Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011135

Physical Location & Seq

Genomic Coordinates Forward (+)

21296120 .. 21297004

Gene Structure 885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g26400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGTGAACCTACAGAAAAGCCGCCCAAGGAAATTGAAAGCGAAGACGAAGAGGACCAGAACTTCGATACCCTCGGACTCGATGGTCGTCTTACGCGTGCCCTAAACAAGAAGAAAATTCACAAGCCCACGCCCATTCAGCTAGTCGCTATTCCTCTCACCTTCAAGGTAAGACATTTGCTTCAGAAGCTGTTCGCTTCGGAATCAAAGAAGAAACTTGCTCCGAGTGCAATCGTTCTCGTCCCTACCCGGGAACTCTCTCAGCAGGTTTATTCAGAGGTTTCATCATTGATTGAATTCTGTAGAGCTCCTTTGAAAGTTGTACAGTTGACAAGCAGCATGCCTGCTCTTGATTGGCGGACAGCTTTAGCGGCACTACCTGAGATTCTGGTTATTACACCAGCTTGCATAAAGAAATGCTTGTCAGATGGTGTTCTTCAACCAGCTTCCATTGATGATTCACTAGAAATTCTCGTTCTCGATGAGGTGAGGGAACTGTTTTTTGCACAGGCGCAGAAACATATTTGTCAGTTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

180

Amino Acids

19.97

Weight (kDa)

5.96

Isoelectric Point (pI)

57.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34910
fragaria_vesca	FvH4_5g29390 FvH4_5g29390
malus_domestica	MD02G1190200.v1.1
prunus_persica	Prupe.6G216200_v2.0.a1
pyrus_communis	pycom02g15430 pycom15g26400
rosa_chinensis	RchiOBHm_Chr7g0222281
rosa_laevigata	RLG00000002079 RLG00000016281
rosa_multiflora	Rmu_sc0013580.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237230
rosa_rugosa	Rorug02G0023300 Rorug02G0023400 Rorug07G0206900
rosa_samantha	Rh7AG348700 Rh7BG338700 Rh7CG366200 Rh7DG345700
rosa_wichuraiana	Rw7G029490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	256
AccII	CGCG	1 cut(s)	97
AciI	CCGC	3 cut(s)	23, 358, 371
AcsI	RAATTY	3 cut(s)	117, 296, 468
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	95
AgsI	TTSAA	5 cut(s)	38, 166, 296, 316, 440
AluBI	AGCT	6 cut(s)	142, 190, 308, 365, 404, 446
AluI	AGCT	6 cut(s)	142, 190, 308, 365, 404, 446
Alw21I	GWGCWC	1 cut(s)	310
AlwNI	CAGNNNCTG	1 cut(s)	190
Ama87I	CYCGRG	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	336
ApoI	RAATTY	3 cut(s)	117, 296, 468
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	2 cut(s)	250, 251
AsuHPI	GGTGA	3 cut(s)	17, 151, 499
AvaI	CYCGRG	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	2 cut(s)	77, 422
BcnI	CCSGG	2 cut(s)	250, 251
BfaI	CTAG	2 cut(s)	143, 464
BfmI	CTRYAG	2 cut(s)	12, 301
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	3 cut(s)	23, 337, 372
BlsI	GCNGC	3 cut(s)	24, 338, 373
Bme1390I	CCNGG	2 cut(s)	250, 251
Bme18I	GGWCC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	250, 251
BpiI	GAAGAC	1 cut(s)	51
BpuMI	CCSGG	2 cut(s)	250, 251
BsaJI	CCNNGG	3 cut(s)	27, 73, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
BseDI	CCNNGG	3 cut(s)	27, 73, 249
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	2 cut(s)	275, 372
BseSI	GKGCMC	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	348
Bsh1236I	CGCG	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	249
Bsp1286I	GDGCHC	2 cut(s)	103, 310
Bsp1407I	TGTACA	1 cut(s)	322
BspACI	CCGC	3 cut(s)	23, 358, 371
BspCNI	CTCAG	2 cut(s)	274, 373
BspFNI	CGCG	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	256
BsrGI	TGTACA	1 cut(s)	322
BssECI	CCNNGG	3 cut(s)	27, 73, 249
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	327, 498
Bst6I	CTCTTC	1 cut(s)	45
BstAUI	TGTACA	1 cut(s)	322
BstC8I	GCNNGC	4 cut(s)	99, 341, 345, 406
BstDEI	CTNAG	2 cut(s)	261, 381
BstFNI	CGCG	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	514
BstMWI	GCNNNNNNNGC	4 cut(s)	139, 187, 227, 371
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	2 cut(s)	248, 249
BstSFI	CTRYAG	2 cut(s)	12, 301
BstSLI	GKGCMC	1 cut(s)	103
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	348
BstV2I	GAAGAC	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	4 cut(s)	99, 341, 345, 406
CaiI	CAGNNNCTG	1 cut(s)	190
CfoI	GCGC	1 cut(s)	514
Cfr13I	GGNCC	1 cut(s)	55
Cfr9I	CCCGGG	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	8 cut(s)	22, 127, 142, 190, 308, 365, 404, 446
CviKI_1	RGCY	8 cut(s)	22, 127, 142, 190, 308, 365, 404, 446
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	2 cut(s)	261, 381
DrdI	GACNNNNNNGTC	1 cut(s)	84
DseDI	GACNNNNNNGTC	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	373
Ecl136II	GAGCTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	343
FaiI	YATR	3 cut(s)	341, 410, 522
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	1 cut(s)	339
Fnu4HI	GCNGC	3 cut(s)	23, 337, 372
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	3 cut(s)	23, 337, 372
FspBI	CTAG	2 cut(s)	143, 464
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	3 cut(s)	23, 337, 372
HapII	CCGG	1 cut(s)	250
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	1 cut(s)	343
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	4 cut(s)	78, 203, 385, 458
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	3 cut(s)	17, 151, 499
Hpy166II	GTNNAC	2 cut(s)	8, 330
Hpy188I	TCNGA	6 cut(s)	77, 186, 202, 225, 277, 427
Hpy188III	TCNNGA	2 cut(s)	350, 479
Hpy8I	GTNNAC	2 cut(s)	8, 330
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	2 cut(s)	327, 498
HpyCH4V	TGCA	3 cut(s)	230, 408, 506
HpyF10VI	GCNNNNNNNGC	4 cut(s)	139, 187, 227, 371
HpyF3I	CTNAG	2 cut(s)	261, 381
Hsp92II	CATG	1 cut(s)	343
HspAI	GCGC	1 cut(s)	512
LmnI	GCTCC	2 cut(s)	226, 313
LpnPI	CCDG	9 cut(s)	71, 251, 263, 357, 374, 393, 414, 456, 494
Lsp1109I	GCAGC	1 cut(s)	348
MaeI	CTAG	2 cut(s)	143, 464
MboII	GAAGA	5 cut(s)	56, 62, 124, 223, 428
MhlI	GDGCHC	2 cut(s)	103, 310
MluCI	AATT	4 cut(s)	33, 117, 296, 468
MluI	ACGCGT	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	72
MnlI	CCTC	6 cut(s)	46, 83, 165, 271, 478, 483
MroXI	GAANNNNTTC	1 cut(s)	191
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	2 cut(s)	250, 251
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	4 cut(s)	139, 187, 227, 371
NciI	CCSGG	2 cut(s)	250, 251
NlaIII	CATG	1 cut(s)	343
NspI	RCATGY	1 cut(s)	343
PaeI	GCATGC	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	3 cut(s)	203, 385, 458
PkrI	GCNGC	3 cut(s)	24, 338, 373
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	190
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SacI	GAGCTC	1 cut(s)	310
SatI	GCNGC	3 cut(s)	23, 337, 372
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	2 cut(s)	250, 251
SduI	GDGCHC	2 cut(s)	103, 310
SfcI	CTRYAG	2 cut(s)	12, 301
SinI	GGWCC	1 cut(s)	55
SmaI	CCCGGG	1 cut(s)	251
SphI	GCATGC	1 cut(s)	343
Sse9I	AATT	4 cut(s)	33, 117, 296, 468
SsiI	CCGC	3 cut(s)	23, 358, 371
SspMI	CTAG	2 cut(s)	143, 464
SstI	GAGCTC	1 cut(s)	310
StyD4I	CCNGG	2 cut(s)	248, 249
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	327, 498
TaqI	TCGA	3 cut(s)	66, 81, 480
TasI	AATT	4 cut(s)	33, 117, 296, 468
TatI	WGTACW	1 cut(s)	322
TauI	GCSGC	2 cut(s)	25, 374
TfiI	GAWTC	3 cut(s)	203, 385, 458
TseI	GCWGC	1 cut(s)	336
TspDTI	ATGAA	1 cut(s)	273
TspMI	CCCGGG	1 cut(s)	249
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	3 cut(s)	117, 296, 468
XceI	RCATGY	1 cut(s)	343
XmaI	CCCGGG	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	2 cut(s)	143, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.