Rh7CG402500

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0019437
Physical Location & Seq
Forward (+)
51425942 .. 51426370
429 bp
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UTR
Exon/CDS
Intron
Rh7CG402500.1

Sequence Viewer

Length: 429 bp
ATGGATTTGCTTCGCTTGAATTTCATAATTGTAGAAATGAGGCTTCCCAGCGGTGAACCTCGACAAAATTTTGAAGATCAATATCGAATCCAGTCAGCTACAAAGCTTCATCTTGCTGGAGTAAATTCAAGTTTAGCAAGGAACTTCTTAGATATCAAAATTTTCGATGGAGTGCTTGAAATTCTAGAGCTAAAATTAGACGATCTTTCTATCGAGCTATGGCTGAAATTCATTGTACTTGAACAATGCTCCTATCATTCCTCAAGACACATAACAACATATGCTGCATTCATGAGTTGCCTAGTCTGCACGCCTAAGGACGTAGAGCTTCTCAACCATAATAGTGTTATTAAGAACTATTCATCCTATAAAGGGATTGGAAATACTATTACAAACATTGGCAAATATGTCGCTATTAATTTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

142

Amino Acids

16.29

Weight (kDa)

6.07

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 19 - 139 8.6e-23 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019437)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0226281
rosa_rugosa Rorug05G0228300
rosa_samantha Rh7AG383000 Rh7AG383100 Rh7CG402500 Rh7CG402600 Rh7DG381300 Rh7DG381400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 51
AcsI RAATTY 6 cut(s) 19, 67, 124, 159, 180, 227
AfaI GTAC 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 372
AgsI TTSAA 5 cut(s) 19, 74, 129, 179, 242
AloI GAACNNNNNNTCC 2 cut(s) 347, 379
AluBI AGCT 5 cut(s) 98, 106, 190, 217, 328
AluI AGCT 5 cut(s) 98, 106, 190, 217, 328
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 6 cut(s) 19, 67, 124, 159, 180, 227
AseI ATTAAT 1 cut(s) 417
AsuHPI GGTGA 1 cut(s) 65
AxyI CCTNAGG 1 cut(s) 315
BbvI GCAGC 1 cut(s) 271
BccI CCATC 1 cut(s) 161
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BfaI CTAG 2 cut(s) 185, 302
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
BpmI CTGGAG 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 247
BsaBI GATNNNNATC 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 372
Bse1I ACTGG 1 cut(s) 91
Bse21I CCTNAGG 1 cut(s) 315
Bse8I GATNNNNATC 1 cut(s) 81
BseGI GGATG 1 cut(s) 362
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 372
BseNI ACTGG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 271
BseYI CCCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 372
BsmI GAATGC 1 cut(s) 287
Bsp143I GATC 2 cut(s) 76, 202
BspACI CCGC 1 cut(s) 51
BspHI TCATGA 1 cut(s) 291
BsrI ACTGG 1 cut(s) 91
BssMI GATC 2 cut(s) 76, 202
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 2 cut(s) 148, 315
BstF5I GGATG 1 cut(s) 362
BstKTI GATC 2 cut(s) 79, 205
BstMBI GATC 2 cut(s) 76, 202
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 271
Bsu36I CCTNAGG 1 cut(s) 315
BtsCI GGATG 1 cut(s) 362
Cac8I GCNNGC 1 cut(s) 311
CciI TCATGA 1 cut(s) 291
Csp6I GTAC 1 cut(s) 236
CviAII CATG 1 cut(s) 292
CviJI RGCY 7 cut(s) 43, 98, 106, 190, 217, 223, 328
CviKI_1 RGCY 7 cut(s) 43, 98, 106, 190, 217, 223, 328
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 2 cut(s) 148, 315
DpnI GATC 2 cut(s) 78, 204
DpnII GATC 2 cut(s) 76, 202
Eco32I GATATC 1 cut(s) 154
Eco81I CCTNAGG 1 cut(s) 315
EcoRV GATATC 1 cut(s) 154
FaeI CATG 1 cut(s) 295
FaiI YATR 9 cut(s) 26, 220, 272, 280, 282, 293, 339, 369, 408
FatI CATG 1 cut(s) 291
FauNDI CATATG 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 349
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 2 cut(s) 185, 302
GluI GCNGC 1 cut(s) 285
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 138
Hin1II CATG 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 1 cut(s) 87
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 56
Hpy188III TCNNGA 3 cut(s) 185, 264, 292
Hpy8I GTNNAC 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 2 cut(s) 287, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
HpyF3I CTNAG 2 cut(s) 148, 315
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 1 cut(s) 295
Kzo9I GATC 2 cut(s) 76, 202
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 3 cut(s) 61, 102, 104
Lsp1109I GCAGC 1 cut(s) 271
MaeI CTAG 2 cut(s) 185, 302
MaeII ACGT 1 cut(s) 321
MalI GATC 2 cut(s) 78, 204
MboI GATC 2 cut(s) 76, 202
MboII GAAGA 1 cut(s) 86
MluCI AATT 9 cut(s) 19, 27, 67, 124, 159, 180, 194, 227, 418
MnlI CCTC 3 cut(s) 33, 69, 271
MseI TTAA 2 cut(s) 351, 417
MslI CAYNNNNRTG 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 306
NdeI CATATG 1 cut(s) 280
NdeII GATC 2 cut(s) 76, 202
NlaIII CATG 1 cut(s) 295
PagI TCATGA 1 cut(s) 291
PctI GAATGC 1 cut(s) 287
PfeI GAWTC 1 cut(s) 87
PkrI GCNGC 1 cut(s) 286
PshBI ATTAAT 1 cut(s) 417
PspFI CCCAGC 1 cut(s) 47
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 2 cut(s) 351, 417
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 2 cut(s) 76, 202
SetI ASST 7 cut(s) 61, 100, 108, 192, 219, 324, 330
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
Sse9I AATT 9 cut(s) 19, 27, 67, 124, 159, 180, 194, 227, 418
SsiI CCGC 1 cut(s) 51
SspMI CTAG 2 cut(s) 185, 302
TaiI ACGT 1 cut(s) 324
TaqI TCGA 4 cut(s) 61, 85, 165, 213
TasI AATT 9 cut(s) 19, 27, 67, 124, 159, 180, 194, 227, 418
TatI WGTACW 1 cut(s) 235
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 2 cut(s) 351, 417
Tru9I TTAA 2 cut(s) 351, 417
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 5 cut(s) 13, 98, 220, 280, 351
VspI ATTAAT 1 cut(s) 417
XapI RAATTY 6 cut(s) 19, 67, 124, 159, 180, 227
XbaI TCTAGA 1 cut(s) 184
XspI CTAG 2 cut(s) 185, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.