Rw2G006330

mitogen-activated protein kinase kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
6099671 .. 6102986
3316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G006330.1

Sequence Viewer

Length: 1074 bp
ATGAAGACGAAGACGCCATTGAATCTGAAGAAGCAGCTCAAGCTCTCTGTTCCTGCTCAAGAAACCAACATCACCTCATTCTTGACTGCCAGCGGCACATTTCATGATGGGGGTTTGCTTCTGAACCAGAAAGGGTTGCGGCTTATCTCCGAAGAAAAGGAGGTCCGACCTTCTGATAGCAAGGAACTCAATGTTGAATTTTCCTTGGAAGATCTCGAGACTATCAAAGTGATTGGAAAGGGAAGTGGTGGTGTAGTTCAACTTGTTCGCCATAAATGGGTTGGAAAACTATTTGCCTTGAAGGTTATTCAGATGAACATACAAGAGGAAATTCGTAAACAGATTGTGCAGGAGCTAAAAATAAACCAAGCAGCACAATGTCCACATGTGGTAGTTTGCCACCACTCCTTTTATCACAATGGAGCAATTTCTCTTGTGTTAGAATACATGGATCGTGGATCTCTTGCAGATGTGATCAGACAAGTTAAGACAATTCTTGAACCATATCTTGCAGTCGTTTGTAAACAGGTTTTACAAGGTCTTGTCTACTTGCACAATGAAAGGCATGTAATACATAGAGACATAAAACCATCCAATCTGCTAGTAAACCACAAGGGGGAGGTCAAGATTACTGATTTTGGTGTGAGTGCTTCACTTGCTAGCTCCATGGGTCAGAGGGACACATTTGTTGGTACTTACAATTATATGTCGCCAGAGAGAATTAAAGGGGGTACTTATGACTACAGCAGTGATATTTGGAGTTTAGGCATGGTGATACTTGAGTGTGCTATTGGACGGTTTCCTTACATGCAATCTGAAGATGAACAAAGCTGGCCAAGCTTTTATGAGCTTTTGGAGGCAATTGTTGGAAGTCCACCACCTACTGCTCCATCGGATCAGTTCTCTCCCGAGTTCTGTTCTTTTGTGTCTGCCTGCATACAGAAAGACCCTCAACACAGATCATCATCTTTGGATCTTTTGAGTCACCCATTCATCAAAAAGTTTGAAGACAAGGACATTGATCTTGAGATTCTGGTGGGTAGCTTGGAATCCCCTGTAAATTTTCCCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000165 GO:0000187 GO:0000280 GO:0000910 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004708 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007049 GO:0007112 GO:0007140 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0007346 GO:0008150 GO:0008152 GO:0009524 GO:0009653 GO:0009791 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010200 GO:0010243 GO:0010311 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022622 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0033206 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045859 GO:0045860 GO:0045937 GO:0048232 GO:0048285 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048583 GO:0048584 GO:0048609 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051301 GO:0051321 GO:0051338 GO:0051347 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0061640 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140013 GO:0140096 GO:1901564 GO:1901698 GO:1901700 GO:1902531 GO:1902533 GO:1903046 GO:1905392 GO:1905393
Pfam Domains
Protein Families

Protein Analysis

357

Amino Acids

40.08

Weight (kDa)

6.32

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 73 - 332 1.5e-66 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 73 - 325 2e-37 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012782)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 546
AciI CCGC 2 cut(s) 93, 139
AclWI GGATC 4 cut(s) 459, 466, 903, 981
AcoI YGGCCR 1 cut(s) 833
AcsI RAATTY 3 cut(s) 197, 330, 1060
AcuI CTGAAG 2 cut(s) 47, 837
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 2 cut(s) 694, 733
AfiI CCNNNNNNNGG 2 cut(s) 277, 616
AflIII ACRYGT 1 cut(s) 385
AgsI TTSAA 6 cut(s) 22, 197, 260, 301, 500, 1007
AluBI AGCT 8 cut(s) 37, 43, 355, 663, 831, 840, 850, 1044
AluI AGCT 8 cut(s) 37, 43, 355, 663, 831, 840, 850, 1044
Alw26I GTCTC 2 cut(s) 212, 573
AlwI GGATC 4 cut(s) 459, 466, 903, 981
Ama87I CYCGRG 2 cut(s) 215, 908
AoxI GGCC 1 cut(s) 833
ApeKI GCWGC 2 cut(s) 34, 371
ApoI RAATTY 3 cut(s) 197, 330, 1060
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 3 cut(s) 64, 784, 977
AsuNHI GCTAGC 1 cut(s) 659
AvaI CYCGRG 2 cut(s) 215, 908
AvaII GGWCC 1 cut(s) 163
BaeI ACNNNNGTAYC 2 cut(s) 767, 800
BalI TGGCCA 1 cut(s) 835
BbsI GAAGAC 3 cut(s) 11, 17, 1014
BbvI GCAGC 2 cut(s) 46, 383
BccI CCATC 3 cut(s) 101, 598, 898
BclI TGATCA 1 cut(s) 474
BcoDI GTCTC 2 cut(s) 212, 573
BfaI CTAG 2 cut(s) 602, 660
BfmI CTRYAG 1 cut(s) 742
BglII AGATCT 1 cut(s) 211
BisI GCNGC 4 cut(s) 35, 94, 140, 372
BlsI GCNGC 4 cut(s) 36, 95, 141, 373
Bme18I GGWCC 1 cut(s) 163
BmeT110I CYCGRG 2 cut(s) 215, 908
BmgT120I GGNCC 1 cut(s) 163
BmtI GCTAGC 1 cut(s) 663
BpiI GAAGAC 3 cut(s) 11, 17, 1014
BpuEI CTTGAG 4 cut(s) 23, 42, 800, 1046
BsaBI GATNNNNATC 1 cut(s) 964
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 204, 666
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 616
Bse8I GATNNNNATC 1 cut(s) 964
BseDI CCNNGG 2 cut(s) 204, 666
BseGI GGATG 1 cut(s) 590
BseJI GATNNNNATC 1 cut(s) 964
BseLI CCNNNNNNNGG 2 cut(s) 277, 616
BseXI GCAGC 2 cut(s) 46, 383
BsgI GTGCAG 1 cut(s) 368
BshFI GGCC 1 cut(s) 835
BsiHKCI CYCGRG 2 cut(s) 215, 908
BslFI GGGAC 1 cut(s) 692
BslI CCNNNNNNNGG 2 cut(s) 277, 616
BsmAI GTCTC 2 cut(s) 212, 573
BsmFI GGGAC 1 cut(s) 692
BsnI GGCC 1 cut(s) 835
BsoBI CYCGRG 2 cut(s) 215, 908
Bsp143I GATC 8 cut(s) 211, 451, 458, 474, 895, 959, 973, 1021
Bsp19I CCATGG 1 cut(s) 666
BspACI CCGC 2 cut(s) 93, 139
BspANI GGCC 1 cut(s) 835
BspHI TCATGA 1 cut(s) 103
BspOI GCTAGC 1 cut(s) 663
BspPI GGATC 4 cut(s) 459, 466, 903, 981
BssECI CCNNGG 2 cut(s) 204, 666
BssMI GATC 8 cut(s) 211, 451, 458, 474, 895, 959, 973, 1021
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 2 cut(s) 204, 666
Bst4CI ACNGT 1 cut(s) 798
BstACI GRCGYC 1 cut(s) 14
BstC8I GCNNGC 4 cut(s) 91, 661, 833, 934
BstDSI CCRYGG 1 cut(s) 666
BstF5I GGATG 1 cut(s) 590
BstKTI GATC 8 cut(s) 214, 454, 461, 477, 898, 962, 976, 1024
BstMAI GTCTC 2 cut(s) 212, 573
BstMBI GATC 8 cut(s) 211, 451, 458, 474, 895, 959, 973, 1021
BstMWI GCNNNNNNNGC 3 cut(s) 40, 656, 837
BstNSI RCATGY 3 cut(s) 389, 569, 811
BstSFI CTRYAG 1 cut(s) 742
BstV1I GCAGC 2 cut(s) 46, 383
BstV2I GAAGAC 3 cut(s) 11, 17, 1014
BstX2I RGATCY 3 cut(s) 211, 458, 973
BstYI RGATCY 3 cut(s) 211, 458, 973
BsuRI GGCC 1 cut(s) 835
BtgI CCRYGG 1 cut(s) 666
BtsCI GGATG 1 cut(s) 590
BtsI GCAGTG 1 cut(s) 754
BtsIMutI CAGTG 1 cut(s) 754
Cac8I GCNNGC 4 cut(s) 91, 661, 833, 934
CciI TCATGA 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 163
CseI GACGC 1 cut(s) 22
Csp6I GTAC 2 cut(s) 693, 732
CviAII CATG 7 cut(s) 104, 386, 448, 566, 667, 769, 808
CviQI GTAC 2 cut(s) 693, 732
DpnI GATC 8 cut(s) 213, 453, 460, 476, 897, 961, 975, 1023
DpnII GATC 8 cut(s) 211, 451, 458, 474, 895, 959, 973, 1021
EaeI YGGCCR 1 cut(s) 833
Eco130I CCWWGG 2 cut(s) 204, 666
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 2 cut(s) 47, 837
Eco88I CYCGRG 2 cut(s) 215, 908
EcoT14I CCWWGG 2 cut(s) 204, 666
ErhI CCWWGG 2 cut(s) 204, 666
FaeI CATG 7 cut(s) 107, 389, 451, 569, 670, 772, 811
FaqI GGGAC 1 cut(s) 692
FatI CATG 7 cut(s) 103, 385, 447, 565, 666, 768, 807
FbaI TGATCA 1 cut(s) 474
FblI GTMKAC 1 cut(s) 546
Fnu4HI GCNGC 4 cut(s) 35, 94, 140, 372
FokI GGATG 1 cut(s) 577
Fsp4HI GCNGC 4 cut(s) 35, 94, 140, 372
FspBI CTAG 2 cut(s) 602, 660
GluI GCNGC 4 cut(s) 35, 94, 140, 372
HaeIII GGCC 1 cut(s) 835
HgaI GACGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 7 cut(s) 107, 389, 451, 569, 670, 772, 811
HindIII AAGCTT 1 cut(s) 838
HinfI GANTC 4 cut(s) 22, 982, 1030, 1049
HphI GGTGA 3 cut(s) 64, 784, 977
Hpy166II GTNNAC 6 cut(s) 338, 383, 524, 547, 607, 875
Hpy188III TCNNGA 9 cut(s) 59, 82, 104, 215, 217, 497, 625, 908, 1025
Hpy8I GTNNAC 6 cut(s) 338, 383, 524, 547, 607, 875
HpyAV CCTTC 2 cut(s) 180, 295
HpyCH4III ACNGT 1 cut(s) 798
HpyCH4V TGCA 6 cut(s) 349, 467, 512, 553, 811, 936
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 656, 837
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 7 cut(s) 107, 389, 451, 569, 670, 772, 811
Ksp22I TGATCA 1 cut(s) 474
Kzo9I GATC 8 cut(s) 211, 451, 458, 474, 895, 959, 973, 1021
LmnI GCTCC 4 cut(s) 352, 422, 668, 892
Lsp1109I GCAGC 2 cut(s) 46, 383
MaeI CTAG 2 cut(s) 602, 660
MaeIII GTNAC 1 cut(s) 983
MalI GATC 8 cut(s) 213, 453, 460, 476, 897, 961, 975, 1023
MboI GATC 8 cut(s) 211, 451, 458, 474, 895, 959, 973, 1021
MboII GAAGA 7 cut(s) 16, 22, 40, 164, 221, 830, 1019
MfeI CAATTG 1 cut(s) 861
MflI RGATCY 3 cut(s) 211, 458, 973
MlsI TGGCCA 1 cut(s) 835
MluCI AATT 8 cut(s) 197, 330, 426, 492, 700, 720, 861, 1060
MluNI TGGCCA 1 cut(s) 835
MlyI GAGTC 1 cut(s) 991
MmeI TCCRAC 3 cut(s) 190, 262, 847
MnlI CCTC 7 cut(s) 85, 154, 319, 613, 669, 850, 960
Mox20I TGGCCA 1 cut(s) 835
MscI TGGCCA 1 cut(s) 835
MseI TTAA 2 cut(s) 486, 723
Msp20I TGGCCA 1 cut(s) 835
MspA1I CMGCKG 1 cut(s) 93
MunI CAATTG 1 cut(s) 861
MwoI GCNNNNNNNGC 3 cut(s) 40, 656, 837
NcoI CCATGG 1 cut(s) 666
NdeII GATC 8 cut(s) 211, 451, 458, 474, 895, 959, 973, 1021
NheI GCTAGC 1 cut(s) 659
NlaIII CATG 7 cut(s) 107, 389, 451, 569, 670, 772, 811
NmuCI GTSAC 1 cut(s) 983
NspI RCATGY 3 cut(s) 389, 569, 811
PaeR7I CTCGAG 1 cut(s) 215
PagI TCATGA 1 cut(s) 103
PciI ACATGT 1 cut(s) 385
PfeI GAWTC 3 cut(s) 22, 1030, 1049
PkrI GCNGC 4 cut(s) 36, 95, 141, 373
PleI GAGTC 1 cut(s) 990
PpsI GAGTC 1 cut(s) 990
PscI ACATGT 1 cut(s) 385
PspPI GGNCC 1 cut(s) 163
PsuI RGATCY 3 cut(s) 211, 458, 973
RsaI GTAC 2 cut(s) 694, 733
RsaNI GTAC 2 cut(s) 693, 732
SaqAI TTAA 2 cut(s) 486, 723
SatI GCNGC 4 cut(s) 35, 94, 140, 372
Sau3AI GATC 8 cut(s) 211, 451, 458, 474, 895, 959, 973, 1021
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 1 cut(s) 991
SfcI CTRYAG 1 cut(s) 742
Sfr274I CTCGAG 1 cut(s) 215
SinI GGWCC 1 cut(s) 163
SlaI CTCGAG 1 cut(s) 215
SmlI CTYRAG 5 cut(s) 38, 57, 215, 779, 1025
SmoI CTYRAG 5 cut(s) 38, 57, 215, 779, 1025
Sse9I AATT 8 cut(s) 197, 330, 426, 492, 700, 720, 861, 1060
SsiI CCGC 2 cut(s) 93, 139
SspMI CTAG 2 cut(s) 602, 660
StyI CCWWGG 2 cut(s) 204, 666
TaaI ACNGT 1 cut(s) 798
TaqI TCGA 1 cut(s) 216
TasI AATT 8 cut(s) 197, 330, 426, 492, 700, 720, 861, 1060
TauI GCSGC 2 cut(s) 96, 142
TfiI GAWTC 3 cut(s) 22, 1030, 1049
Tru1I TTAA 2 cut(s) 486, 723
Tru9I TTAA 2 cut(s) 486, 723
TscAI CASTG 1 cut(s) 754
TseFI GTSAC 1 cut(s) 983
TseI GCWGC 2 cut(s) 34, 371
Tsp45I GTSAC 1 cut(s) 983
TspDTI ATGAA 6 cut(s) 17, 92, 329, 573, 837, 982
TspRI CASTG 1 cut(s) 754
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 3 cut(s) 197, 330, 1060
XceI RCATGY 3 cut(s) 389, 569, 811
XcmI CCANNNNNNNNNTGG 1 cut(s) 278
XhoI CTCGAG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 546
XspI CTAG 2 cut(s) 602, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.