Rh7BG205900

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014064
Physical Location & Seq
Forward (+)
17268566 .. 17274373
5808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG205900.1

Sequence Viewer

Length: 1758 bp
ATGGGCGTGGCCAAGTCGTGGAGGTTCAGCTTGACACCGGCGGCAGCGAAGCTGGCTCTGTTACAGCACCAGAACGGCTACAATGGCGGCGGCGGTGGTGCGGCCAAGCTGCAGAGCTTGAGATCGCCTAAAACGGCGCCGTTTTCGCAGCGGCAGCGGAAGCAGCAGCAGCCGCCGGCGACGAGGAGGTGGTCCGTAGTGTGTGGGCTGATGCTGTTTGGGCTGGGCCTCGTCTCGCTCTTCACTGGACACGTCGCCTCTGATCTCGAATGGTGGTACACTCAGCGGGTGGCCAATCACGGCTTGTACTTGAAGCTGACTGGGAATGGTCGAGAGGCGATTGATGTTTGGAAGTCGAAGTACTCGAAATTCTACTACGGTTGCAGTGAAAGAGGTCGGCATTATCCTCCGGCGAAAAAGGAGAAGGCATCGAATGGATATTTGCTGATTGCAACTAGTGGAGGGTTGAACCAGCAAAGAACAGGAATAACAGATGCAGTGATTGTGGCCCGAATTCTTAATGCTACCTTGGTTGTGCCTGAGCTGGATCATCATTCCTATTGGAAGGATGATAGTGACTTTGTAAATATTTTTGATGTCGAATGGTTCATGTCTTCTCTTGCGAAAGATGTGACAATTGTTCGAAGAGTTCCTGAAAAAGTCATGAGGAGCATGGATAAACCTCCATATACCATGCGTGTTCCGAGGAAATCTGAGCCTGAATACTATATTGATCAAGTTTTACCAATACTTTTGAGGAGACGTGTTCTGCAACTGACAAAGTTTGATTATAGACTTTCAAGTAACCTTGACGACGAGCTGCAAAAGTTGCGTTGTCGTGTTAATTATCATGCACTTAGATTTACAAAATCTATCAATGAGCTGGGTCAGAAACTTGTTATGAGAATGCGACAGATGGCAACACGTTTCGTTGCTGTTCACTTGAGGTTTGAACCTGATATGCTAGCATTTTCTGGGTGTTACTATGGTGGGGGTGATAAAGAGAGATACGAGCTTGCTGAAATAAGAAAACGATGGGCAACTTTACCTGATTTAAGCCCTCTTGATGAGCGAAAACGAGGAAAATGTCCGCTGACTCCTCATGAAGTTGGTCTAATGCTGCGTGCACTTGGTTTCACAAATGACACATACCTCTATGTTGCTTCTGGTGAAATATATGGGGGAGAAGAGACTCTAAGGCCTCTAAGAGAACTGTTCCCAAACTTTTACACAAAGGAGATGCTTGCTAATGAAGAGCTAAAACCTTTTCTTCCTTTCTCTTCTCGCCTCGCTGCAGTTGACTACATTGTCTCTGACGAAAGTGATGTGTTTGTCACTAATAATAATGGGAATATGGCCAAGATTCTCGCAGGTCGAAGGAGGTATATGGGTCATAAGAGGACAATCCGGCCAAATGCAAAGAGGCTCAGTGCTTTGTTCATGGCAAGGGATCAGATGGATTGGGATACATTTGCAAAAAAAGTAAAGTCATGCCAAAGAGGATTCATGGGTGAACCTGAGGATATGAAACTTGGACGAGGTGAATTTCATGAATTTCCATACGCTTGTATCTGCGAGAAACCATCAAGTAGTATTGAAAACAAAGATCATCACACACAAGTTGTAAAGGACTCGACACGGAAAACCAGAAATCCATATAACGTATATTCAAGGGAGAAGGCTCTACACGTATCTATGAAGAGGAACACGGGAAAATCTGAAAGAGATCATGAGAATGATGAAGTTTTCCCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

585

Amino Acids

67.3

Weight (kDa)

9.58

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 147 - 463 2.1e-103 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014064)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16650 AT4G16650
fragaria_vesca FvH4_5g19080 FvH4_5g19080 FvH4_5g19080
malus_domestica MD04G1062900.v1.1 MD06G1057200.v1.1
prunus_persica Prupe.5G068100_v2.0.a1
pyrus_communis pycom04g05660 pycom06g04800
rosa_chinensis RchiOBHm_Chr7g0203531
rosa_laevigata RLG00000003522
rosa_multiflora Rmu_ssc0000362.1_g000007
rosa_roxburghii Rroxscaffold_3G00253730
rosa_rugosa Rorug07G0076700
rosa_samantha Rh7BG205900
rosa_wichuraiana Rw7G018010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1307
Acc36I ACCTGC 1 cut(s) 1361
AccB1I GGYRCC 1 cut(s) 136
AccB7I CCANNNNNTGG 1 cut(s) 18
AclWI GGATC 2 cut(s) 555, 1458
AcoI YGGCCR 5 cut(s) 9, 102, 291, 1356, 1409
AcsI RAATTY 4 cut(s) 368, 513, 1544, 1553
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 3 cut(s) 278, 308, 362
AfiI CCNNNNNNNGG 1 cut(s) 18
AflIII ACRYGT 4 cut(s) 250, 763, 923, 1687
AgsI TTSAA 6 cut(s) 313, 469, 801, 953, 1598, 1671
AhlI ACTAGT 1 cut(s) 455
AjiI CACGTC 2 cut(s) 253, 764
Alw21I GWGCWC 1 cut(s) 1129
Alw26I GTCTC 4 cut(s) 238, 754, 1184, 1315
Alw44I GTGCAC 1 cut(s) 1125
AlwI GGATC 2 cut(s) 555, 1458
AoxI GGCC 8 cut(s) 9, 102, 226, 291, 507, 1199, 1356, 1409
ApaLI GTGCAC 1 cut(s) 1125
ApoI RAATTY 4 cut(s) 368, 513, 1544, 1553
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 3 cut(s) 192, 226, 508
AsuHPI GGTGA 4 cut(s) 1007, 1181, 1523, 1553
AsuII TTCGAA 1 cut(s) 643
AsuNHI GCTAGC 1 cut(s) 964
AvaII GGWCC 1 cut(s) 192
AxyI CCTNAGG 1 cut(s) 1518
BaeGI GKGCMC 1 cut(s) 1129
BaeI ACNNNNGTAYC 2 cut(s) 1552, 1585
BalI TGGCCA 3 cut(s) 11, 293, 1358
BanI GGYRCC 1 cut(s) 136
BarI GAAGNNNNNNTAC 2 cut(s) 344, 376
BbsI GAAGAC 1 cut(s) 606
Bbv12I GWGCWC 1 cut(s) 1129
BccI CCATC 4 cut(s) 910, 1029, 1450, 1591
BceAI ACGGC 4 cut(s) 91, 124, 150, 316
BciVI GTATCC 1 cut(s) 1459
BclI TGATCA 1 cut(s) 733
BcoDI GTCTC 4 cut(s) 238, 754, 1184, 1315
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 3 cut(s) 456, 965, 1756
BfmI CTRYAG 2 cut(s) 110, 1293
BfoI RGCGCY 1 cut(s) 140
BfuAI ACCTGC 1 cut(s) 1361
BfuI GTATCC 1 cut(s) 1459
BmcAI AGTACT 1 cut(s) 362
Bme18I GGWCC 1 cut(s) 192
BmgBI CACGTC 2 cut(s) 253, 764
BmgT120I GGNCC 3 cut(s) 192, 226, 508
BmiI GGNNCC 1 cut(s) 138
BmrI ACTGGG 1 cut(s) 330
BmsI GCATC 4 cut(s) 201, 437, 484, 1230
BmtI GCTAGC 1 cut(s) 968
BmuI ACTGGG 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 606
Bpu10I CCTNAGC 1 cut(s) 540
Bpu14I TTCGAA 1 cut(s) 643
BpuEI CTTGAG 2 cut(s) 139, 964
BsaAI YACGTR 1 cut(s) 1690
BsaHI GRCGYC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 528, 704
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse118I RCCGGY 2 cut(s) 37, 175
Bse1I ACTGG 2 cut(s) 250, 325
Bse21I CCTNAGG 1 cut(s) 1518
BseDI CCNNGG 2 cut(s) 528, 704
BseGI GGATG 1 cut(s) 574
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMII CTCAG 5 cut(s) 296, 531, 705, 1441, 1509
BseNI ACTGG 2 cut(s) 250, 325
BseRI GAGGAG 4 cut(s) 199, 682, 772, 1089
BseSI GKGCMC 1 cut(s) 1129
BseYI CCCAGC 2 cut(s) 223, 883
BshFI GGCC 8 cut(s) 11, 104, 228, 293, 509, 1201, 1358, 1411
BshNI GGYRCC 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 1129
BsiSI CCGG 4 cut(s) 38, 176, 410, 1408
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 4 cut(s) 238, 754, 1184, 1315
BsmBI CGTCTC 2 cut(s) 238, 754
BsmI GAATGC 1 cut(s) 912
BsnI GGCC 8 cut(s) 11, 104, 228, 293, 509, 1201, 1358, 1411
Bsp119I TTCGAA 1 cut(s) 643
Bsp1286I GDGCHC 1 cut(s) 1129
Bsp143I GATC 7 cut(s) 122, 262, 547, 733, 1450, 1606, 1726
BspANI GGCC 8 cut(s) 11, 104, 228, 293, 509, 1201, 1358, 1411
BspCNI CTCAG 5 cut(s) 295, 532, 706, 1440, 1510
BspHI TCATGA 4 cut(s) 663, 1102, 1549, 1729
BspLI GGNNCC 1 cut(s) 138
BspMAI CTGCAG 2 cut(s) 114, 1297
BspMI ACCTGC 1 cut(s) 1361
BspOI GCTAGC 1 cut(s) 968
BspPI GGATC 2 cut(s) 555, 1458
BspQI GCTCTTC 2 cut(s) 245, 1248
BspT104I TTCGAA 1 cut(s) 643
BspT107I GGYRCC 1 cut(s) 136
BsrFI RCCGGY 2 cut(s) 37, 175
BsrI ACTGG 2 cut(s) 250, 325
BssAI RCCGGY 2 cut(s) 37, 175
BssECI CCNNGG 2 cut(s) 528, 704
BssMI GATC 7 cut(s) 122, 262, 547, 733, 1450, 1606, 1726
BssNI GRCGYC 1 cut(s) 137
BssT1I CCWWGG 1 cut(s) 528
Bst4CI ACNGT 2 cut(s) 380, 1215
Bst6I CTCTTC 6 cut(s) 245, 640, 1182, 1248, 1285, 1694
BstACI GRCGYC 1 cut(s) 137
BstAPI GCANNNNNTGC 1 cut(s) 829
BstBAI YACGTR 1 cut(s) 1690
BstBI TTCGAA 1 cut(s) 643
BstC8I GCNNGC 6 cut(s) 54, 177, 966, 1017, 1125, 1245
BstDEI CTNAG 8 cut(s) 282, 540, 714, 857, 1196, 1205, 1427, 1518
BstF5I GGATG 1 cut(s) 574
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 7 cut(s) 125, 265, 550, 736, 1453, 1609, 1729
BstMAI GTCTC 4 cut(s) 238, 754, 1184, 1315
BstMBI GATC 7 cut(s) 122, 262, 547, 733, 1450, 1606, 1726
BstSFI CTRYAG 2 cut(s) 110, 1293
BstSLI GKGCMC 1 cut(s) 1129
BstV2I GAAGAC 1 cut(s) 606
Bsu36I CCTNAGG 1 cut(s) 1518
BsuI GTATCC 1 cut(s) 1459
BsuRI GGCC 8 cut(s) 11, 104, 228, 293, 509, 1201, 1358, 1411
BtrI CACGTC 2 cut(s) 253, 764
BtsCI GGATG 1 cut(s) 574
BtsI GCAGTG 2 cut(s) 391, 504
BtsIMutI CAGTG 4 cut(s) 243, 391, 504, 1435
BveI ACCTGC 1 cut(s) 1361
Cac8I GCNNGC 6 cut(s) 54, 177, 966, 1017, 1125, 1245
CciI TCATGA 4 cut(s) 663, 1102, 1549, 1729
CfoI GCGC 1 cut(s) 139
Cfr10I RCCGGY 2 cut(s) 37, 175
Cfr13I GGNCC 3 cut(s) 192, 226, 508
Csp6I GTAC 3 cut(s) 277, 307, 361
CviQI GTAC 3 cut(s) 277, 307, 361
DdeI CTNAG 8 cut(s) 282, 540, 714, 857, 1196, 1205, 1427, 1518
DinI GGCGCC 1 cut(s) 138
DpnI GATC 7 cut(s) 124, 264, 549, 735, 1452, 1608, 1728
DpnII GATC 7 cut(s) 122, 262, 547, 733, 1450, 1606, 1726
DrdI GACNNNNNNGTC 1 cut(s) 1307
DseDI GACNNNNNNGTC 1 cut(s) 1307
EaeI YGGCCR 5 cut(s) 9, 102, 291, 1356, 1409
Eam1104I CTCTTC 6 cut(s) 245, 640, 1182, 1248, 1285, 1694
EarI CTCTTC 6 cut(s) 245, 640, 1182, 1248, 1285, 1694
Eco130I CCWWGG 1 cut(s) 528
Eco147I AGGCCT 1 cut(s) 1201
Eco47I GGWCC 1 cut(s) 192
Eco81I CCTNAGG 1 cut(s) 1518
EcoRI GAATTC 1 cut(s) 513
EcoT14I CCWWGG 1 cut(s) 528
EgeI GGCGCC 1 cut(s) 138
EheI GGCGCC 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 528
Esp3I CGTCTC 2 cut(s) 238, 754
FauI CCCGC 1 cut(s) 279
FbaI TGATCA 1 cut(s) 733
FokI GGATG 1 cut(s) 581
FspBI CTAG 3 cut(s) 456, 965, 1756
GlaI GCGC 1 cut(s) 138
GsaI CCCAGC 2 cut(s) 227, 887
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 8 cut(s) 11, 104, 228, 293, 509, 1201, 1358, 1411
HapII CCGG 4 cut(s) 38, 176, 410, 1408
HhaI GCGC 1 cut(s) 139
Hin1I GRCGYC 1 cut(s) 137
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HincII GTYRAC 1 cut(s) 1300
HindII GTYRAC 1 cut(s) 1300
HinfI GANTC 5 cut(s) 1096, 1192, 1363, 1503, 1631
HpaII CCGG 4 cut(s) 38, 176, 410, 1408
HphI GGTGA 4 cut(s) 1007, 1181, 1523, 1553
Hpy166II GTNNAC 5 cut(s) 279, 940, 1127, 1300, 1514
Hpy188I TCNGA 7 cut(s) 262, 705, 715, 891, 1315, 1455, 1720
Hpy188III TCNNGA 8 cut(s) 266, 332, 653, 664, 1064, 1103, 1550, 1730
Hpy8I GTNNAC 5 cut(s) 279, 940, 1127, 1300, 1514
Hpy99I CGWCG 3 cut(s) 184, 257, 818
HpyAV CCTTC 4 cut(s) 418, 559, 1371, 1672
HpyCH4III ACNGT 2 cut(s) 380, 1215
HpyCH4IV ACGT 5 cut(s) 252, 763, 925, 1662, 1689
HpyF3I CTNAG 8 cut(s) 282, 540, 714, 857, 1196, 1205, 1427, 1518
HpySE526I ACGT 5 cut(s) 252, 763, 925, 1662, 1689
Hsp92I GRCGYC 1 cut(s) 137
HspAI GCGC 1 cut(s) 137
KasI GGCGCC 1 cut(s) 136
KroI GCCGGC 1 cut(s) 175
KroNI GCCGGC 1 cut(s) 177
Ksp22I TGATCA 1 cut(s) 733
Kzo9I GATC 7 cut(s) 122, 262, 547, 733, 1450, 1606, 1726
LguI GCTCTTC 2 cut(s) 245, 1248
LmnI GCTCC 1 cut(s) 669
LweI GCATC 4 cut(s) 201, 437, 484, 1230
MaeI CTAG 3 cut(s) 456, 965, 1756
MaeII ACGT 5 cut(s) 252, 763, 925, 1662, 1689
MaeIII GTNAC 6 cut(s) 60, 575, 631, 803, 980, 1333
MalI GATC 7 cut(s) 124, 264, 549, 735, 1452, 1608, 1728
MboI GATC 7 cut(s) 122, 262, 547, 733, 1450, 1606, 1726
MboII GAAGA 8 cut(s) 232, 606, 657, 1199, 1262, 1265, 1272, 1711
MfeI CAATTG 1 cut(s) 636
MhlI GDGCHC 1 cut(s) 1129
MlsI TGGCCA 3 cut(s) 11, 293, 1358
MluCI AATT 6 cut(s) 368, 513, 636, 844, 1544, 1553
MluNI TGGCCA 3 cut(s) 11, 293, 1358
Mly113I GGCGCC 1 cut(s) 137
MlyI GAGTC 3 cut(s) 1090, 1186, 1625
Mox20I TGGCCA 3 cut(s) 11, 293, 1358
MreI CGCCGGCG 1 cut(s) 175
MroNI GCCGGC 1 cut(s) 175
MscI TGGCCA 3 cut(s) 11, 293, 1358
MseI TTAA 3 cut(s) 519, 843, 1055
MslI CAYNNNNRTG 1 cut(s) 1734
Msp20I TGGCCA 3 cut(s) 11, 293, 1358
MspA1I CMGCKG 4 cut(s) 151, 157, 286, 1093
MspI CCGG 4 cut(s) 38, 176, 410, 1408
MunI CAATTG 1 cut(s) 636
Mva1269I GAATGC 1 cut(s) 912
NaeI GCCGGC 1 cut(s) 177
NarI GGCGCC 1 cut(s) 137
NdeII GATC 7 cut(s) 122, 262, 547, 733, 1450, 1606, 1726
NgoMIV GCCGGC 1 cut(s) 175
NheI GCTAGC 1 cut(s) 964
NlaIV GGNNCC 1 cut(s) 138
NmuCI GTSAC 3 cut(s) 575, 631, 1333
NspV TTCGAA 1 cut(s) 643
PagI TCATGA 4 cut(s) 663, 1102, 1549, 1729
PceI AGGCCT 1 cut(s) 1201
PciSI GCTCTTC 2 cut(s) 245, 1248
PcsI WCGNNNNNNNCGW 1 cut(s) 362
PctI GAATGC 1 cut(s) 912
PdiI GCCGGC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 1363, 1503
PflMI CCANNNNNTGG 1 cut(s) 18
PleI GAGTC 3 cut(s) 1090, 1186, 1625
PluTI GGCGCC 1 cut(s) 140
PpsI GAGTC 3 cut(s) 1090, 1186, 1625
Ppu21I YACGTR 1 cut(s) 1690
PspFI CCCAGC 2 cut(s) 223, 883
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 3 cut(s) 192, 226, 508
PstI CTGCAG 2 cut(s) 114, 1297
RsaI GTAC 3 cut(s) 278, 308, 362
RsaNI GTAC 3 cut(s) 277, 307, 361
RseI CAYNNNNRTG 1 cut(s) 1734
SapI GCTCTTC 2 cut(s) 245, 1248
SaqAI TTAA 3 cut(s) 519, 843, 1055
Sau3AI GATC 7 cut(s) 122, 262, 547, 733, 1450, 1606, 1726
Sau96I GGNCC 3 cut(s) 192, 226, 508
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 3 cut(s) 1090, 1186, 1625
SduI GDGCHC 1 cut(s) 1129
SfaNI GCATC 4 cut(s) 201, 437, 484, 1230
SfcI CTRYAG 2 cut(s) 110, 1293
SfoI GGCGCC 1 cut(s) 138
SfuI TTCGAA 1 cut(s) 643
SgrAI CRCCGGYG 2 cut(s) 37, 175
SinI GGWCC 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 1734
SmlI CTYRAG 2 cut(s) 118, 943
SmoI CTYRAG 2 cut(s) 118, 943
SpeI ACTAGT 1 cut(s) 455
Sse9I AATT 6 cut(s) 368, 513, 636, 844, 1544, 1553
SseBI AGGCCT 1 cut(s) 1201
SspDI GGCGCC 1 cut(s) 136
SspI AATATT 1 cut(s) 589
SspMI CTAG 3 cut(s) 456, 965, 1756
StuI AGGCCT 1 cut(s) 1201
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 2 cut(s) 380, 1215
TaiI ACGT 5 cut(s) 255, 766, 928, 1665, 1692
TaqI TCGA 9 cut(s) 267, 331, 356, 365, 431, 600, 643, 1375, 1634
TasI AATT 6 cut(s) 368, 513, 636, 844, 1544, 1553
TatI WGTACW 2 cut(s) 306, 360
TauI GCSGC 6 cut(s) 44, 90, 93, 104, 154, 175
TfiI GAWTC 2 cut(s) 1363, 1503
Tru1I TTAA 3 cut(s) 519, 843, 1055
Tru9I TTAA 3 cut(s) 519, 843, 1055
TscAI CASTG 4 cut(s) 250, 391, 504, 1435
TseFI GTSAC 3 cut(s) 575, 631, 1333
Tsp45I GTSAC 3 cut(s) 575, 631, 1333
TspGWI ACGGA 2 cut(s) 184, 1654
TspRI CASTG 4 cut(s) 250, 391, 504, 1435
Van91I CCANNNNNTGG 1 cut(s) 18
VneI GTGCAC 1 cut(s) 1125
VpaK11BI GGWCC 1 cut(s) 192
XapI RAATTY 4 cut(s) 368, 513, 1544, 1553
XspI CTAG 3 cut(s) 456, 965, 1756
ZrmI AGTACT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.