Rh7CG116100
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0019095
Physical Location & Seq
Forward (+)
8953595 .. 8957407
3813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG116100.1

Sequence Viewer

Length: 1158 bp
ATGCCGTTTTGGCCGAGCTGTCCGACCGGGTTTTCGCCGGCAGGGGCGTTCAGGATTTTTTCGGCTGAGAGACAAAATCTTTACAAAGGTAGACTAAAGAATGGGATCCAAGTTGTTATTAGGTGCCTGCTTGTATCAAAGAAATACACAATTCGAAATCTTAAACTCTCCGGTTGGATTTTGCTTGCCAAGGTTCGTCACCCGTATTTAGTATACCTTTTAGGACACTGCCTCGACGGTGGTGGAGATGATTACAGTGTGAACAAGGTGTATCTTGTATCTGAGTATGTGGCAAATGCGACCTTTCGTGCTAAACTCTCTGGTAGGCCTGAAAAAGTTCTCAACTGGCCACGAAGATTGTCAGTCCTCATCGGTGTGGCCAAGGCTGTGCACTTCCTACATACTGGAATTATTCCAGGTTTCTTGAGCAACCGGCTGAAGACGAACAACATCTTGCTCAATGAGCATGATAATGCAAAATTGAGCAACTACGGACTGTCCATTATCTCAGAAGAAACTGATAAGTCTATGGCAAACGAAGGCCTGTTGGAGAACAACTTGGAAGACCCCTTGCATTATGCGTCTTGCCCTCTCGGCTGGTATTGGAGGGCCTCCTTTTCGATCGGATACGATACAGGTGTGATTTCTGGGGCATTGCTCTACATACGTGAGGACTTTAGTGACGTAGACAAGATGACATGGCTGCAGGAGACCATTGTGAGTATGGCAGTTGCCGGAGCCATATTTGGTGCAGCAATTGGAGGGTGGATGAACGATGCTCTTGGCCGGAGAAAGTCAATCTTGTGTGCAGATTTTGTGTTCTTCTTTGGTGCAATAGTCATGGCTTTTGCACCAGCTCCGTGGGTGATCATAATTGGAAGAATTCTGGTTGGTTTGGGAGTGGGTATGGCTTCTATGACCTCACCAATATACATCTCAGAAGCTTCTCCTGCTAGTGTCCGAGGTGCTCTTGTTAGTACAAAAGGTTTTCTAATTACTGGAGCTCAATTTTTGGCATACCTCATCAATCTTGCATTTACCAAGACTCCTGGAACCTGGCGTTGGATGCTTGGAGTAGCCGGAGTTCCTGCTTTGGTTCAGTTAGGATTGATGTGGTCACTCCCAGAGTCTTCAAGGTGGGCTCTACAGAAAGAATAA

Protein Analysis

385

Amino Acids

42.38

Weight (kDa)

9.4

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 27 - 178 2.5e-11 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 56 - 175 1.6e-08 Protein kinase domain
MFS_1 PF07690 204 - 372 1.4e-16 Major Facilitator Superfamily
Sugar_tr PF00083 205 - 384 1.8e-48 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019095)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0014601.1_g000015
rosa_samantha Rh7AG111200 Rh7AG111300 Rh7BG114100 Rh7BG114200 Rh7CG116100 Rh7DG115000 Rh7DG115100
rosa_wichuraiana Rw7G009710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 123
AccI GTMKAC 3 cut(s) 91, 213, 687
AclWI GGATC 2 cut(s) 100, 113
AcoI YGGCCR 4 cut(s) 11, 347, 378, 784
AcsI RAATTY 1 cut(s) 882
AcuI CTGAAG 1 cut(s) 458
AfaI GTAC 1 cut(s) 979
AfiI CCNNNNNNNGG 1 cut(s) 1062
AgsI TTSAA 1 cut(s) 1134
AjnI CCWGG 3 cut(s) 415, 1048, 1055
AjuI GAANNNNNNNTTGG 2 cut(s) 1045, 1077
AluBI AGCT 4 cut(s) 18, 857, 944, 1004
AluI AGCT 4 cut(s) 18, 857, 944, 1004
Alw21I GWGCWC 3 cut(s) 393, 970, 1006
Alw26I GTCTC 2 cut(s) 64, 704
Alw44I GTGCAC 1 cut(s) 389
AlwI GGATC 2 cut(s) 100, 113
AoxI GGCC 7 cut(s) 11, 326, 347, 378, 541, 609, 784
ApaLI GTGCAC 1 cut(s) 389
ApeKI GCWGC 2 cut(s) 703, 752
ApoI RAATTY 1 cut(s) 882
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
Asp700I GAANNNNTTC 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 609
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 3 cut(s) 191, 877, 915
AsuII TTCGAA 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 393
BaeI ACNNNNGTAYC 2 cut(s) 624, 657
BalI TGGCCA 2 cut(s) 349, 380
BamHI GGATCC 1 cut(s) 105
BanI GGYRCC 1 cut(s) 123
BanII GRGCYC 2 cut(s) 1006, 1144
BbsI GAAGAC 3 cut(s) 446, 570, 1122
Bbv12I GWGCWC 3 cut(s) 393, 970, 1006
BbvI GCAGC 2 cut(s) 690, 764
BciT130I CCWGG 3 cut(s) 417, 1050, 1057
BciVI GTATCC 1 cut(s) 620
BclI TGATCA 1 cut(s) 867
BcnI CCSGG 1 cut(s) 28
BcoDI GTCTC 2 cut(s) 64, 704
BfaI CTAG 1 cut(s) 954
BfmI CTRYAG 2 cut(s) 704, 1145
BfuI GTATCC 1 cut(s) 620
BglI GCCNNNNNGGC 2 cut(s) 10, 594
BisI GCNGC 2 cut(s) 704, 753
BlsI GCNGC 2 cut(s) 705, 754
Bme1390I CCNGG 4 cut(s) 28, 417, 1050, 1057
BmgT120I GGNCC 1 cut(s) 609
BmiI GGNNCC 4 cut(s) 107, 125, 739, 1054
BmrFI CCNGG 4 cut(s) 28, 417, 1050, 1057
BmsI GCATC 2 cut(s) 766, 1056
BpiI GAAGAC 3 cut(s) 446, 570, 1122
BpmI CTGGAG 1 cut(s) 1020
Bpu14I TTCGAA 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 445
BpuMI CCSGG 1 cut(s) 28
BsaAI YACGTR 1 cut(s) 668
BsaI GGTCTC 1 cut(s) 704
BsaJI CCNNGG 4 cut(s) 189, 381, 860, 961
BsaWI WCCGGW 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 1030, 1060
Bsc4I CCNNNNNNNGG 1 cut(s) 1062
Bse118I RCCGGY 2 cut(s) 37, 432
Bse1I ACTGG 3 cut(s) 350, 409, 1003
Bse3DI GCAATG 1 cut(s) 653
BseBI CCWGG 3 cut(s) 417, 1050, 1057
BseDI CCNNGG 4 cut(s) 189, 381, 860, 961
BseGI GGATG 2 cut(s) 774, 1071
BseLI CCNNNNNNNGG 1 cut(s) 1062
BseMI GCAATG 1 cut(s) 653
BseMII CTCAG 4 cut(s) 57, 273, 522, 951
BseNI ACTGG 3 cut(s) 350, 409, 1003
BseSI GKGCMC 1 cut(s) 393
BseXI GCAGC 2 cut(s) 690, 764
BsgI GTGCAG 2 cut(s) 771, 828
Bsh1285I CGRYCG 2 cut(s) 27, 624
BshFI GGCC 7 cut(s) 13, 328, 349, 380, 543, 611, 786
BshNI GGYRCC 1 cut(s) 123
BsiEI CGRYCG 2 cut(s) 27, 624
BsiHKAI GWGCWC 3 cut(s) 393, 970, 1006
BsiSI CCGG 7 cut(s) 27, 38, 171, 433, 735, 787, 1080
BslI CCNNNNNNNGG 1 cut(s) 1062
BsmAI GTCTC 2 cut(s) 64, 704
BsnI GGCC 7 cut(s) 13, 328, 349, 380, 543, 611, 786
Bso31I GGTCTC 1 cut(s) 704
Bsp119I TTCGAA 1 cut(s) 154
Bsp1286I GDGCHC 4 cut(s) 393, 970, 1006, 1144
Bsp143I GATC 3 cut(s) 105, 621, 867
BspANI GGCC 7 cut(s) 13, 328, 349, 380, 543, 611, 786
BspCNI CTCAG 4 cut(s) 58, 274, 521, 950
BspLI GGNNCC 4 cut(s) 107, 125, 739, 1054
BspMAI CTGCAG 1 cut(s) 708
BspPI GGATC 2 cut(s) 100, 113
BspT104I TTCGAA 1 cut(s) 154
BspT107I GGYRCC 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 704
BsrDI GCAATG 1 cut(s) 653
BsrFI RCCGGY 2 cut(s) 37, 432
BsrI ACTGG 3 cut(s) 350, 409, 1003
BssAI RCCGGY 2 cut(s) 37, 432
BssECI CCNNGG 4 cut(s) 189, 381, 860, 961
BssMI GATC 3 cut(s) 105, 621, 867
BssNAI GTATAC 1 cut(s) 214
BssT1I CCWWGG 2 cut(s) 189, 381
Bst1107I GTATAC 1 cut(s) 214
Bst2UI CCWGG 3 cut(s) 417, 1050, 1057
Bst4CI ACNGT 3 cut(s) 239, 257, 498
BstBAI YACGTR 1 cut(s) 668
BstBI TTCGAA 1 cut(s) 154
BstC8I GCNNGC 3 cut(s) 39, 128, 186
BstDEI CTNAG 4 cut(s) 66, 282, 508, 937
BstDSI CCRYGG 1 cut(s) 860
BstF5I GGATG 2 cut(s) 774, 1071
BstKTI GATC 3 cut(s) 108, 624, 870
BstMAI GTCTC 2 cut(s) 64, 704
BstMBI GATC 3 cut(s) 105, 621, 867
BstMCI CGRYCG 2 cut(s) 27, 624
BstMWI GCNNNNNNNGC 5 cut(s) 10, 463, 594, 950, 1066
BstNI CCWGG 3 cut(s) 417, 1050, 1057
BstSCI CCNGG 4 cut(s) 26, 415, 1048, 1055
BstSFI CTRYAG 2 cut(s) 704, 1145
BstSLI GKGCMC 1 cut(s) 393
BstV1I GCAGC 2 cut(s) 690, 764
BstV2I GAAGAC 3 cut(s) 446, 570, 1122
BstX2I RGATCY 1 cut(s) 105
BstXI CCANNNNNNTGG 1 cut(s) 861
BstYI RGATCY 1 cut(s) 105
BstZ17I GTATAC 1 cut(s) 214
BsuI GTATCC 1 cut(s) 620
BsuRI GGCC 7 cut(s) 13, 328, 349, 380, 543, 611, 786
BtgI CCRYGG 1 cut(s) 860
BtsCI GGATG 2 cut(s) 774, 1071
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 226, 262
Cac8I GCNNGC 3 cut(s) 39, 128, 186
Cfr10I RCCGGY 2 cut(s) 37, 432
Cfr13I GGNCC 1 cut(s) 609
CseI GACGC 1 cut(s) 570
Csp6I GTAC 1 cut(s) 978
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviAII CATG 3 cut(s) 467, 699, 841
CviQI GTAC 1 cut(s) 978
DdeI CTNAG 4 cut(s) 66, 282, 508, 937
DpnI GATC 3 cut(s) 107, 623, 869
DpnII GATC 3 cut(s) 105, 621, 867
EaeI YGGCCR 4 cut(s) 11, 347, 378, 784
Ecl136II GAGCTC 1 cut(s) 1004
Eco130I CCWWGG 2 cut(s) 189, 381
Eco147I AGGCCT 2 cut(s) 328, 543
Eco24I GRGCYC 2 cut(s) 1006, 1144
Eco31I GGTCTC 1 cut(s) 704
Eco53kI GAGCTC 1 cut(s) 1004
Eco57I CTGAAG 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 1004
EcoO109I RGGNCCY 1 cut(s) 609
EcoRI GAATTC 1 cut(s) 882
EcoRII CCWGG 3 cut(s) 415, 1048, 1055
EcoT14I CCWWGG 2 cut(s) 189, 381
EcoT38I GRGCYC 2 cut(s) 1006, 1144
ErhI CCWWGG 2 cut(s) 189, 381
FaeI CATG 3 cut(s) 470, 702, 844
FalI AAGNNNNNCTT 2 cut(s) 785, 817
FatI CATG 3 cut(s) 466, 698, 840
FbaI TGATCA 1 cut(s) 867
FblI GTMKAC 3 cut(s) 91, 213, 687
Fnu4HI GCNGC 2 cut(s) 704, 753
FokI GGATG 2 cut(s) 781, 1078
FriOI GRGCYC 2 cut(s) 1006, 1144
Fsp4HI GCNGC 2 cut(s) 704, 753
FspBI CTAG 1 cut(s) 954
GluI GCNGC 2 cut(s) 704, 753
GsuI CTGGAG 1 cut(s) 1020
HaeIII GGCC 7 cut(s) 13, 328, 349, 380, 543, 611, 786
HapII CCGG 7 cut(s) 27, 38, 171, 433, 735, 787, 1080
HgaI GACGC 1 cut(s) 570
Hin1II CATG 3 cut(s) 470, 702, 844
HindIII AAGCTT 1 cut(s) 942
HinfI GANTC 2 cut(s) 1045, 1127
HpaII CCGG 7 cut(s) 27, 38, 171, 433, 735, 787, 1080
HphI GGTGA 3 cut(s) 191, 877, 915
Hpy166II GTNNAC 5 cut(s) 92, 214, 262, 391, 688
Hpy188I TCNGA 6 cut(s) 24, 283, 511, 626, 940, 962
Hpy188III TCNNGA 2 cut(s) 52, 424
Hpy8I GTNNAC 5 cut(s) 92, 214, 262, 391, 688
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 533
HpyCH4III ACNGT 3 cut(s) 239, 257, 498
HpyCH4IV ACGT 2 cut(s) 667, 684
HpyCH4V TGCA 9 cut(s) 391, 476, 574, 706, 752, 809, 833, 851, 1034
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 463, 594, 950, 1066
HpyF3I CTNAG 4 cut(s) 66, 282, 508, 937
HpySE526I ACGT 2 cut(s) 667, 684
Hsp92II CATG 3 cut(s) 470, 702, 844
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 867
Kzo9I GATC 3 cut(s) 105, 621, 867
LmnI GCTCC 3 cut(s) 737, 862, 1001
Lsp1109I GCAGC 2 cut(s) 690, 764
LweI GCATC 2 cut(s) 766, 1056
MaeI CTAG 1 cut(s) 954
MaeII ACGT 2 cut(s) 667, 684
MaeIII GTNAC 3 cut(s) 197, 680, 1116
MalI GATC 3 cut(s) 107, 623, 869
MboI GATC 3 cut(s) 105, 621, 867
MboII GAAGA 7 cut(s) 366, 451, 524, 575, 814, 891, 1122
MfeI CAATTG 1 cut(s) 756
MflI RGATCY 1 cut(s) 105
MhlI GDGCHC 4 cut(s) 393, 970, 1006, 1144
MlsI TGGCCA 2 cut(s) 349, 380
MluCI AATT 8 cut(s) 150, 408, 479, 756, 873, 882, 993, 1007
MluNI TGGCCA 2 cut(s) 349, 380
MlyI GAGTC 2 cut(s) 1039, 1136
MmeI TCCRAC 4 cut(s) 47, 155, 528, 1043
Mox20I TGGCCA 2 cut(s) 349, 380
MroNI GCCGGC 1 cut(s) 37
MroXI GAANNNNTTC 1 cut(s) 336
MscI TGGCCA 2 cut(s) 349, 380
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 2 cut(s) 374, 471
Msp20I TGGCCA 2 cut(s) 349, 380
MspI CCGG 7 cut(s) 27, 38, 171, 433, 735, 787, 1080
MspR9I CCNGG 4 cut(s) 28, 417, 1050, 1057
MunI CAATTG 1 cut(s) 756
MvaI CCWGG 3 cut(s) 417, 1050, 1057
MwoI GCNNNNNNNGC 5 cut(s) 10, 463, 594, 950, 1066
NaeI GCCGGC 1 cut(s) 39
NciI CCSGG 1 cut(s) 28
NdeII GATC 3 cut(s) 105, 621, 867
NgoMIV GCCGGC 1 cut(s) 37
NlaIII CATG 3 cut(s) 470, 702, 844
NlaIV GGNNCC 4 cut(s) 107, 125, 739, 1054
NmeAIII GCCGAG 2 cut(s) 39, 573
NmuCI GTSAC 3 cut(s) 197, 680, 1116
NspV TTCGAA 1 cut(s) 154
PceI AGGCCT 2 cut(s) 328, 543
PdiI GCCGGC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 336
PfoI TCCNGGA 1 cut(s) 1048
PkrI GCNGC 2 cut(s) 705, 754
Ple19I CGATCG 1 cut(s) 624
PleI GAGTC 2 cut(s) 1039, 1135
PpsI GAGTC 2 cut(s) 1039, 1135
Ppu21I YACGTR 1 cut(s) 668
Psp124BI GAGCTC 1 cut(s) 1006
Psp6I CCWGG 3 cut(s) 415, 1048, 1055
PspGI CCWGG 3 cut(s) 415, 1048, 1055
PspN4I GGNNCC 4 cut(s) 107, 125, 739, 1054
PspPI GGNCC 1 cut(s) 609
PsrI GAACNNNNNNTAC 2 cut(s) 1068, 1100
PstI CTGCAG 1 cut(s) 708
PsuI RGATCY 1 cut(s) 105
PvuI CGATCG 1 cut(s) 624
RsaI GTAC 1 cut(s) 979
RsaNI GTAC 1 cut(s) 978
RseI CAYNNNNRTG 2 cut(s) 374, 471
SacI GAGCTC 1 cut(s) 1006
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 2 cut(s) 704, 753
Sau3AI GATC 3 cut(s) 105, 621, 867
Sau96I GGNCC 1 cut(s) 609
SchI GAGTC 2 cut(s) 1039, 1136
ScrFI CCNGG 4 cut(s) 28, 417, 1050, 1057
SduI GDGCHC 4 cut(s) 393, 970, 1006, 1144
SfaNI GCATC 2 cut(s) 766, 1056
SfcI CTRYAG 2 cut(s) 704, 1145
SfuI TTCGAA 1 cut(s) 154
SmiMI CAYNNNNRTG 2 cut(s) 374, 471
SmlI CTYRAG 1 cut(s) 424
SmoI CTYRAG 1 cut(s) 424
Sse9I AATT 8 cut(s) 150, 408, 479, 756, 873, 882, 993, 1007
SseBI AGGCCT 2 cut(s) 328, 543
SspMI CTAG 1 cut(s) 954
SstI GAGCTC 1 cut(s) 1006
StuI AGGCCT 2 cut(s) 328, 543
StyD4I CCNGG 4 cut(s) 26, 415, 1048, 1055
StyI CCWWGG 2 cut(s) 189, 381
TaaI ACNGT 3 cut(s) 239, 257, 498
TaiI ACGT 2 cut(s) 670, 687
TaqI TCGA 3 cut(s) 154, 234, 620
TasI AATT 8 cut(s) 150, 408, 479, 756, 873, 882, 993, 1007
TatI WGTACW 1 cut(s) 977
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 2 cut(s) 233, 262
TseFI GTSAC 3 cut(s) 197, 680, 1116
TseI GCWGC 2 cut(s) 703, 752
Tsp45I GTSAC 3 cut(s) 197, 680, 1116
TspDTI ATGAA 1 cut(s) 785
TspGWI ACGGA 2 cut(s) 507, 849
TspRI CASTG 2 cut(s) 233, 262
VneI GTGCAC 1 cut(s) 389
XapI RAATTY 1 cut(s) 882
XcmI CCANNNNNNNNNTGG 1 cut(s) 721
XmiI GTMKAC 3 cut(s) 91, 213, 687
XmnI GAANNNNTTC 1 cut(s) 336
XspI CTAG 1 cut(s) 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.