Rw0G014620

MO25-like protein At5g47540

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00653
OG0020559
Physical Location & Seq
Reverse (-)
12022 .. 13243
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G014620.1

Sequence Viewer

Length: 315 bp
ATGGAATCAGACCACATGAAGAAGTTCTTTGATTATATACAACTTCCAAATTTTGAAATAGCATCGGATGCTGCAGCCACTTTCAAGGAGCTTATGACAAGGCATAAGTCAACAGTTGCACAATTTTTGTCTAATAATTATGACTGGTTTTTCCAAGAATATAATTCGCAGTTGCTGGAGTCTCAGAATTACATCACCAAACGACAGGCTATCAAGATTGGATTGTGGAATTTTTGTGATGTACTACATGAAGAAACCTTCGAAAGAGGAGGGGATTCAGAAGACAATCAGCAAGAAAAATATTTTGCAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04150 ko04152 map04150 map04152
Pfam Domains
Protein Families
Mo25

Protein Analysis

104

Amino Acids

12.42

Weight (kDa)

4.8

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mo25 PF08569 2 - 73 3.2e-29 Mo25-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020559)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0047351
rosa_roxburghii Rroxscaffold_3G00262450
rosa_samantha Rh5BG323600 Rh5DG334600
rosa_wichuraiana Rw0G014620 Rw2G019020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 49, 229
AfaI GTAC 1 cut(s) 243
AgsI TTSAA 2 cut(s) 56, 85
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 186
AlwNI CAGNNNCTG 1 cut(s) 175
ApeKI GCWGC 2 cut(s) 71, 74
ApoI RAATTY 2 cut(s) 49, 229
Asp700I GAANNNNTTC 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 187
AsuII TTCGAA 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 288
BbvI GCAGC 2 cut(s) 58, 86
BcoDI GTCTC 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 2 cut(s) 72, 75
BlsI GCNGC 2 cut(s) 73, 76
BmsI GCATC 2 cut(s) 58, 71
BpiI GAAGAC 1 cut(s) 288
BpmI CTGGAG 1 cut(s) 197
Bpu14I TTCGAA 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 282
BseXI GCAGC 2 cut(s) 58, 86
BsmAI GTCTC 1 cut(s) 186
Bsp119I TTCGAA 1 cut(s) 261
BspCNI CTCAG 1 cut(s) 196
BspMAI CTGCAG 1 cut(s) 76
BspT104I TTCGAA 1 cut(s) 261
BsrI ACTGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 115
BstAPI GCANNNNNTGC 1 cut(s) 68
BstBI TTCGAA 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 186
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 58, 86
BstV2I GAAGAC 1 cut(s) 288
BtsCI GGATG 1 cut(s) 73
CaiI CAGNNNCTG 1 cut(s) 175
Csp6I GTAC 1 cut(s) 242
CviAII CATG 2 cut(s) 16, 248
CviJI RGCY 3 cut(s) 77, 91, 209
CviKI_1 RGCY 3 cut(s) 77, 91, 209
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 1 cut(s) 183
FaeI CATG 2 cut(s) 19, 251
FaiI YATR 9 cut(s) 17, 36, 38, 95, 105, 141, 162, 249, 313
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FatI CATG 2 cut(s) 15, 247
Fnu4HI GCNGC 2 cut(s) 72, 75
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 2 cut(s) 72, 75
GluI GCNGC 2 cut(s) 72, 75
GsuI CTGGAG 1 cut(s) 197
Hin1II CATG 2 cut(s) 19, 251
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HinfI GANTC 3 cut(s) 5, 179, 275
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 4 cut(s) 10, 67, 186, 280
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 1 cut(s) 111
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 3 cut(s) 74, 119, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 2 cut(s) 19, 251
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 3 cut(s) 130, 161, 191
Lsp1109I GCAGC 2 cut(s) 58, 86
LweI GCATC 2 cut(s) 58, 71
MboII GAAGA 3 cut(s) 31, 263, 293
MluCI AATT 6 cut(s) 49, 122, 136, 163, 187, 229
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 2 cut(s) 260, 263
MroXI GAANNNNTTC 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 68
NlaIII CATG 2 cut(s) 19, 251
NspV TTCGAA 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 5, 275
PkrI GCNGC 2 cut(s) 73, 76
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PstI CTGCAG 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 175
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
SatI GCNGC 2 cut(s) 72, 75
SchI GAGTC 1 cut(s) 188
SetI ASST 2 cut(s) 93, 260
SfaNI GCATC 2 cut(s) 58, 71
SfcI CTRYAG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 261
Sse9I AATT 6 cut(s) 49, 122, 136, 163, 187, 229
SspI AATATT 1 cut(s) 302
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 261
TasI AATT 6 cut(s) 49, 122, 136, 163, 187, 229
TatI WGTACW 1 cut(s) 241
TfiI GAWTC 2 cut(s) 5, 275
TseI GCWGC 2 cut(s) 71, 74
TspDTI ATGAA 2 cut(s) 32, 264
XapI RAATTY 2 cut(s) 49, 229
XmnI GAANNNNTTC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.