Rh7DG381300

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0019437
Physical Location & Seq
Forward (+)
51832724 .. 51833152
429 bp
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UTR
Exon/CDS
Intron
Rh7DG381300.1

Sequence Viewer

Length: 429 bp
ATGGATTTGCTTCGCTTGAATTTCATAATTGTAGAAATGAGGCTTCCCAGCGGTGAACCTCGACAAAATTTTGAAGTTCAATATCAGATCCAGTCAGCTACTAAGCTTCATCTTGCTGGAGTAAATTCAAGTTTAGCAAGGAACTTCTTAGATATCAAAATTTTCGATGGAGTGCTTGAAATCCTAGAGCTAAAATTAGACGATCTTTCTATCGAGCTATGGCTGAAATTCATTGTACTTGAACAATGCTCCTATCATTCCTCAAGACACATAACAACATATGCTGCATTTATGAGTTGCCTAGTCTGCACGCCTAAGGACGTAGAGCTTCTCTACCATAATAGTGTTATTAAGAACTATTCATCCTATAACGGGATTGGAAATACTATTACAAACATTGGCAAATATGTCGCTATTCATTTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

142

Amino Acids

16.3

Weight (kDa)

5.93

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 20 - 139 6e-22 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019437)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0226281
rosa_rugosa Rorug05G0228300
rosa_samantha Rh7AG383000 Rh7AG383100 Rh7CG402500 Rh7CG402600 Rh7DG381300 Rh7DG381400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 51
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 5 cut(s) 19, 67, 124, 159, 227
AfaI GTAC 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 372
AgsI TTSAA 6 cut(s) 19, 74, 80, 129, 179, 242
AloI GAACNNNNNNTCC 2 cut(s) 347, 379
AluBI AGCT 5 cut(s) 98, 106, 190, 217, 328
AluI AGCT 5 cut(s) 98, 106, 190, 217, 328
AlwI GGATC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 5 cut(s) 19, 67, 124, 159, 227
AsuHPI GGTGA 1 cut(s) 65
AxyI CCTNAGG 1 cut(s) 315
BbvI GCAGC 1 cut(s) 271
BccI CCATC 1 cut(s) 161
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BfaI CTAG 2 cut(s) 185, 302
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
BpmI CTGGAG 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 247
Bsc4I CCNNNNNNNGG 1 cut(s) 372
Bse1I ACTGG 1 cut(s) 91
Bse21I CCTNAGG 1 cut(s) 315
BseGI GGATG 1 cut(s) 362
BseLI CCNNNNNNNGG 1 cut(s) 372
BseNI ACTGG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 271
BseYI CCCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 372
Bsp143I GATC 2 cut(s) 87, 202
BspACI CCGC 1 cut(s) 51
BspPI GGATC 1 cut(s) 82
BsrI ACTGG 1 cut(s) 91
BssMI GATC 2 cut(s) 87, 202
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 3 cut(s) 102, 148, 315
BstF5I GGATG 1 cut(s) 362
BstKTI GATC 2 cut(s) 90, 205
BstMBI GATC 2 cut(s) 87, 202
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
Bsu36I CCTNAGG 1 cut(s) 315
BtsCI GGATG 1 cut(s) 362
Cac8I GCNNGC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 236
CviJI RGCY 7 cut(s) 43, 98, 106, 190, 217, 223, 328
CviKI_1 RGCY 7 cut(s) 43, 98, 106, 190, 217, 223, 328
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 3 cut(s) 102, 148, 315
DpnI GATC 2 cut(s) 89, 204
DpnII GATC 2 cut(s) 87, 202
Eco32I GATATC 1 cut(s) 154
Eco81I CCTNAGG 1 cut(s) 315
EcoRV GATATC 1 cut(s) 154
FaiI YATR 9 cut(s) 26, 220, 272, 280, 282, 293, 339, 369, 408
FauNDI CATATG 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 349
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 2 cut(s) 185, 302
GluI GCNGC 1 cut(s) 285
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 138
HindIII AAGCTT 1 cut(s) 104
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 264
Hpy8I GTNNAC 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 2 cut(s) 287, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
HpyF3I CTNAG 3 cut(s) 102, 148, 315
HpySE526I ACGT 1 cut(s) 321
Kzo9I GATC 2 cut(s) 87, 202
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 3 cut(s) 61, 102, 104
Lsp1109I GCAGC 1 cut(s) 271
MaeI CTAG 2 cut(s) 185, 302
MaeII ACGT 1 cut(s) 321
MalI GATC 2 cut(s) 89, 204
MboI GATC 2 cut(s) 87, 202
MflI RGATCY 1 cut(s) 87
MluCI AATT 7 cut(s) 19, 27, 67, 124, 159, 194, 227
MnlI CCTC 3 cut(s) 33, 69, 271
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 306
NdeI CATATG 1 cut(s) 280
NdeII GATC 2 cut(s) 87, 202
PkrI GCNGC 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 47
PsuI RGATCY 1 cut(s) 87
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 2 cut(s) 87, 202
SetI ASST 7 cut(s) 61, 100, 108, 192, 219, 324, 330
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
Sse9I AATT 7 cut(s) 19, 27, 67, 124, 159, 194, 227
SsiI CCGC 1 cut(s) 51
SspMI CTAG 2 cut(s) 185, 302
TaiI ACGT 1 cut(s) 324
TaqI TCGA 3 cut(s) 61, 165, 213
TasI AATT 7 cut(s) 19, 27, 67, 124, 159, 194, 227
TatI WGTACW 1 cut(s) 235
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 5 cut(s) 13, 98, 220, 351, 407
XapI RAATTY 5 cut(s) 19, 67, 124, 159, 227
XspI CTAG 2 cut(s) 185, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.