Rorug02G0023300

mitogen-activated protein kinase kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011135
Physical Location & Seq
Forward (+)
1851506 .. 1852514
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0023300.1

Sequence Viewer

Length: 282 bp
ATGGGGGATCCTGAGGAGACGCCTGAGGAGATGGCATCCGACTTTACATGTGCAGAGTTTGAGACACCTCAATCCGTCCTCATAGGAGCCAGGCATATGGCTGCTCTTGAGATAAGTTGTGAGCCACGTGTGAGAAATTATGTTCGAAGCAAGTACTTGGATATTCTTGAGTTATCAACACGTCCAAAAACACCTGATGGAAACGAAATAGATTATATTTTTCAAAGAATTAAAGCCGCTGCGCGCACAATGGTTGCTTGTCCAGAAGGCCGAAGAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000165 GO:0000187 GO:0000280 GO:0000910 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004708 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007049 GO:0007112 GO:0007140 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0007346 GO:0008150 GO:0008152 GO:0009524 GO:0009653 GO:0009791 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010200 GO:0010243 GO:0010311 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022622 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0033206 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045859 GO:0045860 GO:0045937 GO:0048232 GO:0048285 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048583 GO:0048584 GO:0048609 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051301 GO:0051321 GO:0051338 GO:0051347 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0061640 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140013 GO:0140096 GO:1901564 GO:1901698 GO:1901700 GO:1902531 GO:1902533 GO:1903046 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
ko01521 ko01522 ko04010 ko04012 ko04013 ko04014 ko04015 ko04022 ko04024 ko04062 ko04066 ko04068 ko04071 ko04072 ko04114 ko04140 ko04150 ko04151 ko04210 ko04218 ko04270 ko04320 ko04370 ko04371 ko04380 ko04510 ko04540 ko04550 ko04620 ko04626 ko04650 ko04660 ko04662 ko04664 ko04666 ko04668 ko04720 ko04722 ko04725 ko04726 ko04730 ko04810 ko04910 ko04912 ko04914 ko04915 ko04916 ko04917 ko04919 ko04921 ko04926 ko04934 ko05020 ko05034 ko05161 ko05164 ko05165 ko05167 ko05200 ko05205 ko05206 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 ko05230 ko05231 map01521 map01522 map04010 map04012 map04013 map04014 map04015 map04022 map04024 map04062 map04066 map04068 map04071 map04072 map04114 map04140 map04150 map04151 map04210 map04218 map04270 map04320 map04370 map04371 map04380 map04510 map04540 map04550 map04620 map04626 map04650 map04660 map04662 map04664 map04666 map04668 map04720 map04722 map04725 map04726 map04730 map04810 map04910 map04912 map04914 map04915 map04916 map04917 map04919 map04921 map04926 map04934 map05020 map05034 map05161 map05164 map05165 map05167 map05200 map05205 map05206 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226 map05230 map05231
Pfam Domains
Protein Families
Pkinase

Protein Analysis

93

Amino Acids

10.48

Weight (kDa)

4.97

Isoelectric Point (pI)

60.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34910
fragaria_vesca FvH4_5g29390 FvH4_5g29390
malus_domestica MD02G1190200.v1.1
prunus_persica Prupe.6G216200_v2.0.a1
pyrus_communis pycom02g15430 pycom15g26400
rosa_chinensis RchiOBHm_Chr7g0222281
rosa_laevigata RLG00000002079 RLG00000016281
rosa_multiflora Rmu_sc0013580.1_g000001
rosa_roxburghii Rroxscaffold_3G00237230
rosa_rugosa Rorug02G0023300 Rorug02G0023400 Rorug07G0206900
rosa_samantha Rh7AG348700 Rh7BG338700 Rh7CG366200 Rh7DG345700
rosa_wichuraiana Rw7G029490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 244
AciI CCGC 1 cut(s) 237
AclWI GGATC 2 cut(s) 2, 15
AcvI CACGTG 1 cut(s) 128
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 1 cut(s) 155
AflIII ACRYGT 3 cut(s) 47, 127, 179
AgsI TTSAA 1 cut(s) 224
AjiI CACGTC 1 cut(s) 182
AjnI CCWGG 1 cut(s) 89
Alw26I GTCTC 2 cut(s) 11, 56
AlwI GGATC 2 cut(s) 2, 15
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 2 cut(s) 101, 239
AspLEI GCGC 2 cut(s) 244, 246
AsuII TTCGAA 1 cut(s) 145
AxyI CCTNAGG 2 cut(s) 12, 24
BamHI GGATCC 1 cut(s) 7
BbrPI CACGTG 1 cut(s) 128
BbvI GCAGC 2 cut(s) 88, 226
BccI CCATC 2 cut(s) 25, 191
BciT130I CCWGG 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 11, 56
BisI GCNGC 3 cut(s) 102, 237, 240
BlsI GCNGC 3 cut(s) 103, 238, 241
BmcAI AGTACT 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 91
BmgBI CACGTC 1 cut(s) 182
BmiI GGNNCC 2 cut(s) 9, 88
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 44
Bpu14I TTCGAA 1 cut(s) 145
BpuEI CTTGAG 2 cut(s) 128, 188
BsaAI YACGTR 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 20
Bse21I CCTNAGG 2 cut(s) 12, 24
BseBI CCWGG 1 cut(s) 91
BseGI GGATG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 15
BsePI GCGCGC 1 cut(s) 242
BseRI GAGGAG 2 cut(s) 29, 41
BseXI GCAGC 2 cut(s) 88, 226
BsgI GTGCAG 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 1 cut(s) 270
BsmAI GTCTC 2 cut(s) 11, 56
BsmBI CGTCTC 1 cut(s) 11
BsnI GGCC 1 cut(s) 270
Bsp119I TTCGAA 1 cut(s) 145
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 1 cut(s) 237
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 2 cut(s) 4, 16
BspFNI CGCG 1 cut(s) 244
BspLI GGNNCC 2 cut(s) 9, 88
BspPI GGATC 2 cut(s) 2, 15
BspT104I TTCGAA 1 cut(s) 145
BssHII GCGCGC 1 cut(s) 242
BssMI GATC 1 cut(s) 7
BssNI GRCGYC 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 268
BstACI GRCGYC 1 cut(s) 20
BstBAI YACGTR 1 cut(s) 128
BstBI TTCGAA 1 cut(s) 145
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 12, 24
BstF5I GGATG 1 cut(s) 35
BstFNI CGCG 1 cut(s) 244
BstHHI GCGC 2 cut(s) 244, 246
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 2 cut(s) 11, 56
BstMBI GATC 1 cut(s) 7
BstNI CCWGG 1 cut(s) 91
BstNSI RCATGY 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 89
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 88, 226
BstX2I RGATCY 1 cut(s) 7
BstXI CCANNNNNNTGG 1 cut(s) 97
BstYI RGATCY 1 cut(s) 7
Bsu36I CCTNAGG 2 cut(s) 12, 24
BsuRI GGCC 1 cut(s) 270
BtrI CACGTC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 244
CfoI GCGC 2 cut(s) 244, 246
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 48
CviJI RGCY 5 cut(s) 89, 101, 124, 236, 270
CviKI_1 RGCY 5 cut(s) 89, 101, 124, 236, 270
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 2 cut(s) 12, 24
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco72I CACGTG 1 cut(s) 128
Eco81I CCTNAGG 2 cut(s) 12, 24
EcoRII CCWGG 1 cut(s) 89
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 1 cut(s) 51
FaiI YATR 6 cut(s) 49, 83, 96, 98, 141, 216
FatI CATG 1 cut(s) 47
FauNDI CATATG 1 cut(s) 96
Fnu4HI GCNGC 3 cut(s) 102, 237, 240
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 3 cut(s) 102, 237, 240
GlaI GCGC 2 cut(s) 243, 245
GluI GCNGC 3 cut(s) 102, 237, 240
HaeIII GGCC 1 cut(s) 270
HgaI GACGC 1 cut(s) 28
HhaI GCGC 2 cut(s) 244, 246
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 1 cut(s) 51
Hin6I GCGC 2 cut(s) 242, 244
HinP1I GCGC 2 cut(s) 242, 244
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 4 cut(s) 11, 107, 167, 263
HpyAV CCTTC 1 cut(s) 260
HpyCH4IV ACGT 2 cut(s) 127, 181
HpyCH4V TGCA 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 12, 24
HpySE526I ACGT 2 cut(s) 127, 181
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 1 cut(s) 51
HspAI GCGC 2 cut(s) 242, 244
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 6 cut(s) 24, 36, 76, 103, 207, 276
Lsp1109I GCAGC 2 cut(s) 88, 226
LweI GCATC 1 cut(s) 44
MaeII ACGT 2 cut(s) 127, 181
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MflI RGATCY 1 cut(s) 7
MluCI AATT 2 cut(s) 136, 228
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 5 cut(s) 7, 19, 78, 89, 269
MseI TTAA 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 91
MvaI CCWGG 1 cut(s) 91
MvnI CGCG 1 cut(s) 244
NdeI CATATG 1 cut(s) 96
NdeII GATC 1 cut(s) 7
NlaIII CATG 1 cut(s) 51
NlaIV GGNNCC 2 cut(s) 9, 88
NspI RCATGY 1 cut(s) 51
NspV TTCGAA 1 cut(s) 145
PauI GCGCGC 1 cut(s) 242
PciI ACATGT 1 cut(s) 47
PkrI GCNGC 3 cut(s) 103, 238, 241
PmaCI CACGTG 1 cut(s) 128
PmlI CACGTG 1 cut(s) 128
Ppu21I YACGTR 1 cut(s) 128
PscI ACATGT 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 89
PspCI CACGTG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 9, 88
PsuI RGATCY 1 cut(s) 7
PteI GCGCGC 1 cut(s) 242
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 3 cut(s) 102, 237, 240
Sau3AI GATC 1 cut(s) 7
ScaI AGTACT 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 91
SetI ASST 4 cut(s) 70, 130, 184, 196
SfaNI GCATC 1 cut(s) 44
SfuI TTCGAA 1 cut(s) 145
SmlI CTYRAG 2 cut(s) 107, 167
SmoI CTYRAG 2 cut(s) 107, 167
Sse9I AATT 2 cut(s) 136, 228
SsiI CCGC 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 89
TaiI ACGT 2 cut(s) 130, 184
TaqI TCGA 1 cut(s) 145
TasI AATT 2 cut(s) 136, 228
TatI WGTACW 1 cut(s) 153
TauI GCSGC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TseI GCWGC 2 cut(s) 101, 239
TspGWI ACGGA 1 cut(s) 64
XceI RCATGY 1 cut(s) 51
ZrmI AGTACT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.