Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0019095

Physical Location & Seq

Genomic Coordinates Forward (+)

9756787 .. 9757329

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG115100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCGTGAGGACTTCAGTGACGTAGACAAGATGACATGGCTGCAGGAGACCGTTGTGAGTATGGCAGTTGCCGGAGCCATATTTGGTTCTGCAATTGGAGGGTGGATGAATGATGCTCTTGGCCGGAGAAAGTCAATCTCGTGTGCAGATTTTGTGTCCTTCTTTGGTGCAATAGTCATGGCTTTTGCACCAGCTCGGTGGGTGATCATAATTGGTAGAATTCTGGTTGGTTTGGGAGTGGGTATGGCTTCTATGACCTCACCACTATACATCTCAGAAGCTTCTCCTGCTAGTATCCGAGGTGCGCTTGTTAGTACAAACGATTTTCTAATTGCTGGAGCTCAATTTTTGGCATACCTCATCAATCTTGCATTTACCAAGACTCCTGGAACCTGGCGTTGGATTCTTGGAGTAGCCGGAGTTCCTGCTTTGGTTCAGTTAGGATTGATGTGGTCACTCCCAAAGTCTTCAAGGTGGCTCTACAGAAAGAATAAGGTAGATAAAGCCAGGGCTATCTTAGAGAAAATTTATCCTGCGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

180

Amino Acids

19.58

Weight (kDa)

9.72

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	11 - 176	6.1e-50	Sugar (and other) transporter
MFS_1	PF07690	13 - 168	1.4e-16	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019095)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0014601.1_g000015
rosa_samantha	Rh7AG111200 Rh7AG111300 Rh7BG114100 Rh7BG114200 Rh7CG116100 Rh7DG115000 Rh7DG115100
rosa_wichuraiana	Rw7G009710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	24
AciI	CCGC	1 cut(s)	536
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	2 cut(s)	219, 525
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	1 cut(s)	471
AjnI	CCWGG	3 cut(s)	385, 392, 506
AjuI	GAANNNNNNNTTGG	2 cut(s)	382, 414
AluBI	AGCT	3 cut(s)	194, 281, 341
AluI	AGCT	3 cut(s)	194, 281, 341
Alw21I	GWGCWC	1 cut(s)	343
Alw26I	GTCTC	1 cut(s)	41
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	40
ApoI	RAATTY	2 cut(s)	219, 525
AspLEI	GCGC	1 cut(s)	307
AsuHPI	GGTGA	2 cut(s)	214, 252
BanII	GRGCYC	1 cut(s)	343
BauI	CACGAG	1 cut(s)	139
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	343
BbvI	GCAGC	1 cut(s)	27
BciT130I	CCWGG	3 cut(s)	387, 394, 508
BciVI	GTATCC	1 cut(s)	305
BclI	TGATCA	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	2 cut(s)	41, 481
BfuI	GTATCC	1 cut(s)	305
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme1390I	CCNGG	3 cut(s)	387, 394, 508
BmiI	GGNNCC	2 cut(s)	76, 391
BmrFI	CCNGG	3 cut(s)	387, 394, 508
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	459
BpmI	CTGGAG	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	298, 507
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
BseBI	CCWGG	3 cut(s)	387, 394, 508
BseDI	CCNNGG	2 cut(s)	298, 507
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMII	CTCAG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	27
BsgI	GTGCAG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	343
BsiSI	CCGG	3 cut(s)	72, 124, 417
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmAI	GTCTC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	123
Bso31I	GGTCTC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	1 cut(s)	204
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	287
BspLI	GGNNCC	2 cut(s)	76, 391
BspMAI	CTGCAG	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	298, 507
BssMI	GATC	1 cut(s)	204
BssSI	CACGAG	1 cut(s)	139
Bst2BI	CACGAG	1 cut(s)	139
Bst2UI	CCWGG	3 cut(s)	387, 394, 508
Bst4CI	ACNGT	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	274, 517
BstF5I	GGATG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	1 cut(s)	207
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	3 cut(s)	387, 394, 508
BstSCI	CCNGG	3 cut(s)	385, 392, 506
BstSFI	CTRYAG	2 cut(s)	41, 481
BstV1I	GCAGC	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	459
BstXI	CCANNNNNNTGG	1 cut(s)	198
BsuI	GTATCC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	2 cut(s)	36, 178
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	2 cut(s)	274, 517
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
EaeI	YGGCCR	1 cut(s)	121
Ecl136II	GAGCTC	1 cut(s)	341
Eco24I	GRGCYC	1 cut(s)	343
Eco31I	GGTCTC	1 cut(s)	41
Eco53kI	GAGCTC	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	341
EcoRI	GAATTC	1 cut(s)	219
EcoRII	CCWGG	3 cut(s)	385, 392, 506
EcoT38I	GRGCYC	1 cut(s)	343
FaeI	CATG	2 cut(s)	39, 181
FaiI	YATR	9 cut(s)	37, 62, 80, 179, 209, 245, 254, 268, 355
FatI	CATG	2 cut(s)	35, 177
FbaI	TGATCA	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	41
FokI	GGATG	1 cut(s)	118
FriOI	GRGCYC	1 cut(s)	343
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	1 cut(s)	41
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	3 cut(s)	72, 124, 417
HhaI	GCGC	1 cut(s)	307
Hin1II	CATG	2 cut(s)	39, 181
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	2 cut(s)	382, 403
HpaII	CCGG	3 cut(s)	72, 124, 417
HphI	GGTGA	2 cut(s)	214, 252
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	277, 299
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	6 cut(s)	43, 92, 146, 170, 188, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	2 cut(s)	274, 517
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	39, 181
HspAI	GCGC	1 cut(s)	305
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	2 cut(s)	74, 338
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	17, 453
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	1 cut(s)	459
MfeI	CAATTG	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	343
MluCI	AATT	6 cut(s)	93, 210, 219, 330, 344, 525
MlyI	GAGTC	1 cut(s)	376
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	4 cut(s)	92, 268, 293, 368
MspI	CCGG	3 cut(s)	72, 124, 417
MspR9I	CCNGG	3 cut(s)	387, 394, 508
MunI	CAATTG	1 cut(s)	93
MvaI	CCWGG	3 cut(s)	387, 394, 508
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	2 cut(s)	39, 181
NlaIV	GGNNCC	2 cut(s)	76, 391
NmuCI	GTSAC	2 cut(s)	17, 453
PfeI	GAWTC	1 cut(s)	403
PfoI	TCCNGGA	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	42
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp124BI	GAGCTC	1 cut(s)	343
Psp6I	CCWGG	3 cut(s)	385, 392, 506
PspGI	CCWGG	3 cut(s)	385, 392, 506
PspN4I	GGNNCC	2 cut(s)	76, 391
PsrI	GAACNNNNNNTAC	2 cut(s)	405, 437
PstI	CTGCAG	1 cut(s)	45
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SacI	GAGCTC	1 cut(s)	343
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	3 cut(s)	387, 394, 508
SduI	GDGCHC	1 cut(s)	343
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	2 cut(s)	41, 481
Sse9I	AATT	6 cut(s)	93, 210, 219, 330, 344, 525
SsiI	CCGC	1 cut(s)	536
SspMI	CTAG	1 cut(s)	291
SstI	GAGCTC	1 cut(s)	343
StyD4I	CCNGG	3 cut(s)	385, 392, 506
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	1 cut(s)	24
TasI	AATT	6 cut(s)	93, 210, 219, 330, 344, 525
TatI	WGTACW	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	403
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	2 cut(s)	17, 453
TseI	GCWGC	1 cut(s)	40
Tsp45I	GTSAC	2 cut(s)	17, 453
TspDTI	ATGAA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	22
XapI	RAATTY	2 cut(s)	219, 525
XmiI	GTMKAC	1 cut(s)	24
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.