MD02G1190200.v1.1

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
17529867 .. 17535800
5934 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1190200.v1.1.491

Sequence Viewer

Length: 1788 bp
ATGGCTGAAACCACAGAAAAGCCGCCCAAGGAAATTGAAAGCGAAGAAGAAGAGGACCAGACCTTCGAAACCCTCGGGCTTGATGGTCGCCTTATCCGTGCCCTAAACAAGAAGAAAATTCATAAGCCCACGCCCATTCAGCAAGTCGCTATCCCTCTCATCCTTCAAGGTAAGGATGTGGTTGCTAGGGCAAAGACTGGTTCTGGGAAAACATTTGCGTATCTGCTTCCGTTGCTTCAGAAGCTGTTTGCTTCTGAATCAAAGAAGAAACTTGCTCCCAGTGCAATCGTTCTCGTGCCTACTCGGGAACTCTCTCAGCAGGTTTATACAGAAGTTTCATCATTGATTGAATTCTGTAGAGTTCCATTGAAAGTTGTACAGTTGACAAGCAGCATGCCTGCTCCTGATTGGAAGACGGCTTTAGCTGCACTACCTGAGATTCTGGTTACTACACCAGCTTGCATAAAGAAATGCTTGTCAGATGGTGTTCTTCAACCAGCTTCCATTGATGATTCACTAGAAATTCTCGTTCTCGATGAGGCAGATCTTCTGTTGTCATATGGTTATGAGGCAGATATAAAAGCATTTACACCTCACATCCCTAAGCGTTGTCAATGTCTTCTTATGTCTGCCACCGCAAGTGATGATGTTGAAAAACTGAAGAAGCTGATTCTGCATAACTCTTACATTTTGACTTTACCTGAAGTTGGAGATATCAAGGATGATGTCATCCCGAAAAATGTTCAGCAATTCTGGATATCGTGCAGTTTTCGTGACAAGTTACTGTACATACTGTCCCTCTTGAAGTTGGAGCTGGTTCAGAAAAAAGTTCTGATATTCACTAATACAATTGACATGGGGTTCAGATTAAAACTATTTCTGGAAAAGTTTGGAATCAGATCAGCTGTTTTAAACTCAGAGTTGCCACAAAATTCTCGTCTGCACATTCTTGAGGAATTCAATGCTGGGCTTTTTGATTATTTGATTGCGACTGATAACAGAAAATCACAAGAGAGTGAAGACAAGGCGGAGAGTAGTATTGAACTAAAAAAATCTAGAAGGCATGCTAAACATAAAGCTGACTCTGAGTTTGGAGTGGTGCGGGGAATTGACTTCAAAAATGTACACACGGTTGTAAATTTGGATATGCCTCTAAGTGCTGAAGGATATGTTCATCGAATCGGACGTACAGGAAGGGCATATAGTACTGGTGCTTCTATCTCCCTTGTGTCTCCAGATGAGATAACAATCTTTGAAGAAATAAAATCCTTTTTGGGGGATGATGAGAAAGACGATTCAAACTTAATTGCTCCATTTCCTTTACTGACCAAGAACGCAGTGGAGTCTTTACGATATAGAGCTGAGGATGTTGCAAAGAGTGTGACAAAGATTGCTGTCAGAGAATCGCGAGCTCAAGATTTGAGAAATGAAATTCTCAATTCTGAAAAGTTGAAATCTCATTTTGAAGTTAATCCAAGAGACCTAGATCTGTTGAAACATGACAAAGTTCTCAGCAAGAAGCCCCCCGCTCCTCACCTACGTGATGTGCCTGATTACCTGTTGGACGCAACTACTAAAGAAGCCAGCAAGACCGTTAAGCTTGCTAGAGCTGCAATGGGAAATCCCAACCCTGCTCGCCGTAATGGATATAAGAAAAAAACCAAAAAGAACAAGGACCCCCTCAAGACTTTCACTACGGAGGGACAAAAGAGAGCTCGTAGGGGCGGGTCGAAGGCAGAAGGAAAAGACGGCAATGACAACCATAGACAAAAGAAGAGAAGGGCGTAA

Protein Analysis

596

Amino Acids

66.71

Weight (kDa)

9.16

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 42 - 191 1e-05 Type III restriction enzyme, res subunit
DEAD PF00270 44 - 219 9.4e-38 DEAD/DEAH box helicase
Helicase_C PF00271 263 - 400 1.3e-18 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011135)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 310
AccBSI CCGCTC 1 cut(s) 1529
AccII CGCG 1 cut(s) 1408
AciI CCGC 6 cut(s) 23, 636, 1028, 1102, 1527, 1725
AcsI RAATTY 7 cut(s) 117, 350, 522, 931, 956, 1138, 1431
AcuI CTGAAG 4 cut(s) 221, 680, 723, 1182
AfaI GTAC 5 cut(s) 378, 788, 1125, 1189, 1207
AfiI CCNNNNNNNGG 2 cut(s) 707, 1275
AleI CACNNNNGTG 1 cut(s) 1539
Alw21I GWGCWC 2 cut(s) 1414, 1717
Alw26I GTCTC 2 cut(s) 1236, 1473
AlwNI CAGNNNCTG 1 cut(s) 244
Ama87I CYCGRG 2 cut(s) 74, 303
ApeKI GCWGC 3 cut(s) 390, 425, 1610
ApoI RAATTY 7 cut(s) 117, 350, 522, 931, 956, 1138, 1431
ArsI GACNNNNNNTTYG 6 cut(s) 47, 79, 922, 954, 1073, 1105
AspS9I GGNCC 2 cut(s) 55, 1675
AsuHPI GGTGA 1 cut(s) 1526
AsuII TTCGAA 1 cut(s) 66
AvaI CYCGRG 2 cut(s) 74, 303
AvaII GGWCC 2 cut(s) 55, 1675
BaeGI GKGCMC 1 cut(s) 103
BanII GRGCYC 2 cut(s) 1414, 1717
BarI GAAGNNNNNNTAC 2 cut(s) 1198, 1230
BauI CACGAG 1 cut(s) 293
BbsI GAAGAC 3 cut(s) 419, 611, 1026
Bbv12I GWGCWC 2 cut(s) 1414, 1717
BbvCI CCTCAGC 1 cut(s) 1362
BbvI GCAGC 3 cut(s) 402, 412, 1597
BccI CCATC 2 cut(s) 77, 476
BceAI ACGGC 3 cut(s) 432, 1623, 1765
BcoDI GTCTC 2 cut(s) 1236, 1473
BfaI CTAG 5 cut(s) 186, 518, 1056, 1484, 1605
BfmI CTRYAG 1 cut(s) 355
BfuAI ACCTGC 1 cut(s) 310
BglII AGATCT 2 cut(s) 544, 1486
BisI GCNGC 4 cut(s) 23, 391, 426, 1611
BlsI GCNGC 4 cut(s) 24, 392, 427, 1612
BmcAI AGTACT 1 cut(s) 1207
Bme18I GGWCC 2 cut(s) 55, 1675
BmeT110I CYCGRG 2 cut(s) 74, 303
BmgT120I GGNCC 2 cut(s) 55, 1675
BmiI GGNNCC 1 cut(s) 1677
BmrI ACTGGG 1 cut(s) 273
BmuI ACTGGG 1 cut(s) 273
BpiI GAAGAC 3 cut(s) 419, 611, 1026
BpmI CTGGAG 1 cut(s) 1218
Bpu10I CCTNAGC 2 cut(s) 603, 1362
Bpu14I TTCGAA 1 cut(s) 66
BpuEI CTTGAG 3 cut(s) 971, 1398, 1667
BsaAI YACGTR 1 cut(s) 1541
BsaBI GATNNNNATC 1 cut(s) 1247
BsaI GGTCTC 1 cut(s) 1473
BsaJI CCNNGG 2 cut(s) 27, 73
Bsc4I CCNNNNNNNGG 2 cut(s) 707, 1275
Bse1I ACTGG 3 cut(s) 202, 279, 1213
Bse3DI GCAATG 2 cut(s) 1620, 1759
Bse8I GATNNNNATC 1 cut(s) 1247
BseDI CCNNGG 2 cut(s) 27, 73
BseGI GGATG 7 cut(s) 159, 181, 597, 727, 729, 1285, 1372
BseJI GATNNNNATC 1 cut(s) 1247
BseLI CCNNNNNNNGG 2 cut(s) 707, 1275
BseMI GCAATG 2 cut(s) 1620, 1759
BseMII CTCAG 6 cut(s) 329, 426, 930, 1077, 1353, 1525
BseNI ACTGG 3 cut(s) 202, 279, 1213
BseRI GAGGAG 1 cut(s) 1521
BseSI GKGCMC 1 cut(s) 103
BseXI GCAGC 3 cut(s) 402, 412, 1597
BseYI CCCAGC 1 cut(s) 965
BsgI GTGCAG 3 cut(s) 411, 784, 926
Bsh1236I CGCG 1 cut(s) 1408
BsiHKAI GWGCWC 2 cut(s) 1414, 1717
BsiHKCI CYCGRG 2 cut(s) 74, 303
BslFI GGGAC 2 cut(s) 781, 1716
BslI CCNNNNNNNGG 2 cut(s) 707, 1275
BsmAI GTCTC 2 cut(s) 1236, 1473
BsmFI GGGAC 2 cut(s) 781, 1716
Bso31I GGTCTC 1 cut(s) 1473
BsoBI CYCGRG 2 cut(s) 74, 303
Bsp119I TTCGAA 1 cut(s) 66
Bsp1286I GDGCHC 3 cut(s) 103, 1414, 1717
Bsp1407I TGTACA 3 cut(s) 376, 786, 1123
Bsp143I GATC 3 cut(s) 544, 899, 1486
Bsp68I TCGCGA 1 cut(s) 1408
BspACI CCGC 6 cut(s) 23, 636, 1028, 1102, 1527, 1725
BspCNI CTCAG 6 cut(s) 328, 427, 929, 1078, 1354, 1524
BspFNI CGCG 1 cut(s) 1408
BspLI GGNNCC 1 cut(s) 1677
BspMI ACCTGC 1 cut(s) 310
BspT104I TTCGAA 1 cut(s) 66
BspTNI GGTCTC 1 cut(s) 1473
BsrBI CCGCTC 1 cut(s) 1529
BsrDI GCAATG 2 cut(s) 1620, 1759
BsrGI TGTACA 3 cut(s) 376, 786, 1123
BsrI ACTGG 3 cut(s) 202, 279, 1213
BssECI CCNNGG 2 cut(s) 27, 73
BssMI GATC 3 cut(s) 544, 899, 1486
BssSI CACGAG 1 cut(s) 293
BssT1I CCWWGG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 293
Bst4CI ACNGT 5 cut(s) 381, 786, 795, 1132, 1594
Bst6I CTCTTC 2 cut(s) 45, 1769
BstAUI TGTACA 3 cut(s) 376, 786, 1123
BstBAI YACGTR 1 cut(s) 1541
BstBI TTCGAA 1 cut(s) 66
BstC8I GCNNGC 8 cut(s) 395, 399, 460, 1065, 1410, 1585, 1602, 1636
BstDEI CTNAG 8 cut(s) 315, 435, 603, 916, 1086, 1154, 1362, 1511
BstF5I GGATG 7 cut(s) 159, 181, 597, 727, 729, 1285, 1372
BstFNI CGCG 1 cut(s) 1408
BstKTI GATC 3 cut(s) 547, 902, 1489
BstMAI GTCTC 2 cut(s) 1236, 1473
BstMBI GATC 3 cut(s) 544, 899, 1486
BstMWI GCNNNNNNNGC 7 cut(s) 139, 232, 241, 281, 425, 673, 1610
BstNSI RCATGY 2 cut(s) 397, 1067
BstSFI CTRYAG 1 cut(s) 355
BstSLI GKGCMC 1 cut(s) 103
BstUI CGCG 1 cut(s) 1408
BstV1I GCAGC 3 cut(s) 402, 412, 1597
BstV2I GAAGAC 3 cut(s) 419, 611, 1026
BstX2I RGATCY 2 cut(s) 544, 1486
BstYI RGATCY 2 cut(s) 544, 1486
BtsCI GGATG 7 cut(s) 159, 181, 597, 727, 729, 1285, 1372
BtsI GCAGTG 1 cut(s) 1344
BtsIMutI CAGTG 2 cut(s) 286, 1344
BtuMI TCGCGA 1 cut(s) 1408
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 8 cut(s) 395, 399, 460, 1065, 1410, 1585, 1602, 1636
CaiI CAGNNNCTG 1 cut(s) 244
Cfr13I GGNCC 2 cut(s) 55, 1675
CseI GACGC 1 cut(s) 1574
Csp6I GTAC 5 cut(s) 377, 787, 1124, 1188, 1206
CviAII CATG 4 cut(s) 394, 856, 1064, 1499
CviQI GTAC 5 cut(s) 377, 787, 1124, 1188, 1206
DdeI CTNAG 8 cut(s) 315, 435, 603, 916, 1086, 1154, 1362, 1511
DpnI GATC 3 cut(s) 546, 901, 1488
DpnII GATC 3 cut(s) 544, 899, 1486
DraI TTTAAA 1 cut(s) 912
Eam1104I CTCTTC 2 cut(s) 45, 1769
EarI CTCTTC 2 cut(s) 45, 1769
EciI GGCGGA 1 cut(s) 1043
Ecl136II GAGCTC 2 cut(s) 1412, 1715
Eco130I CCWWGG 1 cut(s) 27
Eco24I GRGCYC 2 cut(s) 1414, 1717
Eco31I GGTCTC 1 cut(s) 1473
Eco32I GATATC 2 cut(s) 715, 759
Eco47I GGWCC 2 cut(s) 55, 1675
Eco53kI GAGCTC 2 cut(s) 1412, 1715
Eco57I CTGAAG 4 cut(s) 221, 680, 723, 1182
Eco88I CYCGRG 2 cut(s) 74, 303
EcoICRI GAGCTC 2 cut(s) 1412, 1715
EcoO109I RGGNCCY 1 cut(s) 1675
EcoRI GAATTC 2 cut(s) 350, 956
EcoRV GATATC 2 cut(s) 715, 759
EcoT14I CCWWGG 1 cut(s) 27
EcoT38I GRGCYC 2 cut(s) 1414, 1717
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 4 cut(s) 397, 859, 1067, 1502
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FaqI GGGAC 2 cut(s) 781, 1716
FatI CATG 4 cut(s) 393, 855, 1063, 1498
FauI CCCGC 3 cut(s) 1095, 1534, 1718
FauNDI CATATG 1 cut(s) 559
Fnu4HI GCNGC 4 cut(s) 23, 391, 426, 1611
FokI GGATG 7 cut(s) 146, 188, 584, 716, 734, 1292, 1379
FriOI GRGCYC 2 cut(s) 1414, 1717
Fsp4HI GCNGC 4 cut(s) 23, 391, 426, 1611
FspBI CTAG 5 cut(s) 186, 518, 1056, 1484, 1605
GluI GCNGC 4 cut(s) 23, 391, 426, 1611
GsaI CCCAGC 1 cut(s) 969
GsuI CTGGAG 1 cut(s) 1218
HgaI GACGC 1 cut(s) 1574
Hin1II CATG 4 cut(s) 397, 859, 1067, 1502
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HindIII AAGCTT 1 cut(s) 1598
HphI GGTGA 1 cut(s) 1526
Hpy166II GTNNAC 2 cut(s) 384, 1126
Hpy8I GTNNAC 2 cut(s) 384, 1126
HpyAV CCTTC 8 cut(s) 73, 173, 1053, 1157, 1188, 1726, 1733, 1773
HpyCH4III ACNGT 5 cut(s) 381, 786, 795, 1132, 1594
HpyCH4IV ACGT 2 cut(s) 1186, 1540
HpyCH4V TGCA 8 cut(s) 284, 428, 462, 676, 765, 943, 1373, 1613
HpyF10VI GCNNNNNNNGC 7 cut(s) 139, 232, 241, 281, 425, 673, 1610
HpyF3I CTNAG 8 cut(s) 315, 435, 603, 916, 1086, 1154, 1362, 1511
HpySE526I ACGT 2 cut(s) 1186, 1540
Hsp92II CATG 4 cut(s) 397, 859, 1067, 1502
Kzo9I GATC 3 cut(s) 544, 899, 1486
LmnI GCTCC 5 cut(s) 280, 406, 811, 1315, 1534
Lsp1109I GCAGC 3 cut(s) 402, 412, 1597
MaeI CTAG 5 cut(s) 186, 518, 1056, 1484, 1605
MaeII ACGT 2 cut(s) 1186, 1540
MaeIII GTNAC 4 cut(s) 445, 773, 780, 1381
MalI GATC 3 cut(s) 546, 901, 1488
MbiI CCGCTC 1 cut(s) 1529
MboI GATC 3 cut(s) 544, 899, 1486
MfeI CAATTG 1 cut(s) 849
MflI RGATCY 2 cut(s) 544, 1486
MhlI GDGCHC 3 cut(s) 103, 1414, 1717
MlyI GAGTC 2 cut(s) 1076, 1352
MmeI TCCRAC 3 cut(s) 688, 789, 1542
MseI TTAA 5 cut(s) 869, 911, 1304, 1470, 1596
MslI CAYNNNNRTG 1 cut(s) 1539
MspA1I CMGCKG 1 cut(s) 905
MunI CAATTG 1 cut(s) 849
MvnI CGCG 1 cut(s) 1408
MwoI GCNNNNNNNGC 7 cut(s) 139, 232, 241, 281, 425, 673, 1610
NdeI CATATG 1 cut(s) 559
NdeII GATC 3 cut(s) 544, 899, 1486
NlaIII CATG 4 cut(s) 397, 859, 1067, 1502
NlaIV GGNNCC 1 cut(s) 1677
NmuCI GTSAC 2 cut(s) 773, 1381
NruI TCGCGA 1 cut(s) 1408
NspI RCATGY 2 cut(s) 397, 1067
NspV TTCGAA 1 cut(s) 66
OliI CACNNNNGTG 1 cut(s) 1539
PaeI GCATGC 2 cut(s) 397, 1067
PcsI WCGNNNNNNNCGW 2 cut(s) 94, 1183
PfeI GAWTC 8 cut(s) 257, 439, 512, 670, 894, 1179, 1295, 1403
PkrI GCNGC 4 cut(s) 24, 392, 427, 1612
PleI GAGTC 2 cut(s) 1076, 1351
PpsI GAGTC 2 cut(s) 1076, 1351
Ppu21I YACGTR 1 cut(s) 1541
PpuMI RGGWCCY 1 cut(s) 1675
Psp124BI GAGCTC 2 cut(s) 1414, 1717
Psp5II RGGWCCY 1 cut(s) 1675
PspFI CCCAGC 1 cut(s) 965
PspN4I GGNNCC 1 cut(s) 1677
PspPI GGNCC 2 cut(s) 55, 1675
PspPPI RGGWCCY 1 cut(s) 1675
PstNI CAGNNNCTG 1 cut(s) 244
PsuI RGATCY 2 cut(s) 544, 1486
PvuII CAGCTG 1 cut(s) 905
RruI TCGCGA 1 cut(s) 1408
RsaI GTAC 5 cut(s) 378, 788, 1125, 1189, 1207
RsaNI GTAC 5 cut(s) 377, 787, 1124, 1188, 1206
RseI CAYNNNNRTG 1 cut(s) 1539
SacI GAGCTC 2 cut(s) 1414, 1717
SaqAI TTAA 5 cut(s) 869, 911, 1304, 1470, 1596
SatI GCNGC 4 cut(s) 23, 391, 426, 1611
Sau3AI GATC 3 cut(s) 544, 899, 1486
Sau96I GGNCC 2 cut(s) 55, 1675
ScaI AGTACT 1 cut(s) 1207
SchI GAGTC 2 cut(s) 1076, 1352
SduI GDGCHC 3 cut(s) 103, 1414, 1717
SfcI CTRYAG 1 cut(s) 355
SfuI TTCGAA 1 cut(s) 66
SinI GGWCC 2 cut(s) 55, 1675
SmiMI CAYNNNNRTG 1 cut(s) 1539
SmlI CTYRAG 3 cut(s) 950, 1413, 1682
SmoI CTYRAG 3 cut(s) 950, 1413, 1682
SphI GCATGC 2 cut(s) 397, 1067
SsiI CCGC 6 cut(s) 23, 636, 1028, 1102, 1527, 1725
SspMI CTAG 5 cut(s) 186, 518, 1056, 1484, 1605
SstI GAGCTC 2 cut(s) 1414, 1717
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 5 cut(s) 381, 786, 795, 1132, 1594
TaiI ACGT 2 cut(s) 1189, 1543
TaqI TCGA 4 cut(s) 66, 534, 1177, 1730
TatI WGTACW 4 cut(s) 376, 786, 1123, 1205
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 8 cut(s) 257, 439, 512, 670, 894, 1179, 1295, 1403
Tru1I TTAA 5 cut(s) 869, 911, 1304, 1470, 1596
Tru9I TTAA 5 cut(s) 869, 911, 1304, 1470, 1596
TscAI CASTG 2 cut(s) 286, 1344
TseFI GTSAC 2 cut(s) 773, 1381
TseI GCWGC 3 cut(s) 390, 425, 1610
Tsp45I GTSAC 2 cut(s) 773, 1381
TspDTI ATGAA 4 cut(s) 110, 327, 1163, 1443
TspGWI ACGGA 3 cut(s) 86, 219, 1712
TspRI CASTG 2 cut(s) 286, 1344
VpaK11BI GGWCC 2 cut(s) 55, 1675
XapI RAATTY 7 cut(s) 117, 350, 522, 931, 956, 1138, 1431
XbaI TCTAGA 1 cut(s) 1055
XceI RCATGY 2 cut(s) 397, 1067
XcmI CCANNNNNNNNNTGG 1 cut(s) 1336
XspI CTAG 5 cut(s) 186, 518, 1056, 1484, 1605
ZrmI AGTACT 1 cut(s) 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.