Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0012569

Physical Location & Seq

Genomic Coordinates Forward (+)

54399689 .. 54411300

Gene Structure 11612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG421300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGATAAGGGAAAGTTTCTATTAGTAGCACGGAGATACATGCATGGGTCACACACTGAGTACATAATATCACTTGATGCTGATGGCATATCTCAAGGAAGCAATGCTTATGTGGGAAAATTAAGCTTGGATATCTGCATTGATTTGCTAATGGTCAAGATATTGGCCGTTTCTTCAAGTGGAAACCGAATCAAGATATTGGGAAATGCTAATGGTCTTGACTTGCTGAAACGATGTGGGAATGATTCTATTGACGCCTCTGGAGTTGAATCTGAAACTTCAAGAAAGTTTATCAATGCAGAGATTAAAGAACAAGATGTCAAATATGTAGGGTCTGGCTTGTCACCACCTGAATTGGTTCAACATGCAATTGAATGTCTACCTGTATCCTTAGATAAGGAATTAAATGGTTCAAACTCTTCTTTCCGTTATTGGACACTATTAGATTATTCAAGTGCCTACAAGTTTGGAGAAATAACACCTAGATTGGTTGCAGAGCGTCTTATAGCTGCCATCCATGAATCCTCTAATCCACCATTTAAGATGTCATTCTTTATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005886 GO:0006066 GO:0006576 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009308 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0016811 GO:0031090 GO:0034308 GO:0034641 GO:0042439 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044106 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0047412 GO:0050896 GO:0051704 GO:0051707 GO:0070291 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amidase FPP

Protein Analysis

187

Amino Acids

20.58

Weight (kDa)

6.08

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tub	PF01167	2 - 44	2.8e-08	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25540 FvH4_1g25540 FvH4_1g25540 FvH4_1g25540
malus_domestica	MD15G1139000.v1.1
prunus_persica	Prupe.4G282000_v2.0.a1 Prupe.4G282000_v2.0.a1
pyrus_communis	pycom15g12560
rosa_chinensis	RchiOBHm_Chr2g0123671
rosa_laevigata	RLG00000018768
rosa_multiflora	Rmu_sc0004915.1_g000003
rosa_roxburghii	Rroxscaffold_2G00120450
rosa_rugosa	Rorug02G0247300
rosa_samantha	Rh2AG306300 Rh2BG314500 Rh2CG292700 Rh2DG330000 Rh7CG421300
rosa_wichuraiana	Rw2G024560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	379
AcoI	YGGCCR	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	62
AgsI	TTSAA	7 cut(s)	177, 269, 282, 362, 374, 414, 453
AluBI	AGCT	2 cut(s)	126, 509
AluI	AGCT	2 cut(s)	126, 509
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	509
AseI	ATTAAT	1 cut(s)	558
Asp700I	GAANNNNTTC	1 cut(s)	357
AsuHPI	GGTGA	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	496
BccI	CCATC	2 cut(s)	77, 521
BceAI	ACGGC	1 cut(s)	152
BciVI	GTATCC	1 cut(s)	397
BfaI	CTAG	1 cut(s)	483
BfuI	GTATCC	1 cut(s)	397
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
BmsI	GCATC	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	513
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	496
BshFI	GGCC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	167
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	109
BssNI	GRCGYC	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	424
BstACI	GRCGYC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	57, 391
BstF5I	GGATG	1 cut(s)	513
BstNSI	RCATGY	2 cut(s)	43, 368
BstV1I	GCAGC	1 cut(s)	496
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	513
BtsIMutI	CAGTG	1 cut(s)	54
CseI	GACGC	2 cut(s)	263, 488
Csp6I	GTAC	1 cut(s)	61
CspCI	CAANNNNNGTGG	2 cut(s)	336, 371
CviAII	CATG	4 cut(s)	40, 44, 365, 518
CviJI	RGCY	4 cut(s)	126, 167, 339, 509
CviKI_1	RGCY	4 cut(s)	126, 167, 339, 509
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	2 cut(s)	57, 391
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	424
Eco32I	GATATC	1 cut(s)	133
EcoRV	GATATC	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	45
FaeI	CATG	4 cut(s)	43, 47, 368, 521
FaiI	YATR	9 cut(s)	41, 45, 65, 89, 111, 327, 366, 506, 519
FalI	AAGNNNNNCTT	2 cut(s)	91, 123
FatI	CATG	4 cut(s)	39, 43, 364, 517
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	1 cut(s)	483
GluI	GCNGC	1 cut(s)	510
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	167
HgaI	GACGC	2 cut(s)	263, 488
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	4 cut(s)	43, 47, 368, 521
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	4 cut(s)	189, 245, 269, 521
HphI	GGTGA	1 cut(s)	336
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	5 cut(s)	157, 193, 218, 261, 282
Hpy8I	GTNNAC	1 cut(s)	380
HpyCH4V	TGCA	5 cut(s)	43, 138, 299, 368, 494
HpyF3I	CTNAG	2 cut(s)	57, 391
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	4 cut(s)	43, 47, 368, 521
LpnPI	CCDG	4 cut(s)	246, 321, 363, 396
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	483
MaeIII	GTNAC	2 cut(s)	48, 342
MboII	GAAGA	2 cut(s)	165, 411
MfeI	CAATTG	1 cut(s)	369
MluCI	AATT	5 cut(s)	119, 353, 369, 401, 559
MnlI	CCTC	2 cut(s)	268, 535
Mph1103I	ATGCAT	1 cut(s)	45
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	6 cut(s)	122, 306, 404, 540, 558, 562
MunI	CAATTG	1 cut(s)	369
NlaIII	CATG	4 cut(s)	43, 47, 368, 521
NmuCI	GTSAC	2 cut(s)	48, 342
NsiI	ATGCAT	1 cut(s)	45
NspI	RCATGY	2 cut(s)	43, 368
PacI	TTAATTAA	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	4 cut(s)	189, 245, 269, 521
PkrI	GCNGC	1 cut(s)	511
PshBI	ATTAAT	1 cut(s)	558
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	6 cut(s)	122, 306, 404, 540, 558, 562
SatI	GCNGC	1 cut(s)	510
SetI	ASST	5 cut(s)	128, 352, 385, 484, 511
SfaNI	GCATC	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
Sse9I	AATT	5 cut(s)	119, 353, 369, 401, 559
SspMI	CTAG	1 cut(s)	483
TasI	AATT	5 cut(s)	119, 353, 369, 401, 559
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	4 cut(s)	189, 245, 269, 521
Tru1I	TTAA	6 cut(s)	122, 306, 404, 540, 558, 562
Tru9I	TTAA	6 cut(s)	122, 306, 404, 540, 558, 562
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	2 cut(s)	48, 342
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	2 cut(s)	48, 342
TspDTI	ATGAA	1 cut(s)	534
TspGWI	ACGGA	2 cut(s)	46, 416
TspRI	CASTG	1 cut(s)	61
VspI	ATTAAT	1 cut(s)	558
XceI	RCATGY	2 cut(s)	43, 368
XmiI	GTMKAC	1 cut(s)	379
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.