Rh7AG111200
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0019095
Physical Location & Seq
Forward (+)
8741163 .. 8741922
760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG111200.1

Sequence Viewer

Length: 546 bp
ATGATTCAGTTTGATGTGAACTTGACTGAAAACTATAGAAGGTTTGATTTTGATGATAATATGCAGCTTTACAAAGGTAGACTAAAGAATGGGATCCAAGTTGTTATTAGGTGCCTGCTTGTATCAAAGAAATACACAATTCGAAATCTTAAACTCTTCGGTTGGATTTTGCTTGCCAAGCTTCGTCACCCGTATTTAGTATACCTTTTACGACACCGCCTCGATGGTGGTGGAGATGATTACAGTGTGAACAAGGTGTATCTTGTATCTGAGTATGTGGCAAATGGGACCTTTCGTGCTAAACTCTCTGGTAGGCCTGAAAAAGTTCTCAACTGGCCACGAAGATTGTCAGTCCTCATCGGTGTGGCCAAGGCTGTGCCCTTCCTACATACTGGAATTATTCCAGGTTTCTTGAGCAACCGGCTGAAGACGAACAACATCTTGCTCAATGAGCATGATAATGCAAAATTGAGCAACTACGGACTGTCCATTATCTCAGAAGAAACTGATAAGTCTATGGCAAACGAAGGCCGTAAGTCATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

181

Amino Acids

20.9

Weight (kDa)

9.89

Isoelectric Point (pI)

26.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 24 - 177 6.4e-10 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 57 - 172 1.5e-08 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019095)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0014601.1_g000015
rosa_samantha Rh7AG111200 Rh7AG111300 Rh7BG114100 Rh7BG114200 Rh7CG116100 Rh7DG115000 Rh7DG115100
rosa_wichuraiana Rw7G009710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 111
AccI GTMKAC 2 cut(s) 79, 201
AciI CCGC 1 cut(s) 217
AclWI GGATC 2 cut(s) 88, 101
AcoI YGGCCR 2 cut(s) 335, 366
AcuI CTGAAG 1 cut(s) 446
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 2 cut(s) 67, 181
AluI AGCT 2 cut(s) 67, 181
AlwI GGATC 2 cut(s) 88, 101
AoxI GGCC 4 cut(s) 314, 335, 366, 529
ApeKI GCWGC 1 cut(s) 64
Asp700I GAANNNNTTC 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 179
AsuII TTCGAA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 288
BaeGI GKGCMC 1 cut(s) 381
BalI TGGCCA 2 cut(s) 337, 368
BamHI GGATCC 1 cut(s) 93
BanI GGYRCC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 434
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 516
BciT130I CCWGG 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 34
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 405
Bme18I GGWCC 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 3 cut(s) 95, 113, 289
BmrFI CCNGG 1 cut(s) 405
BpiI GAAGAC 1 cut(s) 434
Bpu14I TTCGAA 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 433
BsaJI CCNNGG 1 cut(s) 369
Bse118I RCCGGY 1 cut(s) 420
Bse1I ACTGG 2 cut(s) 338, 397
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 1 cut(s) 369
BseMII CTCAG 2 cut(s) 261, 510
BseNI ACTGG 2 cut(s) 338, 397
BseSI GKGCMC 1 cut(s) 381
BseXI GCAGC 1 cut(s) 76
BshFI GGCC 4 cut(s) 316, 337, 368, 531
BshNI GGYRCC 1 cut(s) 111
BsiSI CCGG 1 cut(s) 421
BslFI GGGAC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 4 cut(s) 316, 337, 368, 531
Bsp119I TTCGAA 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 1 cut(s) 217
BspANI GGCC 4 cut(s) 316, 337, 368, 531
BspCNI CTCAG 2 cut(s) 262, 509
BspLI GGNNCC 3 cut(s) 95, 113, 289
BspPI GGATC 2 cut(s) 88, 101
BspT104I TTCGAA 1 cut(s) 142
BspT107I GGYRCC 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 420
BsrI ACTGG 2 cut(s) 338, 397
BssAI RCCGGY 1 cut(s) 420
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 1 cut(s) 93
BssNAI GTATAC 1 cut(s) 202
BssT1I CCWWGG 1 cut(s) 369
Bst1107I GTATAC 1 cut(s) 202
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 2 cut(s) 245, 486
Bst6I CTCTTC 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 116, 174
BstDEI CTNAG 2 cut(s) 270, 496
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 2 cut(s) 178, 451
BstNI CCWGG 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 34
BstSLI GKGCMC 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 434
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BstZ17I GTATAC 1 cut(s) 202
BsuRI GGCC 4 cut(s) 316, 337, 368, 531
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 116, 174
Cfr10I RCCGGY 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 288
CspCI CAANNNNNGTGG 2 cut(s) 327, 362
CviAII CATG 2 cut(s) 455, 540
CviJI RGCY 8 cut(s) 67, 181, 316, 337, 368, 374, 424, 531
CviKI_1 RGCY 8 cut(s) 67, 181, 316, 337, 368, 374, 424, 531
DdeI CTNAG 2 cut(s) 270, 496
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
EaeI YGGCCR 2 cut(s) 335, 366
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 369
Eco147I AGGCCT 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 403
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 2 cut(s) 458, 543
FaiI YATR 8 cut(s) 36, 62, 202, 276, 390, 456, 518, 541
FaqI GGGAC 1 cut(s) 301
FatI CATG 2 cut(s) 454, 539
FblI GTMKAC 2 cut(s) 79, 201
Fnu4HI GCNGC 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 65
HaeIII GGCC 4 cut(s) 316, 337, 368, 531
HapII CCGG 1 cut(s) 421
Hin1II CATG 2 cut(s) 458, 543
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 421
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 4 cut(s) 19, 80, 202, 250
Hpy188I TCNGA 2 cut(s) 271, 499
Hpy188III TCNNGA 1 cut(s) 412
Hpy8I GTNNAC 4 cut(s) 19, 80, 202, 250
HpyAV CCTTC 3 cut(s) 33, 391, 521
HpyCH4III ACNGT 2 cut(s) 245, 486
HpyCH4V TGCA 2 cut(s) 64, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 451
HpyF3I CTNAG 2 cut(s) 270, 496
Hsp92II CATG 2 cut(s) 458, 543
Kzo9I GATC 1 cut(s) 93
LpnPI CCDG 8 cut(s) 128, 294, 319, 330, 378, 390, 417, 434
Lsp1109I GCAGC 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 185
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 4 cut(s) 148, 354, 439, 512
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 381
MlsI TGGCCA 2 cut(s) 337, 368
MluCI AATT 3 cut(s) 138, 396, 467
MluNI TGGCCA 2 cut(s) 337, 368
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 2 cut(s) 230, 365
Mox20I TGGCCA 2 cut(s) 337, 368
MroXI GAANNNNTTC 1 cut(s) 324
MscI TGGCCA 2 cut(s) 337, 368
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 2 cut(s) 362, 459
Msp20I TGGCCA 2 cut(s) 337, 368
MspI CCGG 1 cut(s) 421
MspR9I CCNGG 1 cut(s) 405
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 2 cut(s) 178, 451
NdeII GATC 1 cut(s) 93
NlaIII CATG 2 cut(s) 458, 543
NlaIV GGNNCC 3 cut(s) 95, 113, 289
NmuCI GTSAC 1 cut(s) 185
NspV TTCGAA 1 cut(s) 142
PceI AGGCCT 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 66
PpuMI RGGWCCY 1 cut(s) 288
Psp5II RGGWCCY 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 3 cut(s) 95, 113, 289
PspPI GGNCC 1 cut(s) 288
PspPPI RGGWCCY 1 cut(s) 288
PsuI RGATCY 1 cut(s) 93
RseI CAYNNNNRTG 2 cut(s) 362, 459
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 288
ScrFI CCNGG 1 cut(s) 405
SduI GDGCHC 1 cut(s) 381
SetI ASST 9 cut(s) 44, 69, 79, 113, 183, 207, 258, 293, 409
SfcI CTRYAG 1 cut(s) 34
SfuI TTCGAA 1 cut(s) 142
SinI GGWCC 1 cut(s) 288
SmiMI CAYNNNNRTG 2 cut(s) 362, 459
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
Sse9I AATT 3 cut(s) 138, 396, 467
SseBI AGGCCT 1 cut(s) 316
SsiI CCGC 1 cut(s) 217
StuI AGGCCT 1 cut(s) 316
StyD4I CCNGG 1 cut(s) 403
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 2 cut(s) 245, 486
TaqI TCGA 2 cut(s) 142, 222
TasI AATT 3 cut(s) 138, 396, 467
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 185
TspGWI ACGGA 1 cut(s) 495
TspRI CASTG 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 288
XmiI GTMKAC 2 cut(s) 79, 201
XmnI GAANNNNTTC 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.