
Eco31I GGTCTC 1 cut(s) 980
Eco47I GGWCC 2 cut(s) 809, 1166
Eco57I CTGAAG 1 cut(s) 1029
EcoO109I RGGNCCY 1 cut(s) 1166
EcoRII CCWGG 2 cut(s) 982, 1006
EcoT14I CCWWGG 2 cut(s) 335, 838
EcoT22I ATGCAT 1 cut(s) 1231
ErhI CCWWGG 2 cut(s) 335, 838
FaeI CATG 6 cut(s) 218, 313, 575, 808, 1187, 1233
FaqI GGGAC 4 cut(s) 143, 232, 529, 822
FatI CATG 6 cut(s) 214, 309, 571, 804, 1183, 1229
FauI CCCGC 1 cut(s) 1203
FauNDI CATATG 1 cut(s) 1191
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 2 cut(s) 390, 435
FokI GGATG 5 cut(s) 336, 527, 599, 810, 856
Fsp4HI GCNGC 2 cut(s) 390, 435
FspBI CTAG 1 cut(s) 1055
GlaI GCGC 2 cut(s) 683, 1061
GluI GCNGC 2 cut(s) 390, 435
GsuI CTGGAG 1 cut(s) 1005
HaeIII GGCC 3 cut(s) 340, 560, 619
HapII CCGG 1 cut(s) 584
HgaI GACGC 1 cut(s) 440
HhaI GCGC 2 cut(s) 684, 1062
Hin1II CATG 6 cut(s) 218, 313, 575, 808, 1187, 1233
Hin6I GCGC 2 cut(s) 682, 1060
HinP1I GCGC 2 cut(s) 682, 1060
HinfI GANTC 4 cut(s) 276, 542, 727, 963
HpaII CCGG 1 cut(s) 584
HphI GGTGA 4 cut(s) 118, 314, 440, 754
Hpy166II GTNNAC 1 cut(s) 792
Hpy188I TCNGA 6 cut(s) 37, 181, 361, 376, 817, 1052
Hpy188III TCNNGA 6 cut(s) 143, 584, 731, 1110, 1169, 1239
Hpy8I GTNNAC 1 cut(s) 792
HpyAV CCTTC 5 cut(s) 433, 739, 884, 928, 1121
HpyCH4III ACNGT 5 cut(s) 124, 187, 614, 704, 943
HpyCH4IV ACGT 1 cut(s) 798
HpyCH4V TGCA 6 cut(s) 638, 758, 766, 804, 953, 1229
HpyF10VI GCNNNNNNNGC 5 cut(s) 395, 587, 635, 853, 1180
HpyF3I CTNAG 5 cut(s) 36, 222, 672, 1067, 1170
HpySE526I ACGT 1 cut(s) 798
Hsp92II CATG 6 cut(s) 218, 313, 575, 808, 1187, 1233
HspAI GCGC 2 cut(s) 682, 1060
Kpn2I TCCGGA 1 cut(s) 583
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 6 cut(s) 196, 244, 346, 413, 567, 1218
LmnI GCTCC 2 cut(s) 532, 586
Lsp1109I GCAGC 2 cut(s) 401, 446
LweI GCATC 4 cut(s) 70, 577, 616, 834
MaeI CTAG 1 cut(s) 1055
MaeII ACGT 1 cut(s) 798
MaeIII GTNAC 3 cut(s) 118, 428, 1175
MalI GATC 6 cut(s) 198, 246, 348, 415, 569, 1220
MboI GATC 6 cut(s) 196, 244, 346, 413, 567, 1218
MboII GAAGA 9 cut(s) 9, 22, 89, 121, 131, 257, 502, 1159, 1213
MfeI CAATTG 1 cut(s) 922
MflI RGATCY 2 cut(s) 567, 1218
MlsI TGGCCA 2 cut(s) 340, 560
MluCI AATT 5 cut(s) 189, 459, 526, 696, 922
MluNI TGGCCA 2 cut(s) 340, 560
MlyI GAGTC 1 cut(s) 551
Mox20I TGGCCA 2 cut(s) 340, 560
Mph1103I ATGCAT 1 cut(s) 1231
MroI TCCGGA 1 cut(s) 583
MscI TGGCCA 2 cut(s) 340, 560
MseI TTAA 3 cut(s) 255, 599, 663
MslI CAYNNNNRTG 1 cut(s) 576
Msp20I TGGCCA 2 cut(s) 340, 560
MspA1I CMGCKG 2 cut(s) 164, 344
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 2 cut(s) 984, 1008
MunI CAATTG 1 cut(s) 922
Mva1269I GAATGC 1 cut(s) 1062
MvaI CCWGG 2 cut(s) 984, 1008
MwoI GCNNNNNNNGC 5 cut(s) 395, 587, 635, 853, 1180
NdeI CATATG 1 cut(s) 1191
NdeII GATC 6 cut(s) 196, 244, 346, 413, 567, 1218
NlaIII CATG 6 cut(s) 218, 313, 575, 808, 1187, 1233
NlaIV GGNNCC 4 cut(s) 810, 836, 919, 1167
NmuCI GTSAC 2 cut(s) 118, 428
NsiI ATGCAT 1 cut(s) 1231
NspI RCATGY 2 cut(s) 313, 1233
PaeI GCATGC 1 cut(s) 313
PctI GAATGC 1 cut(s) 1062
PfeI GAWTC 3 cut(s) 276, 727, 963
PflFI GACNNNGTC 1 cut(s) 478
PkrI GCNGC 2 cut(s) 391, 436
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
Ppu21I YACGTR 1 cut(s) 799
PpuMI RGGWCCY 1 cut(s) 1166
Psp5II RGGWCCY 1 cut(s) 1166
Psp6I CCWGG 2 cut(s) 982, 1006
PspGI CCWGG 2 cut(s) 982, 1006
PspN4I GGNNCC 4 cut(s) 810, 836, 919, 1167
PspPI GGNCC 3 cut(s) 617, 809, 1166
PspPPI RGGWCCY 1 cut(s) 1166
PsuI RGATCY 2 cut(s) 567, 1218
PsyI GACNNNGTC 1 cut(s) 478
PvuII CAGCTG 2 cut(s) 164, 344
RsaI GTAC 6 cut(s) 102, 233, 446, 706, 853, 1160
RsaNI GTAC 6 cut(s) 101, 232, 445, 705, 852, 1159
RseI CAYNNNNRTG 1 cut(s) 576
SaqAI TTAA 3 cut(s) 255, 599, 663
SatI GCNGC 2 cut(s) 390, 435
Sau3AI GATC 6 cut(s) 196, 244, 346, 413, 567, 1218
Sau96I GGNCC 3 cut(s) 617, 809, 1166
ScaI AGTACT 1 cut(s) 446
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 2 cut(s) 984, 1008
SfaNI GCATC 4 cut(s) 70, 577, 616, 834
SinI GGWCC 2 cut(s) 809, 1166
SmiMI CAYNNNNRTG 1 cut(s) 576
SmlI CTYRAG 1 cut(s) 1142
SmoI CTYRAG 1 cut(s) 1142
SphI GCATGC 1 cut(s) 313
Sse9I AATT 5 cut(s) 189, 459, 526, 696, 922
SsiI CCGC 1 cut(s) 1210
SspI AATATT 1 cut(s) 368
SspMI CTAG 1 cut(s) 1055
StyD4I CCNGG 2 cut(s) 982, 1006
StyI CCWWGG 2 cut(s) 335, 838
TaaI ACNGT 5 cut(s) 124, 187, 614, 704, 943
TaiI ACGT 1 cut(s) 801
TaqI TCGA 4 cut(s) 412, 730, 862, 1109
TaqII GACCGA 1 cut(s) 1224
TasI AATT 5 cut(s) 189, 459, 526, 696, 922
TatI WGTACW 3 cut(s) 444, 704, 1158
TfiI GAWTC 3 cut(s) 276, 727, 963
Tru1I TTAA 3 cut(s) 255, 599, 663
Tru9I TTAA 3 cut(s) 255, 599, 663
TscAI CASTG 3 cut(s) 491, 955, 1075
TseFI GTSAC 2 cut(s) 118, 428
TseI GCWGC 2 cut(s) 389, 434
Tsp45I GTSAC 2 cut(s) 118, 428
TspDTI ATGAA 5 cut(s) 23, 124, 378, 1047, 1140
TspRI CASTG 3 cut(s) 491, 955, 1075
Tth111I GACNNNGTC 1 cut(s) 478
VpaK11BI GGWCC 2 cut(s) 809, 1166
XapI RAATTY 2 cut(s) 526, 696
XceI RCATGY 2 cut(s) 313, 1233
XspI CTAG 1 cut(s) 1055
ZrmI AGTACT 1 cut(s) 446
Zsp2I ATGCAT 1 cut(s) 1231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.