Rh7DG115000
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0019095
Physical Location & Seq
Forward (+)
9746389 .. 9747111
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG115000.1

Sequence Viewer

Length: 453 bp
ATGATTCAGTTTGACGTGAACTTGACTGAAAACTATAGAAGGTTTGATTTTGATGATAATATGCAGCTTTACAAAGGTAGACTAAAGAATGGGATCCAAGTTGTTATTAGGTGCCTGCTTGTATCAAAGAAATACACAATTCGAAATCTTAAACTCTCCGGTTGGATTTTGCTTGCCAAGCTTCGTCACCCGTATTTAGGACACTGCCTCGACGGTGGTGGAGATGATTACAGTGTGAACAAGGTGTATCTTGTATCTGAGTATGTGGCAAATGGGACCTTTCGTGCTAAACTCTCTGGTAGGCCTGAAAAAGTTCTCAACTGGCCACGAAGATTGTCAGTCCTCATCGGTGTGGCCAAGGCTGTGCAGTGTGCACTTCCTACATACTGGAATTATTCAAGGTTTCTTGAGCAACCGGCTGAAGACGAACAGCATCTTGCTCAATTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

150

Amino Acids

17.43

Weight (kDa)

9.4

Isoelectric Point (pI)

32.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019095)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0014601.1_g000015
rosa_samantha Rh7AG111200 Rh7AG111300 Rh7BG114100 Rh7BG114200 Rh7CG116100 Rh7DG115000 Rh7DG115100
rosa_wichuraiana Rw7G009710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 111
AccI GTMKAC 1 cut(s) 79
AclWI GGATC 2 cut(s) 88, 101
AcoI YGGCCR 2 cut(s) 323, 354
AcuI CTGAAG 1 cut(s) 441
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 2 cut(s) 399, 449
AjiI CACGTC 1 cut(s) 16
AluBI AGCT 2 cut(s) 67, 181
AluI AGCT 2 cut(s) 67, 181
Alw21I GWGCWC 1 cut(s) 376
Alw44I GTGCAC 1 cut(s) 372
AlwI GGATC 2 cut(s) 88, 101
AoxI GGCC 3 cut(s) 302, 323, 354
ApaLI GTGCAC 1 cut(s) 372
ApeKI GCWGC 1 cut(s) 64
Asp700I GAANNNNTTC 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 179
AsuII TTCGAA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 276
BaeGI GKGCMC 1 cut(s) 376
BalI TGGCCA 2 cut(s) 325, 356
BamHI GGATCC 1 cut(s) 93
BanI GGYRCC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 376
BbvI GCAGC 1 cut(s) 76
BfmI CTRYAG 1 cut(s) 34
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 276
BmgBI CACGTC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 3 cut(s) 95, 113, 277
BmsI GCATC 1 cut(s) 442
BpiI GAAGAC 1 cut(s) 429
Bpu14I TTCGAA 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 357
BsaWI WCCGGW 1 cut(s) 158
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse118I RCCGGY 1 cut(s) 415
Bse1I ACTGG 2 cut(s) 326, 392
BseDI CCNNGG 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 2 cut(s) 326, 392
BseSI GKGCMC 1 cut(s) 376
BseXI GCAGC 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 386
BshFI GGCC 3 cut(s) 304, 325, 356
BshNI GGYRCC 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 376
BsiSI CCGG 2 cut(s) 159, 416
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 3 cut(s) 304, 325, 356
Bsp119I TTCGAA 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 376
Bsp143I GATC 1 cut(s) 93
BspANI GGCC 3 cut(s) 304, 325, 356
BspCNI CTCAG 1 cut(s) 250
BspLI GGNNCC 3 cut(s) 95, 113, 277
BspPI GGATC 2 cut(s) 88, 101
BspT104I TTCGAA 1 cut(s) 142
BspT107I GGYRCC 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 415
BsrI ACTGG 2 cut(s) 326, 392
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 357
Bst4CI ACNGT 2 cut(s) 215, 233
BstBI TTCGAA 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 116, 174
BstDEI CTNAG 1 cut(s) 258
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 34
BstSLI GKGCMC 1 cut(s) 376
BstV1I GCAGC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 429
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuRI GGCC 3 cut(s) 304, 325, 356
BtrI CACGTC 1 cut(s) 16
BtsI GCAGTG 2 cut(s) 202, 374
BtsIMutI CAGTG 3 cut(s) 202, 238, 374
Cac8I GCNNGC 2 cut(s) 116, 174
Cfr10I RCCGGY 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 276
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviJI RGCY 7 cut(s) 67, 181, 304, 325, 356, 362, 419
CviKI_1 RGCY 7 cut(s) 67, 181, 304, 325, 356, 362, 419
DdeI CTNAG 1 cut(s) 258
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
EaeI YGGCCR 2 cut(s) 323, 354
Eco130I CCWWGG 1 cut(s) 357
Eco147I AGGCCT 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 276
Eco57I CTGAAG 1 cut(s) 441
EcoO109I RGGNCCY 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 357
FaiI YATR 4 cut(s) 36, 62, 264, 385
FaqI GGGAC 1 cut(s) 289
FblI GTMKAC 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 65
HaeIII GGCC 3 cut(s) 304, 325, 356
HapII CCGG 2 cut(s) 159, 416
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 159, 416
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 4 cut(s) 19, 80, 238, 374
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 1 cut(s) 407
Hpy8I GTNNAC 4 cut(s) 19, 80, 238, 374
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 2 cut(s) 215, 233
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 64, 367, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 15
Kzo9I GATC 1 cut(s) 93
LpnPI CCDG 7 cut(s) 128, 172, 282, 307, 318, 373, 429
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 442
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 185
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 2 cut(s) 342, 434
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 376
MlsI TGGCCA 2 cut(s) 325, 356
MluCI AATT 3 cut(s) 138, 391, 443
MluNI TGGCCA 2 cut(s) 325, 356
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 2 cut(s) 218, 353
Mox20I TGGCCA 2 cut(s) 325, 356
MroXI GAANNNNTTC 1 cut(s) 312
MscI TGGCCA 2 cut(s) 325, 356
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 350
Msp20I TGGCCA 2 cut(s) 325, 356
MspI CCGG 2 cut(s) 159, 416
MwoI GCNNNNNNNGC 1 cut(s) 178
NdeII GATC 1 cut(s) 93
NlaIV GGNNCC 3 cut(s) 95, 113, 277
NmuCI GTSAC 1 cut(s) 185
NspV TTCGAA 1 cut(s) 142
PceI AGGCCT 1 cut(s) 304
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 66
PpuMI RGGWCCY 1 cut(s) 276
Psp5II RGGWCCY 1 cut(s) 276
PspN4I GGNNCC 3 cut(s) 95, 113, 277
PspPI GGNCC 1 cut(s) 276
PspPPI RGGWCCY 1 cut(s) 276
PsuI RGATCY 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 350
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 276
SduI GDGCHC 1 cut(s) 376
SetI ASST 9 cut(s) 18, 44, 69, 79, 113, 183, 246, 281, 404
SfaNI GCATC 1 cut(s) 442
SfcI CTRYAG 1 cut(s) 34
SfuI TTCGAA 1 cut(s) 142
SinI GGWCC 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 3 cut(s) 138, 391, 443
SseBI AGGCCT 1 cut(s) 304
StuI AGGCCT 1 cut(s) 304
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 2 cut(s) 215, 233
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 142, 210
TasI AATT 3 cut(s) 138, 391, 443
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 3 cut(s) 209, 238, 374
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 185
TspRI CASTG 3 cut(s) 209, 238, 374
VneI GTGCAC 1 cut(s) 372
VpaK11BI GGWCC 1 cut(s) 276
XmiI GTMKAC 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.