Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011135

Physical Location & Seq

Genomic Coordinates Forward (+)

1853797 .. 1855486

Gene Structure 1690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0023400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCTCCGGCATATCAACATAAGGACAATGAGATTAAGTCAGATGATGAAGCTTCTGCTTCACCGAGGGTCATGGCTTGCTGTTGGGGTCAAGCTGAAGGTTCCTTTTCCTGGGAGTCTTTCAACTACACTGAAAACTGCAATGATACTGTTACTTGGCTCCATAATTATTATGAAAAAAAACGGGTCTTGAAGTTCGTGACTGATCACCAACCAAGTGTTGTGGTTATCGGAGCTGTTAATATGTCTTGTACTCTCATAAGACAACTTATGTTCTGGGTAAGAGGAGAAGTGAGTGAAAAGACTAAAGCTTTGTGTCCCTTCAGGATTGTTTATGGGGATGAATCTTTGGGTCGCCTGTATGAAAATTCTCAGACCTCTTCCAATCAGCTACCTGGGCAATCAGATAATGTCAAGCGGGCAGTGGCTCTTGGGTGTTATCTTCAAAATCCACTAGCAATGGTTGCCACACTCTGCGGACCTGGAAGAGATATCTTATCTTGGAAATTGCTCAGTTCCCCTTTTGAGGACATTCTCACTCCGGACGAGAAGTATAAGGGTTTTCGGGACCCGAGGAAAGAGTATGAAGAACCAAGTGTTGATGAACTTTTTCATCTGCTCACTTGTTTAACTGATGATGCCATTTGTGAAGGAAGAATTGTGCAGGCAACGGTGTGCAGCGTGTGTCCTATTAGGGCATCTTGTAATACTGAACTTGGATTGAGGGGTGCGCCTCGGAAAGCAGACTTTTCAGATCATGGAAGGCGTACTAAAGACTTGAGTAAAAAGCTGAAGAAGGGTGACATTATCACTTGCAAGATCAAAACTGTAAAAAAGAGGCACTTTGAGGCATGCCTTAGTAGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

289

Amino Acids

32.57

Weight (kDa)

7.87

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YqgF	PF14639	63 - 159	9.2e-09	Holliday-junction resolvase-like of SPT6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34910
fragaria_vesca	FvH4_5g29390 FvH4_5g29390
malus_domestica	MD02G1190200.v1.1
prunus_persica	Prupe.6G216200_v2.0.a1
pyrus_communis	pycom02g15430 pycom15g26400
rosa_chinensis	RchiOBHm_Chr7g0222281
rosa_laevigata	RLG00000002079 RLG00000016281
rosa_multiflora	Rmu_sc0013580.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237230
rosa_rugosa	Rorug02G0023300 Rorug02G0023400 Rorug07G0206900
rosa_samantha	Rh7AG348700 Rh7BG338700 Rh7CG366200 Rh7DG345700
rosa_wichuraiana	Rw7G029490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	541
AciI	CCGC	2 cut(s)	418, 477
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	3 cut(s)	117, 307, 812
AfaI	GTAC	2 cut(s)	253, 769
AfiI	CCNNNNNNNGG	2 cut(s)	111, 526
AgsI	TTSAA	3 cut(s)	124, 193, 446
AjnI	CCWGG	3 cut(s)	110, 394, 481
AluBI	AGCT	6 cut(s)	53, 95, 236, 311, 391, 790
AluI	AGCT	6 cut(s)	53, 95, 236, 311, 391, 790
Ama87I	CYCGRG	1 cut(s)	571
Aor13HI	TCCGGA	1 cut(s)	541
ApeKI	GCWGC	1 cut(s)	678
ApoI	RAATTY	1 cut(s)	367
ArsI	GACNNNNNNTTYG	2 cut(s)	295, 327
Asp700I	GAANNNNTTC	1 cut(s)	609
AspLEI	GCGC	1 cut(s)	733
AspS9I	GGNCC	2 cut(s)	479, 568
AsuHPI	GGTGA	3 cut(s)	54, 200, 812
AvaI	CYCGRG	1 cut(s)	571
AvaII	GGWCC	2 cut(s)	479, 568
BbvI	GCAGC	1 cut(s)	690
BciT130I	CCWGG	3 cut(s)	112, 396, 483
BclI	TGATCA	1 cut(s)	205
BfaI	CTAG	1 cut(s)	455
BisI	GCNGC	1 cut(s)	679
BlsI	GCNGC	1 cut(s)	680
Bme1390I	CCNGG	3 cut(s)	112, 396, 483
Bme18I	GGWCC	2 cut(s)	479, 568
BmeT110I	CYCGRG	1 cut(s)	571
BmgT120I	GGNCC	2 cut(s)	479, 568
BmiI	GGNNCC	5 cut(s)	6, 103, 161, 569, 570
BmrFI	CCNGG	3 cut(s)	112, 396, 483
BmsI	GCATC	2 cut(s)	628, 707
BpuEI	CTTGAG	1 cut(s)	799
BsaJI	CCNNGG	5 cut(s)	65, 111, 395, 572, 734
BsaWI	WCCGGW	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 526
Bse3DI	GCAATG	2 cut(s)	148, 465
BseAI	TCCGGA	1 cut(s)	541
BseBI	CCWGG	3 cut(s)	112, 396, 483
BseDI	CCNNGG	5 cut(s)	65, 111, 395, 572, 734
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	2 cut(s)	111, 526
BseMI	GCAATG	2 cut(s)	148, 465
BseMII	CTCAG	2 cut(s)	386, 526
BseRI	GAGGAG	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	690
BsgI	GTGCAG	2 cut(s)	683, 697
BsiHKCI	CYCGRG	1 cut(s)	571
BsiSI	CCGG	2 cut(s)	8, 542
BslFI	GGGAC	2 cut(s)	303, 581
BslI	CCNNNNNNNGG	2 cut(s)	111, 526
BsmFI	GGGAC	2 cut(s)	303, 581
BsoBI	CYCGRG	1 cut(s)	571
Bsp13I	TCCGGA	1 cut(s)	541
Bsp143I	GATC	3 cut(s)	205, 754, 819
BspACI	CCGC	2 cut(s)	418, 477
BspCNI	CTCAG	2 cut(s)	385, 525
BspEI	TCCGGA	1 cut(s)	541
BspLI	GGNNCC	5 cut(s)	6, 103, 161, 569, 570
BsrDI	GCAATG	2 cut(s)	148, 465
BssECI	CCNNGG	5 cut(s)	65, 111, 395, 572, 734
BssMI	GATC	3 cut(s)	205, 754, 819
Bst2UI	CCWGG	3 cut(s)	112, 396, 483
Bst4CI	ACNGT	3 cut(s)	151, 673, 829
Bst6I	CTCTTC	2 cut(s)	385, 481
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstC8I	GCNNGC	4 cut(s)	79, 420, 666, 853
BstDEI	CTNAG	3 cut(s)	372, 512, 857
BstF5I	GGATG	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	733
BstKTI	GATC	3 cut(s)	208, 757, 822
BstMBI	GATC	3 cut(s)	205, 754, 819
BstMWI	GCNNNNNNNGC	2 cut(s)	397, 464
BstNI	CCWGG	3 cut(s)	112, 396, 483
BstNSI	RCATGY	1 cut(s)	855
BstSCI	CCNGG	3 cut(s)	110, 394, 481
BstV1I	GCAGC	1 cut(s)	690
BtsCI	GGATG	1 cut(s)	346
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	2 cut(s)	129, 429
Cac8I	GCNNGC	4 cut(s)	79, 420, 666, 853
CfoI	GCGC	1 cut(s)	733
Cfr13I	GGNCC	2 cut(s)	479, 568
Csp6I	GTAC	2 cut(s)	252, 768
CspCI	CAANNNNNGTGG	2 cut(s)	204, 239
CviAII	CATG	3 cut(s)	73, 758, 852
CviQI	GTAC	2 cut(s)	252, 768
DdeI	CTNAG	3 cut(s)	372, 512, 857
DpnI	GATC	3 cut(s)	207, 756, 821
DpnII	GATC	3 cut(s)	205, 754, 819
Eam1104I	CTCTTC	2 cut(s)	385, 481
EarI	CTCTTC	2 cut(s)	385, 481
Eco32I	GATATC	1 cut(s)	493
Eco47I	GGWCC	2 cut(s)	479, 568
Eco57I	CTGAAG	3 cut(s)	117, 307, 812
Eco88I	CYCGRG	1 cut(s)	571
EcoO109I	RGGNCCY	1 cut(s)	568
EcoRII	CCWGG	3 cut(s)	110, 394, 481
EcoRV	GATATC	1 cut(s)	493
FaeI	CATG	3 cut(s)	76, 761, 855
FalI	AAGNNNNNCTT	2 cut(s)	827, 859
FaqI	GGGAC	2 cut(s)	303, 581
FatI	CATG	3 cut(s)	72, 757, 851
FauI	CCCGC	1 cut(s)	411
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	1 cut(s)	679
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	1 cut(s)	679
FspBI	CTAG	1 cut(s)	455
GlaI	GCGC	1 cut(s)	732
GluI	GCNGC	1 cut(s)	679
HapII	CCGG	2 cut(s)	8, 542
HhaI	GCGC	1 cut(s)	733
Hin1II	CATG	3 cut(s)	76, 761, 855
Hin6I	GCGC	1 cut(s)	731
HinP1I	GCGC	1 cut(s)	731
HindIII	AAGCTT	2 cut(s)	51, 309
HinfI	GANTC	2 cut(s)	116, 344
HpaII	CCGG	2 cut(s)	8, 542
HphI	GGTGA	3 cut(s)	54, 200, 812
Hpy188I	TCNGA	6 cut(s)	43, 233, 375, 406, 738, 754
Hpy188III	TCNNGA	5 cut(s)	190, 199, 325, 542, 566
HpyAV	CCTTC	5 cut(s)	92, 331, 644, 756, 790
HpyCH4III	ACNGT	3 cut(s)	151, 673, 829
HpyCH4V	TGCA	4 cut(s)	141, 664, 678, 816
HpyF10VI	GCNNNNNNNGC	2 cut(s)	397, 464
HpyF3I	CTNAG	3 cut(s)	372, 512, 857
Hsp92II	CATG	3 cut(s)	76, 761, 855
HspAI	GCGC	1 cut(s)	731
KflI	GGGWCCC	1 cut(s)	568
Kpn2I	TCCGGA	1 cut(s)	541
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	205, 754, 819
LmnI	GCTCC	3 cut(s)	10, 165, 233
Lsp1109I	GCAGC	1 cut(s)	690
LweI	GCATC	2 cut(s)	628, 707
MaeI	CTAG	1 cut(s)	455
MaeIII	GTNAC	3 cut(s)	151, 199, 800
MalI	GATC	3 cut(s)	207, 756, 821
MboI	GATC	3 cut(s)	205, 754, 819
MboII	GAAGA	6 cut(s)	372, 434, 498, 599, 666, 805
MluCI	AATT	4 cut(s)	166, 367, 506, 657
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	9 cut(s)	60, 278, 388, 520, 567, 717, 744, 831, 841
MroI	TCCGGA	1 cut(s)	541
MroXI	GAANNNNTTC	1 cut(s)	609
MseI	TTAA	3 cut(s)	36, 240, 629
MspI	CCGG	2 cut(s)	8, 542
MspR9I	CCNGG	3 cut(s)	112, 396, 483
MvaI	CCWGG	3 cut(s)	112, 396, 483
MwoI	GCNNNNNNNGC	2 cut(s)	397, 464
NdeII	GATC	3 cut(s)	205, 754, 819
NlaIII	CATG	3 cut(s)	76, 761, 855
NlaIV	GGNNCC	5 cut(s)	6, 103, 161, 569, 570
NmuCI	GTSAC	2 cut(s)	199, 800
NspI	RCATGY	1 cut(s)	855
PaeI	GCATGC	1 cut(s)	855
PdmI	GAANNNNTTC	1 cut(s)	609
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	680
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	568
Psp5II	RGGWCCY	1 cut(s)	568
Psp6I	CCWGG	3 cut(s)	110, 394, 481
PspGI	CCWGG	3 cut(s)	110, 394, 481
PspN4I	GGNNCC	5 cut(s)	6, 103, 161, 569, 570
PspPI	GGNCC	2 cut(s)	479, 568
PspPPI	RGGWCCY	1 cut(s)	568
RsaI	GTAC	2 cut(s)	253, 769
RsaNI	GTAC	2 cut(s)	252, 768
SaqAI	TTAA	3 cut(s)	36, 240, 629
SatI	GCNGC	1 cut(s)	679
Sau3AI	GATC	3 cut(s)	205, 754, 819
Sau96I	GGNCC	2 cut(s)	479, 568
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	3 cut(s)	112, 396, 483
SfaNI	GCATC	2 cut(s)	628, 707
SinI	GGWCC	2 cut(s)	479, 568
SmlI	CTYRAG	1 cut(s)	778
SmoI	CTYRAG	1 cut(s)	778
SphI	GCATGC	1 cut(s)	855
Sse9I	AATT	4 cut(s)	166, 367, 506, 657
SsiI	CCGC	2 cut(s)	418, 477
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	3 cut(s)	110, 394, 481
TaaI	ACNGT	3 cut(s)	151, 673, 829
TasI	AATT	4 cut(s)	166, 367, 506, 657
TatI	WGTACW	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	3 cut(s)	36, 240, 629
Tru9I	TTAA	3 cut(s)	36, 240, 629
TscAI	CASTG	2 cut(s)	136, 429
TseFI	GTSAC	2 cut(s)	199, 800
TseI	GCWGC	1 cut(s)	678
Tsp45I	GTSAC	2 cut(s)	199, 800
TspDTI	ATGAA	7 cut(s)	63, 189, 357, 378, 600, 602, 618
TspRI	CASTG	2 cut(s)	136, 429
VpaK11BI	GGWCC	2 cut(s)	479, 568
XapI	RAATTY	1 cut(s)	367
XceI	RCATGY	1 cut(s)	855
XmnI	GAANNNNTTC	1 cut(s)	609
XspI	CTAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.