DEAD-box ATP-dependent RNA helicase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G34910 |
| fragaria_vesca | FvH4_5g29390 FvH4_5g29390 |
| malus_domestica | MD02G1190200.v1.1 |
| prunus_persica | Prupe.6G216200_v2.0.a1 |
| pyrus_communis | pycom02g15430 pycom15g26400 |
| rosa_chinensis | RchiOBHm_Chr7g0222281 |
| rosa_laevigata | RLG00000002079 RLG00000016281 |
| rosa_multiflora | Rmu_sc0013580.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00237230 |
| rosa_rugosa | Rorug02G0023300 Rorug02G0023400 Rorug07G0206900 |
| rosa_samantha | Rh7AG348700 Rh7BG338700 Rh7CG366200 Rh7DG345700 |
| rosa_wichuraiana | Rw7G029490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1226 |
| AarI | CACCTGC | 2 cut(s) | 547, 1624 |
| Acc36I | ACCTGC | 3 cut(s) | 394, 547, 1624 |
| AccB1I | GGYRCC | 1 cut(s) | 130 |
| AciI | CCGC | 4 cut(s) | 1299, 1484, 1701, 1734 |
| AclWI | GGATC | 2 cut(s) | 845, 1309 |
| AcoI | YGGCCR | 1 cut(s) | 1828 |
| AcsI | RAATTY | 2 cut(s) | 909, 1012 |
| AfaI | GTAC | 1 cut(s) | 1279 |
| AgsI | TTSAA | 9 cut(s) | 606, 745, 886, 952, 1042, 1207, 1346, 1556, 1798 |
| AhlI | ACTAGT | 1 cut(s) | 470 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 944, 976 |
| Alw21I | GWGCWC | 2 cut(s) | 853, 1504 |
| Alw26I | GTCTC | 5 cut(s) | 535, 1440, 1500, 1563, 1579 |
| AlwI | GGATC | 2 cut(s) | 845, 1309 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 338 |
| Ama87I | CYCGRG | 3 cut(s) | 387, 1497, 1640 |
| AoxI | GGCC | 2 cut(s) | 807, 1828 |
| ApeKI | GCWGC | 3 cut(s) | 563, 1296, 1776 |
| ApoI | RAATTY | 2 cut(s) | 909, 1012 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1413, 1445 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 956 |
| AsuHPI | GGTGA | 1 cut(s) | 1130 |
| AsuII | TTCGAA | 1 cut(s) | 144 |
| AsuNHI | GCTAGC | 1 cut(s) | 1690 |
| AvaI | CYCGRG | 3 cut(s) | 387, 1497, 1640 |
| BaeGI | GKGCMC | 1 cut(s) | 181 |
| BalI | TGGCCA | 1 cut(s) | 1830 |
| BanI | GGYRCC | 1 cut(s) | 130 |
| BanII | GRGCYC | 2 cut(s) | 582, 1504 |
| BbsI | GAAGAC | 1 cut(s) | 1877 |
| Bbv12I | GWGCWC | 2 cut(s) | 853, 1504 |
| BbvCI | CCTCAGC | 1 cut(s) | 1452 |
| BbvI | GCAGC | 3 cut(s) | 550, 1308, 1788 |
| BccI | CCATC | 5 cut(s) | 391, 1272, 1327, 1675, 1832 |
| BceAI | ACGGC | 2 cut(s) | 794, 1808 |
| BcoDI | GTCTC | 5 cut(s) | 535, 1440, 1500, 1563, 1579 |
| BcuI | ACTAGT | 1 cut(s) | 470 |
| BfuAI | ACCTGC | 3 cut(s) | 394, 547, 1624 |
| BglII | AGATCT | 3 cut(s) | 628, 1576, 1721 |
| BisI | GCNGC | 4 cut(s) | 564, 1297, 1701, 1777 |
| BlsI | GCNGC | 4 cut(s) | 565, 1298, 1702, 1778 |
| BmeT110I | CYCGRG | 3 cut(s) | 387, 1497, 1640 |
| BmiI | GGNNCC | 2 cut(s) | 132, 1822 |
| BmsI | GCATC | 2 cut(s) | 494, 1162 |
| BmtI | GCTAGC | 1 cut(s) | 1694 |
| BpiI | GAAGAC | 1 cut(s) | 1877 |
| BpmI | CTGGAG | 1 cut(s) | 299 |
| Bpu10I | CCTNAGC | 3 cut(s) | 852, 1452, 1503 |
| Bpu14I | TTCGAA | 1 cut(s) | 144 |
| BpuEI | CTTGAG | 2 cut(s) | 1052, 1650 |
| BsaBI | GATNNNNATC | 1 cut(s) | 920 |
| BsaJI | CCNNGG | 1 cut(s) | 686 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1711, 1741 |
| Bse1I | ACTGG | 2 cut(s) | 280, 1258 |
| Bse3DI | GCAATG | 2 cut(s) | 308, 1710 |
| Bse8I | GATNNNNATC | 1 cut(s) | 920 |
| BseDI | CCNNGG | 1 cut(s) | 686 |
| BseGI | GGATG | 5 cut(s) | 37, 1081, 1462, 1635, 1843 |
| BseJI | GATNNNNATC | 1 cut(s) | 920 |
| BseMI | GCAATG | 2 cut(s) | 308, 1710 |
| BseMII | CTCAG | 7 cut(s) | 510, 866, 1022, 1167, 1443, 1517, 1592 |
| BseNI | ACTGG | 2 cut(s) | 280, 1258 |
| BseRI | GAGGAG | 1 cut(s) | 1833 |
| BseSI | GKGCMC | 1 cut(s) | 181 |
| BseXI | GCAGC | 3 cut(s) | 550, 1308, 1788 |
| BsgI | GTGCAG | 4 cut(s) | 482, 743, 1596, 1602 |
| BshFI | GGCC | 2 cut(s) | 809, 1830 |
| BshNI | GGYRCC | 1 cut(s) | 130 |
| BsiHKAI | GWGCWC | 2 cut(s) | 853, 1504 |
| BsiHKCI | CYCGRG | 3 cut(s) | 387, 1497, 1640 |
| BsiSI | CCGG | 1 cut(s) | 567 |
| BslFI | GGGAC | 1 cut(s) | 797 |
| BsmAI | GTCTC | 5 cut(s) | 535, 1440, 1500, 1563, 1579 |
| BsmFI | GGGAC | 1 cut(s) | 797 |
| BsnI | GGCC | 2 cut(s) | 809, 1830 |
| BsoBI | CYCGRG | 3 cut(s) | 387, 1497, 1640 |
| Bsp119I | TTCGAA | 1 cut(s) | 144 |
| Bsp1286I | GDGCHC | 4 cut(s) | 181, 582, 853, 1504 |
| Bsp143I | GATC | 5 cut(s) | 628, 837, 1301, 1576, 1721 |
| BspACI | CCGC | 4 cut(s) | 1299, 1484, 1701, 1734 |
| BspANI | GGCC | 2 cut(s) | 809, 1830 |
| BspCNI | CTCAG | 7 cut(s) | 511, 865, 1021, 1168, 1444, 1516, 1593 |
| BspLI | GGNNCC | 2 cut(s) | 132, 1822 |
| BspMI | ACCTGC | 3 cut(s) | 394, 547, 1624 |
| BspOI | GCTAGC | 1 cut(s) | 1694 |
| BspPI | GGATC | 2 cut(s) | 845, 1309 |
| BspQI | GCTCTTC | 2 cut(s) | 105, 141 |
| BspT104I | TTCGAA | 1 cut(s) | 144 |
| BspT107I | GGYRCC | 1 cut(s) | 130 |
| BsrDI | GCAATG | 2 cut(s) | 308, 1710 |
| BsrI | ACTGG | 2 cut(s) | 280, 1258 |
| BssECI | CCNNGG | 1 cut(s) | 686 |
| BssMI | GATC | 5 cut(s) | 628, 837, 1301, 1576, 1721 |
| BssT1I | CCWWGG | 1 cut(s) | 686 |
| Bst4CI | ACNGT | 3 cut(s) | 1222, 1764, 1876 |
| Bst6I | CTCTTC | 5 cut(s) | 105, 120, 141, 798, 1101 |
| BstBI | TTCGAA | 1 cut(s) | 144 |
| BstC8I | GCNNGC | 4 cut(s) | 357, 1369, 1675, 1692 |
| BstF5I | GGATG | 5 cut(s) | 37, 1081, 1462, 1635, 1843 |
| BstKTI | GATC | 5 cut(s) | 631, 840, 1304, 1579, 1724 |
| BstMAI | GTCTC | 5 cut(s) | 535, 1440, 1500, 1563, 1579 |
| BstMBI | GATC | 5 cut(s) | 628, 837, 1301, 1576, 1721 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 319, 365, 433, 1700, 1740 |
| BstNSI | RCATGY | 1 cut(s) | 481 |
| BstSLI | GKGCMC | 1 cut(s) | 181 |
| BstV1I | GCAGC | 3 cut(s) | 550, 1308, 1788 |
| BstV2I | GAAGAC | 1 cut(s) | 1877 |
| BstX2I | RGATCY | 5 cut(s) | 628, 837, 1301, 1576, 1721 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1271, 1838 |
| BstYI | RGATCY | 5 cut(s) | 628, 837, 1301, 1576, 1721 |
| BsuRI | GGCC | 2 cut(s) | 809, 1830 |
| BtgZI | GCGATG | 1 cut(s) | 408 |
| BtsCI | GGATG | 5 cut(s) | 37, 1081, 1462, 1635, 1843 |
| BtsI | GCAGTG | 3 cut(s) | 465, 582, 853 |
| BtsIMutI | CAGTG | 4 cut(s) | 465, 582, 598, 853 |
| BveI | ACCTGC | 3 cut(s) | 394, 547, 1624 |
| Cac8I | GCNNGC | 4 cut(s) | 357, 1369, 1675, 1692 |
| CaiI | CAGNNNCTG | 1 cut(s) | 338 |
| CseI | GACGC | 1 cut(s) | 1664 |
| Csp6I | GTAC | 1 cut(s) | 1278 |
| CviAII | CATG | 3 cut(s) | 478, 937, 1589 |
| CviQI | GTAC | 1 cut(s) | 1278 |
| DpnI | GATC | 5 cut(s) | 630, 839, 1303, 1578, 1723 |
| DpnII | GATC | 5 cut(s) | 628, 837, 1301, 1576, 1721 |
| DraI | TTTAAA | 1 cut(s) | 993 |
| EaeI | YGGCCR | 1 cut(s) | 1828 |
| Eam1104I | CTCTTC | 5 cut(s) | 105, 120, 141, 798, 1101 |
| EarI | CTCTTC | 5 cut(s) | 105, 120, 141, 798, 1101 |
| Ecl136II | GAGCTC | 1 cut(s) | 1502 |
| Eco130I | CCWWGG | 1 cut(s) | 686 |
| Eco24I | GRGCYC | 2 cut(s) | 582, 1504 |
| Eco53kI | GAGCTC | 1 cut(s) | 1502 |
| Eco88I | CYCGRG | 3 cut(s) | 387, 1497, 1640 |
| EcoICRI | GAGCTC | 1 cut(s) | 1502 |
| EcoRI | GAATTC | 1 cut(s) | 1012 |
| EcoT14I | CCWWGG | 1 cut(s) | 686 |
| EcoT22I | ATGCAT | 1 cut(s) | 505 |
| EcoT38I | GRGCYC | 2 cut(s) | 582, 1504 |
| ErhI | CCWWGG | 1 cut(s) | 686 |
| FaeI | CATG | 3 cut(s) | 481, 940, 1592 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1346, 1378 |
| FaqI | GGGAC | 1 cut(s) | 797 |
| FatI | CATG | 3 cut(s) | 477, 936, 1588 |
| FauNDI | CATATG | 1 cut(s) | 643 |
| Fnu4HI | GCNGC | 4 cut(s) | 564, 1297, 1701, 1777 |
| FokI | GGATG | 5 cut(s) | 44, 1088, 1469, 1622, 1850 |
| FriOI | GRGCYC | 2 cut(s) | 582, 1504 |
| Fsp4HI | GCNGC | 4 cut(s) | 564, 1297, 1701, 1777 |
| GluI | GCNGC | 4 cut(s) | 564, 1297, 1701, 1777 |
| GsuI | CTGGAG | 1 cut(s) | 299 |
| HaeIII | GGCC | 2 cut(s) | 809, 1830 |
| HapII | CCGG | 1 cut(s) | 567 |
| HgaI | GACGC | 1 cut(s) | 1664 |
| Hin1II | CATG | 3 cut(s) | 481, 940, 1592 |
| HincII | GTYRAC | 2 cut(s) | 468, 1416 |
| HindII | GTYRAC | 2 cut(s) | 468, 1416 |
| HindIII | AAGCTT | 1 cut(s) | 353 |
| HpaII | CCGG | 1 cut(s) | 567 |
| HphI | GGTGA | 1 cut(s) | 1130 |
| Hpy166II | GTNNAC | 7 cut(s) | 37, 52, 409, 468, 1216, 1416, 1654 |
| Hpy188I | TCNGA | 9 cut(s) | 43, 490, 552, 730, 903, 915, 1011, 1534, 1602 |
| Hpy8I | GTNNAC | 7 cut(s) | 37, 52, 409, 468, 1216, 1416, 1654 |
| HpyAV | CCTTC | 7 cut(s) | 239, 372, 713, 1331, 1369, 1804, 1828 |
| HpyCH4III | ACNGT | 3 cut(s) | 1222, 1764, 1876 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 319, 365, 433, 1700, 1740 |
| Hsp92II | CATG | 3 cut(s) | 481, 940, 1592 |
| Kzo9I | GATC | 5 cut(s) | 628, 837, 1301, 1576, 1721 |
| LguI | GCTCTTC | 2 cut(s) | 105, 141 |
| LmnI | GCTCC | 3 cut(s) | 318, 364, 1820 |
| Lsp1109I | GCAGC | 3 cut(s) | 550, 1308, 1788 |
| LweI | GCATC | 2 cut(s) | 494, 1162 |
| MaeIII | GTNAC | 3 cut(s) | 670, 1249, 1471 |
| MalI | GATC | 5 cut(s) | 630, 839, 1303, 1578, 1723 |
| MboI | GATC | 5 cut(s) | 628, 837, 1301, 1576, 1721 |
| MfeI | CAATTG | 1 cut(s) | 930 |
| MflI | RGATCY | 5 cut(s) | 628, 837, 1301, 1576, 1721 |
| MhlI | GDGCHC | 4 cut(s) | 181, 582, 853, 1504 |
| MlsI | TGGCCA | 1 cut(s) | 1830 |
| MluNI | TGGCCA | 1 cut(s) | 1830 |
| MlyI | GAGTC | 3 cut(s) | 1442, 1502, 1657 |
| Mox20I | TGGCCA | 1 cut(s) | 1830 |
| Mph1103I | ATGCAT | 1 cut(s) | 505 |
| MroXI | GAANNNNTTC | 1 cut(s) | 956 |
| MscI | TGGCCA | 1 cut(s) | 1830 |
| MseI | TTAA | 4 cut(s) | 17, 992, 1541, 1879 |
| Msp20I | TGGCCA | 1 cut(s) | 1830 |
| MspA1I | CMGCKG | 1 cut(s) | 1299 |
| MspI | CCGG | 1 cut(s) | 567 |
| MunI | CAATTG | 1 cut(s) | 930 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 319, 365, 433, 1700, 1740 |
| NdeI | CATATG | 1 cut(s) | 643 |
| NdeII | GATC | 5 cut(s) | 628, 837, 1301, 1576, 1721 |
| NheI | GCTAGC | 1 cut(s) | 1690 |
| NlaIII | CATG | 3 cut(s) | 481, 940, 1592 |
| NlaIV | GGNNCC | 2 cut(s) | 132, 1822 |
| NsiI | ATGCAT | 1 cut(s) | 505 |
| NspI | RCATGY | 1 cut(s) | 481 |
| NspV | TTCGAA | 1 cut(s) | 144 |
| PaeR7I | CTCGAG | 2 cut(s) | 387, 1497 |
| PaqCI | CACCTGC | 2 cut(s) | 547, 1624 |
| PciSI | GCTCTTC | 2 cut(s) | 105, 141 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 172, 1273, 1495 |
| PdmI | GAANNNNTTC | 1 cut(s) | 956 |
| PfeI | GAWTC | 8 cut(s) | 161, 335, 523, 596, 754, 942, 975, 1847 |
| PkrI | GCNGC | 4 cut(s) | 565, 1298, 1702, 1778 |
| PleI | GAGTC | 3 cut(s) | 1441, 1501, 1657 |
| PpsI | GAGTC | 3 cut(s) | 1441, 1501, 1657 |
| PsiI | TTATAA | 1 cut(s) | 1226 |
| Psp124BI | GAGCTC | 1 cut(s) | 1504 |
| PspN4I | GGNNCC | 2 cut(s) | 132, 1822 |
| PstNI | CAGNNNCTG | 1 cut(s) | 338 |
| PsuI | RGATCY | 5 cut(s) | 628, 837, 1301, 1576, 1721 |
| RsaI | GTAC | 1 cut(s) | 1279 |
| RsaNI | GTAC | 1 cut(s) | 1278 |
| SacI | GAGCTC | 1 cut(s) | 1504 |
| SapI | GCTCTTC | 2 cut(s) | 105, 141 |
| SaqAI | TTAA | 4 cut(s) | 17, 992, 1541, 1879 |
| SatI | GCNGC | 4 cut(s) | 564, 1297, 1701, 1777 |
| Sau3AI | GATC | 5 cut(s) | 628, 837, 1301, 1576, 1721 |
| SchI | GAGTC | 3 cut(s) | 1442, 1502, 1657 |
| SduI | GDGCHC | 4 cut(s) | 181, 582, 853, 1504 |
| SfaNI | GCATC | 2 cut(s) | 494, 1162 |
| Sfr274I | CTCGAG | 2 cut(s) | 387, 1497 |
| SfuI | TTCGAA | 1 cut(s) | 144 |
| SlaI | CTCGAG | 2 cut(s) | 387, 1497 |
| SmlI | CTYRAG | 4 cut(s) | 387, 1031, 1497, 1665 |
| SmoI | CTYRAG | 4 cut(s) | 387, 1031, 1497, 1665 |
| SpeI | ACTAGT | 1 cut(s) | 470 |
| SsiI | CCGC | 4 cut(s) | 1299, 1484, 1701, 1734 |
| SstI | GAGCTC | 1 cut(s) | 1504 |
| StyI | CCWWGG | 1 cut(s) | 686 |
| TaaI | ACNGT | 3 cut(s) | 1222, 1764, 1876 |
| TaqII | GACCGA | 1 cut(s) | 1433 |
| TauI | GCSGC | 1 cut(s) | 1703 |
| TfiI | GAWTC | 8 cut(s) | 161, 335, 523, 596, 754, 942, 975, 1847 |
| Tru1I | TTAA | 4 cut(s) | 17, 992, 1541, 1879 |
| Tru9I | TTAA | 4 cut(s) | 17, 992, 1541, 1879 |
| TscAI | CASTG | 4 cut(s) | 465, 589, 598, 853 |
| TseI | GCWGC | 3 cut(s) | 563, 1296, 1776 |
| TspDTI | ATGAA | 4 cut(s) | 411, 666, 910, 1013 |
| TspGWI | ACGGA | 2 cut(s) | 1088, 1297 |
| TspRI | CASTG | 4 cut(s) | 465, 589, 598, 853 |
| XapI | RAATTY | 2 cut(s) | 909, 1012 |
| XbaI | TCTAGA | 1 cut(s) | 1766 |
| XceI | RCATGY | 1 cut(s) | 481 |
| XhoI | CTCGAG | 2 cut(s) | 387, 1497 |
| XmnI | GAANNNNTTC | 1 cut(s) | 956 |
| Zsp2I | ATGCAT | 1 cut(s) | 505 |