Rh7DG284100

DA1-related 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0021482
Physical Location & Seq
Reverse (-)
30953800 .. 30985089
31290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG284100.1

Sequence Viewer

Length: 1416 bp
ATGTCAAGACTTGAAAAGTGCCATCATGCTGGTCGTCTCTCCCTAATTTCTATTGATGAGAGGCACATTGTTGCTGCAGCCAATGAGGCCATGATTTTTGACCCGATTACAAAAATCTTGTCACTAGCTTTCTCTCTCATCGAGTTCATCGTCGGAACCACCACTGTCCAATCAAGTCACCAGCACTGCACATGCATAGCTCACAATTCCACAAATGACAGTCAAATGCAAACACAAGTACCCGAGTGCAATACTGCAATTTGCTCCCCAGCTCGGTTCTTCATTCTTCAGGAGTTCAGGAAGACCCAGCTTGTCAAGGAAATTGTAGCAGAATGCTCTAAGCTTCGATGCGATGTATGCCATGATTGGAAAAGTTTTATCCCGGCAGATTCAAGTCAAGCTGAGTATGTGGAACATCCTTTCTGGGGACAAAATTACTGCCCCTCTCATGAGGGCACTACTCGAAAGTGTTGTAGCTGTGAAAGATTAGAACCGAAGGACACAAAGTATTTTGCACTTGACGATGGCCGGCACCTATGTCCAGAGTGTCAAGAATCAGCAATTATGGATTCTGACCAATGTCAATCCCTTTACCTTGAAGTACAAAAATTCTATGAAGATCACAATATGAAATTGGGACACCAAATTCGACTGCAGTTGGTTGGCAGACAAAAATTAAACCGGGTCATGAAGGGAGATCAGAGTAATTGTGATGGAGAAATTAGAGCAGTCTGCCTCGAAGCCAAAGAAATACTCATCTGGTATGGCCTTCCTAGGTTGTTAACAGGGTCAATTCTGGCTCAAGAGATGATCAAAGCATGGCTAATGCTTCATGTCTATCCACATTTCAAATTGAGCGCTGAGGTTGAAAGAGCTATCTGCGGAGTGCTGGCCTATAGCTGGCTGGAGTACTACTCTTCTGATCCTGATTCATCTAAAATATGGTCTGACTTCGAGAAGAAGCTTGTTGAATTTATTAAACACCAAATTGAGTCATCAGATTATGGAGAAGCATTCAGGAAAGCTAACAAAGTGGTTCATGAGTACGGTCTATGTACTCGTGCGATTGAATACATTGTACGATCAATGTATTTCAAAGTGGTGAAACAGCTCCAGTATACCAGCATTTCTGCCCCACCTGCCAGTCCGTGGAAGATGGGAGCCTATCAAAGGCATAACACTCGCCGGTACATAAAGGAAACAACAGTGCAAGGCTGGAAAATGAGCGTATACAAAGTGGCCAATGTTAGTGGCTGGGTTTCAAGTGGATCTCGTCGGGAGGAGGATAAGATCATCACAGATGTTGTAAATGAATTGCGTAAAAGAGTGGTTTGTGCTGGCTGCAACAGAAGGATTAATGAGACTTCATATTTGAGGTGCAAAGGTCGTGTTTGGCATCAAGAATGCTTCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like LIM NB-ARC UIM

Protein Analysis

471

Amino Acids

54.4

Weight (kDa)

8.23

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 249 - 352 3.1e-24 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021482)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0214001
rosa_samantha Rh7AG278600 Rh7CG297500 Rh7DG284100
rosa_wichuraiana Rw7G023960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1147
Acc36I ACCTGC 1 cut(s) 1147
AccB1I GGYRCC 1 cut(s) 531
AccB7I CCANNNNNTGG 1 cut(s) 1149
AccI GTMKAC 2 cut(s) 1118, 1230
AciI CCGC 2 cut(s) 882, 1411
AclWI GGATC 2 cut(s) 917, 1276
AcoI YGGCCR 2 cut(s) 526, 1239
AcsI RAATTY 3 cut(s) 608, 645, 971
AcuI CTGAAG 1 cut(s) 272
AfaI GTAC 7 cut(s) 240, 603, 911, 1046, 1057, 1080, 1190
AfeI AGCGCT 1 cut(s) 859
AfiI CCNNNNNNNGG 5 cut(s) 273, 425, 900, 1149, 1170
AgsI TTSAA 9 cut(s) 14, 393, 599, 850, 869, 971, 1070, 1096, 1263
Alw26I GTCTC 2 cut(s) 41, 1355
AlwI GGATC 2 cut(s) 917, 1276
Ama87I CYCGRG 1 cut(s) 242
Aor51HI AGCGCT 1 cut(s) 859
AoxI GGCC 5 cut(s) 87, 526, 766, 891, 1239
ApeKI GCWGC 3 cut(s) 74, 77, 1341
ApoI RAATTY 3 cut(s) 608, 645, 971
ArsI GACNNNNNNTTYG 6 cut(s) 104, 136, 630, 662, 1354, 1386
AseI ATTAAT 1 cut(s) 1356
AspA2I CCTAGG 1 cut(s) 773
AspLEI GCGC 1 cut(s) 860
AsuC2I CCSGG 2 cut(s) 383, 683
AsuHPI GGTGA 2 cut(s) 170, 1114
AvaI CYCGRG 1 cut(s) 242
AvrII CCTAGG 1 cut(s) 773
BaeGI GKGCMC 1 cut(s) 458
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BalI TGGCCA 1 cut(s) 1241
BanI GGYRCC 1 cut(s) 531
BauI CACGAG 1 cut(s) 1059
BbsI GAAGAC 1 cut(s) 308
BbvCI CCTCAGC 1 cut(s) 861
BbvI GCAGC 3 cut(s) 61, 89, 1328
BccI CCATC 4 cut(s) 30, 518, 707, 1150
BcgI CGANNNNNNTGC 2 cut(s) 1163, 1197
BclI TGATCA 1 cut(s) 810
BcnI CCSGG 2 cut(s) 383, 683
BcoDI GTCTC 2 cut(s) 41, 1355
BfaI CTAG 2 cut(s) 125, 774
BfmI CTRYAG 3 cut(s) 75, 653, 895
BfoI RGCGCY 1 cut(s) 861
BfuAI ACCTGC 1 cut(s) 1147
BglI GCCNNNNNGGC 1 cut(s) 86
BisI GCNGC 3 cut(s) 75, 78, 1342
BlnI CCTAGG 1 cut(s) 773
BlsI GCNGC 3 cut(s) 76, 79, 1343
BmcAI AGTACT 1 cut(s) 911
Bme1390I CCNGG 2 cut(s) 383, 683
BmeT110I CYCGRG 1 cut(s) 242
BmiI GGNNCC 3 cut(s) 157, 533, 1162
BmrFI CCNGG 2 cut(s) 383, 683
BmsI GCATC 2 cut(s) 338, 1405
BoxI GACNNNNGTC 1 cut(s) 579
BpiI GAAGAC 1 cut(s) 308
BplI GAGNNNNNCTC 2 cut(s) 899, 931
BpmI CTGGAG 2 cut(s) 926, 1097
Bpu10I CCTNAGC 1 cut(s) 861
BpuEI CTTGAG 1 cut(s) 786
BpuMI CCSGG 2 cut(s) 383, 683
BsaJI CCNNGG 2 cut(s) 773, 1148
Bsc4I CCNNNNNNNGG 5 cut(s) 273, 425, 900, 1149, 1170
Bse118I RCCGGY 2 cut(s) 528, 1185
Bse1I ACTGG 2 cut(s) 1114, 1143
BseDI CCNNGG 2 cut(s) 773, 1148
BseGI GGATG 1 cut(s) 415
BseLI CCNNNNNNNGG 5 cut(s) 273, 425, 900, 1149, 1170
BseMII CTCAG 2 cut(s) 393, 852
BseNI ACTGG 2 cut(s) 1114, 1143
BseRI GAGGAG 1 cut(s) 1295
BseSI GKGCMC 1 cut(s) 458
BseXI GCAGC 3 cut(s) 61, 89, 1328
BseYI CCCAGC 3 cut(s) 268, 306, 1254
BsgI GTGCAG 1 cut(s) 172
BshFI GGCC 5 cut(s) 89, 528, 768, 893, 1241
BshNI GGYRCC 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 4 cut(s) 383, 529, 682, 1186
BslFI GGGAC 2 cut(s) 441, 651
BslI CCNNNNNNNGG 5 cut(s) 273, 425, 900, 1149, 1170
BsmAI GTCTC 2 cut(s) 41, 1355
BsmBI CGTCTC 1 cut(s) 41
BsmFI GGGAC 2 cut(s) 441, 651
BsmI GAATGC 3 cut(s) 338, 1013, 1409
BsnI GGCC 5 cut(s) 89, 528, 768, 893, 1241
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 7 cut(s) 619, 697, 810, 922, 1082, 1268, 1290
BspACI CCGC 2 cut(s) 882, 1411
BspANI GGCC 5 cut(s) 89, 528, 768, 893, 1241
BspCNI CTCAG 2 cut(s) 394, 853
BspHI TCATGA 3 cut(s) 448, 687, 1039
BspLI GGNNCC 3 cut(s) 157, 533, 1162
BspMAI CTGCAG 2 cut(s) 79, 657
BspMI ACCTGC 1 cut(s) 1147
BspPI GGATC 2 cut(s) 917, 1276
BspT107I GGYRCC 1 cut(s) 531
BsrFI RCCGGY 2 cut(s) 528, 1185
BsrI ACTGG 2 cut(s) 1114, 1143
BssAI RCCGGY 2 cut(s) 528, 1185
BssECI CCNNGG 2 cut(s) 773, 1148
BssMI GATC 7 cut(s) 619, 697, 810, 922, 1082, 1268, 1290
BssNAI GTATAC 2 cut(s) 1119, 1231
BssSI CACGAG 1 cut(s) 1059
BssT1I CCWWGG 1 cut(s) 773
Bst1107I GTATAC 2 cut(s) 1119, 1231
Bst2BI CACGAG 1 cut(s) 1059
Bst4CI ACNGT 4 cut(s) 166, 221, 1049, 1207
Bst6I CTCTTC 1 cut(s) 922
BstC8I GCNNGC 4 cut(s) 530, 891, 902, 1339
BstDEI CTNAG 3 cut(s) 339, 402, 861
BstDSI CCRYGG 1 cut(s) 1148
BstENI CCTNNNNNAGG 1 cut(s) 1168
BstF5I GGATG 1 cut(s) 415
BstH2I RGCGCY 1 cut(s) 861
BstHHI GCGC 1 cut(s) 860
BstKTI GATC 7 cut(s) 622, 700, 813, 925, 1085, 1271, 1293
BstMAI GTCTC 2 cut(s) 41, 1355
BstMBI GATC 7 cut(s) 619, 697, 810, 922, 1082, 1268, 1290
BstMWI GCNNNNNNNGC 3 cut(s) 86, 357, 1139
BstNSI RCATGY 1 cut(s) 195
BstPAI GACNNNNGTC 1 cut(s) 579
BstSCI CCNGG 2 cut(s) 381, 681
BstSFI CTRYAG 3 cut(s) 75, 653, 895
BstSLI GKGCMC 1 cut(s) 458
BstV1I GCAGC 3 cut(s) 61, 89, 1328
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 1 cut(s) 1268
BstXI CCANNNNNNTGG 1 cut(s) 29
BstYI RGATCY 1 cut(s) 1268
BstZ17I GTATAC 2 cut(s) 1119, 1231
BsuRI GGCC 5 cut(s) 89, 528, 768, 893, 1241
BtgI CCRYGG 1 cut(s) 1148
BtgZI GCGATG 1 cut(s) 366
BtsCI GGATG 1 cut(s) 415
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 3 cut(s) 162, 184, 1212
BveI ACCTGC 1 cut(s) 1147
Cac8I GCNNGC 4 cut(s) 530, 891, 902, 1339
CciI TCATGA 3 cut(s) 448, 687, 1039
CfoI GCGC 1 cut(s) 860
Cfr10I RCCGGY 2 cut(s) 528, 1185
Csp6I GTAC 7 cut(s) 239, 602, 910, 1045, 1056, 1079, 1189
CspCI CAANNNNNGTGG 2 cut(s) 1231, 1266
CviAII CATG 9 cut(s) 26, 91, 192, 362, 449, 688, 819, 833, 1040
CviQI GTAC 7 cut(s) 239, 602, 910, 1045, 1056, 1079, 1189
DdeI CTNAG 3 cut(s) 339, 402, 861
DpnI GATC 7 cut(s) 621, 699, 812, 924, 1084, 1270, 1292
DpnII GATC 7 cut(s) 619, 697, 810, 922, 1082, 1268, 1290
EaeI YGGCCR 2 cut(s) 526, 1239
Eam1104I CTCTTC 1 cut(s) 922
EarI CTCTTC 1 cut(s) 922
Eco130I CCWWGG 1 cut(s) 773
Eco47III AGCGCT 1 cut(s) 859
Eco57I CTGAAG 1 cut(s) 272
Eco88I CYCGRG 1 cut(s) 242
EcoNI CCTNNNNNAGG 1 cut(s) 1168
EcoT14I CCWWGG 1 cut(s) 773
EcoT22I ATGCAT 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 773
Esp3I CGTCTC 1 cut(s) 41
FaeI CATG 9 cut(s) 29, 94, 195, 365, 452, 691, 822, 836, 1043
FaqI GGGAC 2 cut(s) 441, 651
FatI CATG 9 cut(s) 25, 90, 191, 361, 448, 687, 818, 832, 1039
FbaI TGATCA 1 cut(s) 810
FblI GTMKAC 2 cut(s) 1118, 1230
Fnu4HI GCNGC 3 cut(s) 75, 78, 1342
FokI GGATG 1 cut(s) 402
Fsp4HI GCNGC 3 cut(s) 75, 78, 1342
FspBI CTAG 2 cut(s) 125, 774
GlaI GCGC 1 cut(s) 859
GluI GCNGC 3 cut(s) 75, 78, 1342
GsaI CCCAGC 3 cut(s) 272, 310, 1258
GsuI CTGGAG 2 cut(s) 926, 1097
HaeII RGCGCY 1 cut(s) 861
HaeIII GGCC 5 cut(s) 89, 528, 768, 893, 1241
HapII CCGG 4 cut(s) 383, 529, 682, 1186
HhaI GCGC 1 cut(s) 860
Hin1II CATG 9 cut(s) 29, 94, 195, 365, 452, 691, 822, 836, 1043
Hin6I GCGC 1 cut(s) 858
HinP1I GCGC 1 cut(s) 858
HincII GTYRAC 1 cut(s) 783
HindII GTYRAC 1 cut(s) 783
HindIII AAGCTT 2 cut(s) 341, 962
HinfI GANTC 5 cut(s) 389, 554, 569, 929, 992
HpaI GTTAAC 1 cut(s) 783
HpaII CCGG 4 cut(s) 383, 529, 682, 1186
HphI GGTGA 2 cut(s) 170, 1114
Hpy166II GTNNAC 3 cut(s) 783, 1119, 1231
Hpy188I TCNGA 6 cut(s) 155, 574, 702, 922, 949, 1000
Hpy8I GTNNAC 3 cut(s) 783, 1119, 1231
Hpy99I CGWCG 2 cut(s) 155, 1278
HpyAV CCTTC 4 cut(s) 490, 685, 779, 1344
HpyCH4III ACNGT 4 cut(s) 166, 221, 1049, 1207
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 357, 1139
HpyF3I CTNAG 3 cut(s) 339, 402, 861
Hsp92II CATG 9 cut(s) 29, 94, 195, 365, 452, 691, 822, 836, 1043
HspAI GCGC 1 cut(s) 858
KroI GCCGGC 1 cut(s) 528
KroNI GCCGGC 1 cut(s) 530
Ksp22I TGATCA 1 cut(s) 810
KspAI GTTAAC 1 cut(s) 783
Kzo9I GATC 7 cut(s) 619, 697, 810, 922, 1082, 1268, 1290
LmnI GCTCC 3 cut(s) 269, 1116, 1160
Lsp1109I GCAGC 3 cut(s) 61, 89, 1328
LweI GCATC 2 cut(s) 338, 1405
MaeI CTAG 2 cut(s) 125, 774
MaeIII GTNAC 2 cut(s) 120, 176
MalI GATC 7 cut(s) 621, 699, 812, 924, 1084, 1270, 1292
MboI GATC 7 cut(s) 619, 697, 810, 922, 1082, 1268, 1290
MboII GAAGA 7 cut(s) 271, 278, 313, 629, 909, 970, 1165
MflI RGATCY 1 cut(s) 1268
MhlI GDGCHC 1 cut(s) 458
MlsI TGGCCA 1 cut(s) 1241
MluNI TGGCCA 1 cut(s) 1241
MlyI GAGTC 1 cut(s) 1001
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 9 cut(s) 54, 79, 445, 454, 746, 856, 1273, 1276, 1368
Mox20I TGGCCA 1 cut(s) 1241
Mph1103I ATGCAT 1 cut(s) 197
MroNI GCCGGC 1 cut(s) 528
MscI TGGCCA 1 cut(s) 1241
MseI TTAA 4 cut(s) 677, 782, 978, 1356
Msp20I TGGCCA 1 cut(s) 1241
MspA1I CMGCKG 1 cut(s) 1413
MspI CCGG 4 cut(s) 383, 529, 682, 1186
MspR9I CCNGG 2 cut(s) 383, 683
Mva1269I GAATGC 3 cut(s) 338, 1013, 1409
MwoI GCNNNNNNNGC 3 cut(s) 86, 357, 1139
NaeI GCCGGC 1 cut(s) 530
NciI CCSGG 2 cut(s) 383, 683
NdeII GATC 7 cut(s) 619, 697, 810, 922, 1082, 1268, 1290
NgoMIV GCCGGC 1 cut(s) 528
NlaIII CATG 9 cut(s) 29, 94, 195, 365, 452, 691, 822, 836, 1043
NlaIV GGNNCC 3 cut(s) 157, 533, 1162
NmuCI GTSAC 2 cut(s) 120, 176
NsiI ATGCAT 1 cut(s) 197
NspI RCATGY 1 cut(s) 195
PagI TCATGA 3 cut(s) 448, 687, 1039
PaqCI CACCTGC 1 cut(s) 1147
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PctI GAATGC 3 cut(s) 338, 1013, 1409
PdiI GCCGGC 1 cut(s) 530
PfeI GAWTC 4 cut(s) 389, 554, 569, 929
PflMI CCANNNNNTGG 1 cut(s) 1149
PkrI GCNGC 3 cut(s) 76, 79, 1343
PleI GAGTC 1 cut(s) 1000
PpsI GAGTC 1 cut(s) 1000
PshAI GACNNNNGTC 1 cut(s) 579
PshBI ATTAAT 1 cut(s) 1356
PspFI CCCAGC 3 cut(s) 268, 306, 1254
PspN4I GGNNCC 3 cut(s) 157, 533, 1162
PstI CTGCAG 2 cut(s) 79, 657
PsuI RGATCY 1 cut(s) 1268
RsaI GTAC 7 cut(s) 240, 603, 911, 1046, 1057, 1080, 1190
RsaNI GTAC 7 cut(s) 239, 602, 910, 1045, 1056, 1079, 1189
SaqAI TTAA 4 cut(s) 677, 782, 978, 1356
SatI GCNGC 3 cut(s) 75, 78, 1342
Sau3AI GATC 7 cut(s) 619, 697, 810, 922, 1082, 1268, 1290
ScaI AGTACT 1 cut(s) 911
SchI GAGTC 1 cut(s) 1001
ScrFI CCNGG 2 cut(s) 383, 683
SduI GDGCHC 1 cut(s) 458
SfaNI GCATC 2 cut(s) 338, 1405
SfcI CTRYAG 3 cut(s) 75, 653, 895
SmlI CTYRAG 1 cut(s) 801
SmoI CTYRAG 1 cut(s) 801
SsiI CCGC 2 cut(s) 882, 1411
SspMI CTAG 2 cut(s) 125, 774
StyD4I CCNGG 2 cut(s) 381, 681
StyI CCWWGG 1 cut(s) 773
TaaI ACNGT 4 cut(s) 166, 221, 1049, 1207
TaqI TCGA 6 cut(s) 141, 346, 463, 649, 738, 954
TatI WGTACW 3 cut(s) 601, 909, 1055
TfiI GAWTC 4 cut(s) 389, 554, 569, 929
Tru1I TTAA 4 cut(s) 677, 782, 978, 1356
Tru9I TTAA 4 cut(s) 677, 782, 978, 1356
TscAI CASTG 3 cut(s) 169, 191, 1212
TseFI GTSAC 2 cut(s) 120, 176
TseI GCWGC 3 cut(s) 74, 77, 1341
Tsp45I GTSAC 2 cut(s) 120, 176
TspGWI ACGGA 1 cut(s) 1137
TspRI CASTG 3 cut(s) 169, 191, 1212
Van91I CCANNNNNTGG 1 cut(s) 1149
VspI ATTAAT 1 cut(s) 1356
XagI CCTNNNNNAGG 1 cut(s) 1168
XapI RAATTY 3 cut(s) 608, 645, 971
XceI RCATGY 1 cut(s) 195
XmaJI CCTAGG 1 cut(s) 773
XmiI GTMKAC 2 cut(s) 1118, 1230
XspI CTAG 2 cut(s) 125, 774
ZrmI AGTACT 1 cut(s) 911
Zsp2I ATGCAT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.