Rw2G019020

MO25-like protein At5g47540

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0020559
Physical Location & Seq
Reverse (-)
24937418 .. 24939961
2544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G019020.1

Sequence Viewer

Length: 339 bp
ATGGAATCAGACCACATGAAGAAGTTCTTTGATTATATACAACTTCCAAATTTTGAAATAGCATCGGATGCTGCAGCCACTTTCAAGGAGCTTATGACAAGGCATAAGTCAACAGTTGCACAATTTTTGTCTAATAATTATGACTGGTTTTTCCAAGAATATAATTCGCAGTTGCTGGAGTCTCAGAATTACATCACCAAACGACAGGCTATCAAGGTAAGTATACATAGTTTTTTGTGCCCCCGAGAGTCTTGTTTATGTCATCCAATTTTCTGTAATATATTCATTGCTGAGATTTATTTTGCTAAAAGAACAGGAATAGTTGTTCTGTTACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04150 ko04152 map04150 map04152
Pfam Domains
Protein Families
Mo25

Protein Analysis

112

Amino Acids

13.22

Weight (kDa)

6.95

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mo25 PF08569 2 - 73 5.6e-30 Mo25-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020559)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0047351
rosa_roxburghii Rroxscaffold_3G00262450
rosa_samantha Rh5BG323600 Rh5DG334600
rosa_wichuraiana Rw0G014620 Rw2G019020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 223
AcsI RAATTY 1 cut(s) 49
AgsI TTSAA 2 cut(s) 56, 85
AloI GAACNNNNNNTCC 1 cut(s) 309
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 186
AlwNI CAGNNNCTG 1 cut(s) 175
Ama87I CYCGRG 1 cut(s) 243
ApeKI GCWGC 2 cut(s) 71, 74
ApoI RAATTY 1 cut(s) 49
Asp700I GAANNNNTTC 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 243
BaeGI GKGCMC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 58, 86
BcoDI GTCTC 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 2 cut(s) 72, 75
BlsI GCNGC 2 cut(s) 73, 76
BmeT110I CYCGRG 1 cut(s) 243
BmsI GCATC 2 cut(s) 58, 71
BpmI CTGGAG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 285
BseGI GGATG 2 cut(s) 73, 262
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 2 cut(s) 197, 282
BseNI ACTGG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 2 cut(s) 58, 86
BsiHKCI CYCGRG 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 242
BspCNI CTCAG 2 cut(s) 196, 283
BspMAI CTGCAG 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 285
BsrI ACTGG 1 cut(s) 149
BssNAI GTATAC 1 cut(s) 224
Bst1107I GTATAC 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 115
BstAPI GCANNNNNTGC 1 cut(s) 68
BstDEI CTNAG 2 cut(s) 183, 291
BstF5I GGATG 2 cut(s) 73, 262
BstMAI GTCTC 1 cut(s) 186
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 242
BstV1I GCAGC 2 cut(s) 58, 86
BstZ17I GTATAC 1 cut(s) 224
BtsCI GGATG 2 cut(s) 73, 262
BtsIMutI CAGTG 1 cut(s) 334
CaiI CAGNNNCTG 1 cut(s) 175
CviAII CATG 1 cut(s) 16
CviJI RGCY 3 cut(s) 77, 91, 209
CviKI_1 RGCY 3 cut(s) 77, 91, 209
DdeI CTNAG 2 cut(s) 183, 291
Eco88I CYCGRG 1 cut(s) 243
FaeI CATG 1 cut(s) 19
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FatI CATG 1 cut(s) 15
FblI GTMKAC 1 cut(s) 223
Fnu4HI GCNGC 2 cut(s) 72, 75
FokI GGATG 2 cut(s) 80, 249
Fsp4HI GCNGC 2 cut(s) 72, 75
GluI GCNGC 2 cut(s) 72, 75
GsuI CTGGAG 1 cut(s) 197
Hin1II CATG 1 cut(s) 19
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HinfI GANTC 3 cut(s) 5, 179, 248
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 111, 224
Hpy188I TCNGA 3 cut(s) 10, 67, 186
Hpy8I GTNNAC 2 cut(s) 111, 224
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 2 cut(s) 74, 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 2 cut(s) 183, 291
Hsp92II CATG 1 cut(s) 19
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 4 cut(s) 130, 161, 191, 300
Lsp1109I GCAGC 2 cut(s) 58, 86
LweI GCATC 2 cut(s) 58, 71
MaeIII GTNAC 1 cut(s) 330
MboII GAAGA 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 6 cut(s) 49, 122, 136, 163, 187, 267
MlyI GAGTC 2 cut(s) 188, 257
MroXI GAANNNNTTC 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 68
NlaIII CATG 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 2 cut(s) 73, 76
PleI GAGTC 2 cut(s) 187, 256
PpsI GAGTC 2 cut(s) 187, 256
PstI CTGCAG 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 175
SatI GCNGC 2 cut(s) 72, 75
SchI GAGTC 2 cut(s) 188, 257
SduI GDGCHC 1 cut(s) 242
SetI ASST 2 cut(s) 93, 219
SfaNI GCATC 2 cut(s) 58, 71
SfcI CTRYAG 1 cut(s) 72
Sse9I AATT 6 cut(s) 49, 122, 136, 163, 187, 267
TaaI ACNGT 1 cut(s) 115
TasI AATT 6 cut(s) 49, 122, 136, 163, 187, 267
TfiI GAWTC 1 cut(s) 5
TseI GCWGC 2 cut(s) 71, 74
TspDTI ATGAA 2 cut(s) 32, 274
XapI RAATTY 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.