Rh7AG278600

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0021482
Physical Location & Seq
Forward (+)
29230622 .. 29232186
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG278600.1

Sequence Viewer

Length: 873 bp
ATGGATTCTGACCAATGTCAATCCCTTTACCTTGAAGTACAAAAATTCTATGAAGATCACGATATGAAATTGGGACACCAAATTCGACTGCAGTTGGTTGGCAGACAAAAATTAAACCGGGTCATGAAGGGAGATCAGAGTAATTGTGATGGAGAAATTAGAGCAGCTTGCCTCGAAGCCAAAGAAATACTCATCTGGTATGGCCTTCCTAGGTTGTTAACAGGGTCAATTCTGGCTCAAGAGATGATCAAAGCATGGCTAATGCTTCAAGTCTATCCACATTTCAAATTGAGCGCTGAGGTTGAAAGAGGTATCTGCGGAGTGCTGGCCTATAGTTGGCTGGAGTACTACTCTTCTGATCCTGATTCATCTAAAATATGGTCTGACTTCGAGAAGAAGCTTGTTGAATTTATTAAACACCAAATTGAGTCATCAGATTATGGAGAAGTATTCAGGAAAGCTAACAAAGTGGTTCATGAGTATGGTCTATGTACTAGTGCGATTGAACACATTGTACGATCAATGTATTTCAAAGTGGTGAAACAGCTCCAGTATACCAGCATTTCTGCCCCTTCAGCCAGTTCGTGGAATGATGTACGATATGATAAGATGGGAGCCTATCAAAGGCATAGCACTCGCCGGTACCTAAAGAAAACAACAGTGCAAGACTGGACAATGAGCGTACGCGAAGTGACCAATGTTAGTGGCTGGGTTTCAAGTGGATCTCGTCAGGGGGAGGATCAGATCATCACAGATGTTGTAAATTTATTGCGTAACAGAGTGGTATGTGCTGGCTGCAACAGAAGGATTAATTATGAGACTTCATATTTGGGGTGCAACCATCGTGTTTGGCATCAAGAATGCTTCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like LIM

Protein Analysis

290

Amino Acids

33.78

Weight (kDa)

8.48

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 59 - 172 3.9e-27 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021482)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0214001
rosa_samantha Rh7AG278600 Rh7CG297500 Rh7DG284100
rosa_wichuraiana Rw7G023960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 642
AccB1I GGYRCC 1 cut(s) 642
AccB7I CCANNNNNTGG 1 cut(s) 585
AccI GTMKAC 1 cut(s) 554
AccII CGCG 1 cut(s) 687
AciI CCGC 2 cut(s) 318, 868
AclWI GGATC 3 cut(s) 353, 730, 747
AcsI RAATTY 4 cut(s) 44, 81, 407, 763
AcuI CTGAAG 1 cut(s) 558
AfaI GTAC 7 cut(s) 39, 347, 493, 516, 597, 644, 684
AfeI AGCGCT 1 cut(s) 295
AfiI CCNNNNNNNGG 3 cut(s) 336, 585, 624
AgsI TTSAA 8 cut(s) 35, 269, 286, 305, 407, 506, 532, 717
AhlI ACTAGT 1 cut(s) 494
AluBI AGCT 4 cut(s) 167, 400, 461, 547
AluI AGCT 4 cut(s) 167, 400, 461, 547
Alw26I GTCTC 1 cut(s) 812
AlwI GGATC 3 cut(s) 353, 730, 747
Aor51HI AGCGCT 1 cut(s) 295
AoxI GGCC 2 cut(s) 202, 327
ApeKI GCWGC 2 cut(s) 164, 795
ApoI RAATTY 4 cut(s) 44, 81, 407, 763
ArsI GACNNNNNNTTYG 4 cut(s) 66, 98, 811, 843
AseI ATTAAT 1 cut(s) 810
Asp718I GGTACC 1 cut(s) 642
AspA2I CCTAGG 1 cut(s) 209
AspLEI GCGC 1 cut(s) 296
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 550
AvrII CCTAGG 1 cut(s) 209
BanI GGYRCC 1 cut(s) 642
BbvCI CCTCAGC 1 cut(s) 297
BbvI GCAGC 2 cut(s) 176, 782
BccI CCATC 3 cut(s) 143, 604, 849
BcgI CGANNNNNNTGC 2 cut(s) 617, 651
BclI TGATCA 1 cut(s) 246
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 812
BcuI ACTAGT 1 cut(s) 494
BfaI CTAG 2 cut(s) 210, 495
BfmI CTRYAG 2 cut(s) 89, 331
BfoI RGCGCY 1 cut(s) 297
BisI GCNGC 2 cut(s) 165, 796
BlnI CCTAGG 1 cut(s) 209
BlsI GCNGC 2 cut(s) 166, 797
BmcAI AGTACT 1 cut(s) 347
Bme1390I CCNGG 1 cut(s) 119
BmiI GGNNCC 2 cut(s) 616, 644
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 1 cut(s) 862
BoxI GACNNNNGTC 1 cut(s) 15
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 2 cut(s) 362, 533
Bpu10I CCTNAGC 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 209
Bsc4I CCNNNNNNNGG 3 cut(s) 336, 585, 624
Bse118I RCCGGY 1 cut(s) 639
Bse1I ACTGG 3 cut(s) 550, 579, 674
BseDI CCNNGG 1 cut(s) 209
BseLI CCNNNNNNNGG 3 cut(s) 336, 585, 624
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 3 cut(s) 550, 579, 674
BseXI GCAGC 2 cut(s) 176, 782
BseYI CCCAGC 1 cut(s) 708
Bsh1236I CGCG 1 cut(s) 687
BshFI GGCC 2 cut(s) 204, 329
BshNI GGYRCC 1 cut(s) 642
BsiSI CCGG 2 cut(s) 118, 640
BsiWI CGTACG 1 cut(s) 682
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 3 cut(s) 336, 585, 624
BsmAI GTCTC 1 cut(s) 812
BsmFI GGGAC 1 cut(s) 87
BsmI GAATGC 1 cut(s) 866
BsnI GGCC 2 cut(s) 204, 329
Bsp143I GATC 8 cut(s) 55, 133, 246, 358, 518, 722, 739, 744
BspACI CCGC 2 cut(s) 318, 868
BspANI GGCC 2 cut(s) 204, 329
BspCNI CTCAG 1 cut(s) 289
BspFNI CGCG 1 cut(s) 687
BspHI TCATGA 2 cut(s) 123, 475
BspLI GGNNCC 2 cut(s) 616, 644
BspMAI CTGCAG 1 cut(s) 93
BspPI GGATC 3 cut(s) 353, 730, 747
BspT107I GGYRCC 1 cut(s) 642
BsrFI RCCGGY 1 cut(s) 639
BsrI ACTGG 3 cut(s) 550, 579, 674
BssAI RCCGGY 1 cut(s) 639
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 8 cut(s) 55, 133, 246, 358, 518, 722, 739, 744
BssNAI GTATAC 1 cut(s) 555
BssT1I CCWWGG 1 cut(s) 209
Bst1107I GTATAC 1 cut(s) 555
Bst4CI ACNGT 1 cut(s) 661
Bst6I CTCTTC 1 cut(s) 358
BstC8I GCNNGC 3 cut(s) 169, 327, 793
BstDEI CTNAG 1 cut(s) 297
BstENI CCTNNNNNAGG 1 cut(s) 622
BstFNI CGCG 1 cut(s) 687
BstH2I RGCGCY 1 cut(s) 297
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 8 cut(s) 58, 136, 249, 361, 521, 725, 742, 747
BstMAI GTCTC 1 cut(s) 812
BstMBI GATC 8 cut(s) 55, 133, 246, 358, 518, 722, 739, 744
BstMWI GCNNNNNNNGC 1 cut(s) 575
BstPAI GACNNNNGTC 1 cut(s) 15
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 2 cut(s) 89, 331
BstUI CGCG 1 cut(s) 687
BstV1I GCAGC 2 cut(s) 176, 782
BstX2I RGATCY 1 cut(s) 722
BstYI RGATCY 1 cut(s) 722
BstZ17I GTATAC 1 cut(s) 555
BsuRI GGCC 2 cut(s) 204, 329
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 3 cut(s) 169, 327, 793
CciI TCATGA 2 cut(s) 123, 475
CfoI GCGC 1 cut(s) 296
Cfr10I RCCGGY 1 cut(s) 639
Csp6I GTAC 7 cut(s) 38, 346, 492, 515, 596, 643, 683
CspCI CAANNNNNGTGG 2 cut(s) 685, 720
CviAII CATG 3 cut(s) 124, 255, 476
CviQI GTAC 7 cut(s) 38, 346, 492, 515, 596, 643, 683
DdeI CTNAG 1 cut(s) 297
DpnI GATC 8 cut(s) 57, 135, 248, 360, 520, 724, 741, 746
DpnII GATC 8 cut(s) 55, 133, 246, 358, 518, 722, 739, 744
Eam1104I CTCTTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 209
Eco47III AGCGCT 1 cut(s) 295
Eco57I CTGAAG 1 cut(s) 558
EcoNI CCTNNNNNAGG 1 cut(s) 622
EcoT14I CCWWGG 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 209
FaeI CATG 3 cut(s) 127, 258, 479
FaqI GGGAC 1 cut(s) 87
FatI CATG 3 cut(s) 123, 254, 475
FbaI TGATCA 1 cut(s) 246
FblI GTMKAC 1 cut(s) 554
Fnu4HI GCNGC 2 cut(s) 165, 796
Fsp4HI GCNGC 2 cut(s) 165, 796
FspBI CTAG 2 cut(s) 210, 495
GlaI GCGC 1 cut(s) 295
GluI GCNGC 2 cut(s) 165, 796
GsaI CCCAGC 1 cut(s) 712
GsuI CTGGAG 2 cut(s) 362, 533
HaeII RGCGCY 1 cut(s) 297
HaeIII GGCC 2 cut(s) 204, 329
HapII CCGG 2 cut(s) 118, 640
HhaI GCGC 1 cut(s) 296
Hin1II CATG 3 cut(s) 127, 258, 479
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 3 cut(s) 5, 365, 428
HpaI GTTAAC 1 cut(s) 219
HpaII CCGG 2 cut(s) 118, 640
HphI GGTGA 1 cut(s) 550
Hpy166II GTNNAC 2 cut(s) 219, 555
Hpy188I TCNGA 6 cut(s) 10, 138, 358, 385, 436, 744
Hpy188III TCNNGA 8 cut(s) 59, 124, 239, 362, 391, 454, 476, 857
Hpy8I GTNNAC 2 cut(s) 219, 555
HpyAV CCTTC 4 cut(s) 121, 215, 582, 798
HpyCH4III ACNGT 1 cut(s) 661
HpyCH4V TGCA 4 cut(s) 91, 664, 798, 837
HpyF10VI GCNNNNNNNGC 1 cut(s) 575
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 3 cut(s) 127, 258, 479
HspAI GCGC 1 cut(s) 294
KpnI GGTACC 1 cut(s) 646
Ksp22I TGATCA 1 cut(s) 246
KspAI GTTAAC 1 cut(s) 219
Kzo9I GATC 8 cut(s) 55, 133, 246, 358, 518, 722, 739, 744
LmnI GCTCC 2 cut(s) 552, 614
Lsp1109I GCAGC 2 cut(s) 176, 782
LweI GCATC 1 cut(s) 862
MaeI CTAG 2 cut(s) 210, 495
MaeIII GTNAC 2 cut(s) 691, 773
MalI GATC 8 cut(s) 57, 135, 248, 360, 520, 724, 741, 746
MboI GATC 8 cut(s) 55, 133, 246, 358, 518, 722, 739, 744
MboII GAAGA 3 cut(s) 65, 345, 406
MflI RGATCY 1 cut(s) 722
MlyI GAGTC 1 cut(s) 437
MnlI CCTC 4 cut(s) 182, 292, 302, 730
MseI TTAA 4 cut(s) 113, 218, 414, 810
MslI CAYNNNNRTG 1 cut(s) 480
MspA1I CMGCKG 1 cut(s) 870
MspI CCGG 2 cut(s) 118, 640
MspR9I CCNGG 1 cut(s) 119
Mva1269I GAATGC 1 cut(s) 866
MvnI CGCG 1 cut(s) 687
MwoI GCNNNNNNNGC 1 cut(s) 575
NciI CCSGG 1 cut(s) 119
NdeII GATC 8 cut(s) 55, 133, 246, 358, 518, 722, 739, 744
NlaIII CATG 3 cut(s) 127, 258, 479
NlaIV GGNNCC 2 cut(s) 616, 644
NmuCI GTSAC 1 cut(s) 691
PagI TCATGA 2 cut(s) 123, 475
PctI GAATGC 1 cut(s) 866
PfeI GAWTC 2 cut(s) 5, 365
Pfl23II CGTACG 1 cut(s) 682
PflMI CCANNNNNTGG 1 cut(s) 585
PkrI GCNGC 2 cut(s) 166, 797
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PshAI GACNNNNGTC 1 cut(s) 15
PshBI ATTAAT 1 cut(s) 810
PspFI CCCAGC 1 cut(s) 708
PspLI CGTACG 1 cut(s) 682
PspN4I GGNNCC 2 cut(s) 616, 644
PsrI GAACNNNNNNTAC 2 cut(s) 498, 530
PstI CTGCAG 1 cut(s) 93
PsuI RGATCY 1 cut(s) 722
RsaI GTAC 7 cut(s) 39, 347, 493, 516, 597, 644, 684
RsaNI GTAC 7 cut(s) 38, 346, 492, 515, 596, 643, 683
RseI CAYNNNNRTG 1 cut(s) 480
SaqAI TTAA 4 cut(s) 113, 218, 414, 810
SatI GCNGC 2 cut(s) 165, 796
Sau3AI GATC 8 cut(s) 55, 133, 246, 358, 518, 722, 739, 744
ScaI AGTACT 1 cut(s) 347
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 1 cut(s) 119
SetI ASST 9 cut(s) 33, 169, 215, 303, 313, 402, 463, 549, 648
SfaNI GCATC 1 cut(s) 862
SfcI CTRYAG 2 cut(s) 89, 331
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
SpeI ACTAGT 1 cut(s) 494
SsiI CCGC 2 cut(s) 318, 868
SspMI CTAG 2 cut(s) 210, 495
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 1 cut(s) 661
TaqI TCGA 3 cut(s) 85, 174, 390
TatI WGTACW 3 cut(s) 37, 345, 491
TfiI GAWTC 2 cut(s) 5, 365
Tru1I TTAA 4 cut(s) 113, 218, 414, 810
Tru9I TTAA 4 cut(s) 113, 218, 414, 810
TscAI CASTG 1 cut(s) 666
TseFI GTSAC 1 cut(s) 691
TseI GCWGC 2 cut(s) 164, 795
Tsp45I GTSAC 1 cut(s) 691
TspDTI ATGAA 6 cut(s) 66, 80, 140, 357, 464, 813
TspRI CASTG 1 cut(s) 666
Van91I CCANNNNNTGG 1 cut(s) 585
VspI ATTAAT 1 cut(s) 810
XagI CCTNNNNNAGG 1 cut(s) 622
XapI RAATTY 4 cut(s) 44, 81, 407, 763
XmaJI CCTAGG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 554
XspI CTAG 2 cut(s) 210, 495
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.