Rw2G011520

Pyridine nucleotide-disulfide oxidoreductase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011262
Physical Location & Seq
Forward (+)
11651103 .. 11655426
4324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G011520.1

Sequence Viewer

Length: 1710 bp
ATGTGGCGGAGGAGCTTCAGCAGCGGCGCCGGCGCAGCCGCAAGCGCGTTGAAGGACAAGAAATGGGACGCGCTGGTCATCGGAGGCGGCCACAACGGCCTCACTGCAGCCGCGTACCTCGCACGAGCCGGCCTCTCCGTCGCAGTCCTCGAACGCCGCCACGTCATCGGCGGAGCCGCCGTGACGGAAGAGCTCATTCCAGGATTCAAGTTCTCCCGGTGTAGCTACCTCCAGAGCCTCCTCCGTCCCGCCGTTATCAAGGAATTAGAGCTAGCTCGGCATGGAATGAAGTTACTGAAGAGGAGTCCGTCGTCGTCGTTTACGCCTTGTTTGGACGGACGTTATCTTCTTTTAGGGCCGGAAAAGGACCTTAACCATTCAGAGATTGCTAAATTCTCTAAGCTAGACGCTGATGCTTATCCAAGATATGAGAATCAGCTAGAGAAGTTCTGTCAGTTTATGGATCCTTTGCTGGATTCAGCTCCTCCAGAATCTTCGCAAGGCGCCTCCTCCGCTACTTTTGGGGACCGGTTGAAGGATAAGATGCACAAGTCGATGTTTTGGGCTCAGCTTCTGAGACAGGCTGCTGTCTTAGGCCAGAAAGATATGGTAGACTTTATGGACCTTCTGTTATCCCCGGCTTCAAAAGTTTTGAACAACTGGTTTGAGACTGATGTTCTGAAGGCAACCCTTGCAACAGATGCTGTAATAGGAACTACGGGAAGTGTCCATACACCAGGGAGTGGATATGTTCTGCTACATCATGTGATGGGAGAAACTGACGGCGAGCGTGGAATTTGGTCGTATGTTGAAGGTGGGATGGGTTCAGTATCCTTGGCTATTGGTAATGCTGCTAGGGAAGCTGGGGCTCATATTGTCACAAGTGCAGAGGTTCAGCAAATGTTAATTAATGACTCTGGCAAAGTGGATGGGGTTTTGCTATCTGATGGTTCACGGGTGCACTCTTCAATTGTTTTATCAAATGCAACCCCTTATAAAACATTCAAGGAGTTGGTGCCTGATGATGTTCTTCCGGATGATTTTCTACGTGCAATTAAATACTCAGATTACAGCTCTGCTACTACGAAGATAAATATAGCAGTTGATCAGTTGCCCCAGTTTAAGAGCTGCAAGTTAAATCATCCTCATGCAGGTCCTCAGCATATGGGCACCATTCACATTGGTTCCGAGAGTATGGAAGAGATTCACTTGGCCTGTCAAGATGCTGTTAATGGATTACCATCACAAAGACCAGTTATCGAGATGACAATTCCATCTGTACTGGACAAGACTATATCTCCACCTGGTAAGCATGTGATCAACTTGTTTATTCAATACACACCGTATAGTCCATCAGATGGACACTGGGGAGATCCTGTTTACAGAGAATCATTTGCAAAAAAGTGTTTCACCTTAATTGATGAATATGCCCCTGGGTTCAGTTCATCAGTAATTGGTTACGACATGTTGACTCCACCAGACCTTGAAAGGGAAATTGGTTTGACAGGAGGGAATATCTTCCATGGTGCTATGGGATTGGATTCACTCTTCCTCATGCGACCTGTAAAAGGATGGTCAAATTATAGAACACCACTTCCGGGTCTCTATTTGTGCGGTAGCGGGGCCCACCCAGGGGGCGGTGTGATGGGGGCTCCCGGGCGTAATGCTGCTCGTGTGGCTTTGGAAGATGTAAACAAGCCATTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase DAO NAD_binding_8

Protein Analysis

569

Amino Acids

61.54

Weight (kDa)

6.44

Isoelectric Point (pI)

38.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thi4 PF01946 21 - 60 5.1e-06 Thi4 family
DAO PF01266 23 - 59 1.9e-07 FAD dependent oxidoreductase
FAD_oxidored PF12831 23 - 63 2.7e-07 FAD dependent oxidoreductase
NAD_binding_8 PF13450 26 - 73 4.9e-11 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 33 - 370 1.6e-12 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 996
AasI GACNNNNNNGTC 1 cut(s) 74
Acc36I ACCTGC 1 cut(s) 1142
AccB1I GGYRCC 4 cut(s) 26, 503, 1015, 1169
AccB7I CCANNNNNTGG 2 cut(s) 743, 1358
AccI GTMKAC 1 cut(s) 612
AccII CGCG 3 cut(s) 47, 71, 113
AccIII TCCGGA 1 cut(s) 1033
AclWI GGATC 3 cut(s) 458, 471, 1367
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 2 cut(s) 392, 795
AcuI CTGAAG 2 cut(s) 317, 701
AcyI GRCGYC 2 cut(s) 27, 504
AfaI GTAC 2 cut(s) 116, 1281
AflIII ACRYGT 1 cut(s) 1464
AgeI ACCGGT 1 cut(s) 528
AjiI CACGTC 1 cut(s) 163
AjnI CCWGG 5 cut(s) 199, 736, 1303, 1432, 1630
AjuI GAANNNNNNNTTGG 2 cut(s) 1479, 1511
AloI GAACNNNNNNTCC 2 cut(s) 1579, 1611
Alw21I GWGCWC 2 cut(s) 195, 963
Alw26I GTCTC 3 cut(s) 571, 662, 1607
Alw44I GTGCAC 1 cut(s) 959
AlwI GGATC 3 cut(s) 458, 471, 1367
AlwNI CAGNNNCTG 2 cut(s) 574, 704
Ama87I CYCGRG 1 cut(s) 1655
Aor13HI TCCGGA 1 cut(s) 1033
AoxI GGCC 7 cut(s) 88, 97, 130, 356, 595, 1212, 1623
ApaI GGGCCC 1 cut(s) 1627
ApaLI GTGCAC 1 cut(s) 959
ApeKI GCWGC 7 cut(s) 21, 35, 107, 584, 851, 1128, 1667
ApoI RAATTY 2 cut(s) 392, 795
AseI ATTAAT 1 cut(s) 909
AsiGI ACCGGT 1 cut(s) 528
Asp700I GAANNNNTTC 2 cut(s) 1203, 1517
AspLEI GCGC 5 cut(s) 29, 35, 47, 73, 506
AspS9I GGNCC 7 cut(s) 356, 367, 526, 622, 1154, 1623, 1624
AsuC2I CCSGG 5 cut(s) 217, 638, 1599, 1656, 1657
AsuHPI GGTGA 1 cut(s) 1402
AsuNHI GCTAGC 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 1655
AvaII GGWCC 4 cut(s) 367, 526, 622, 1154
BaeGI GKGCMC 3 cut(s) 963, 1172, 1627
BamHI GGATCC 1 cut(s) 463
BanI GGYRCC 4 cut(s) 26, 503, 1015, 1169
BanII GRGCYC 5 cut(s) 195, 568, 871, 1627, 1654
BarI GAAGNNNNNNTAC 2 cut(s) 715, 747
BauI CACGAG 2 cut(s) 123, 1671
Bbv12I GWGCWC 2 cut(s) 195, 963
BbvCI CCTCAGC 1 cut(s) 1158
BbvI GCAGC 7 cut(s) 33, 47, 119, 571, 838, 1115, 1654
BceAI ACGGC 4 cut(s) 112, 164, 236, 799
BciT130I CCWGG 5 cut(s) 201, 738, 1305, 1434, 1632
BciVI GTATCC 1 cut(s) 841
BclI TGATCA 2 cut(s) 1105, 1317
BcnI CCSGG 5 cut(s) 217, 638, 1599, 1656, 1657
BcoDI GTCTC 3 cut(s) 571, 662, 1607
BfaI CTAG 4 cut(s) 272, 404, 440, 855
BfmI CTRYAG 1 cut(s) 105
BfoI RGCGCY 2 cut(s) 30, 507
BfuAI ACCTGC 1 cut(s) 1142
BfuI GTATCC 1 cut(s) 841
BglI GCCNNNNNGGC 1 cut(s) 96
BlpI GCTNAGC 1 cut(s) 567
Bme18I GGWCC 4 cut(s) 367, 526, 622, 1154
BmeT110I CYCGRG 1 cut(s) 1655
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 7 cut(s) 356, 367, 526, 622, 1154, 1623, 1624
BmrI ACTGGG 2 cut(s) 1111, 1375
BmsI GCATC 4 cut(s) 403, 534, 691, 1213
BmtI GCTAGC 1 cut(s) 275
BmuI ACTGGG 2 cut(s) 1111, 1375
BplI GAGNNNNNCTC 2 cut(s) 117, 149
BpmI CTGGAG 2 cut(s) 215, 471
Bpu10I CCTNAGC 1 cut(s) 1158
Bpu1102I GCTNAGC 1 cut(s) 567
BpuMI CCSGG 5 cut(s) 217, 638, 1599, 1656, 1657
BsaAI YACGTR 1 cut(s) 1049
BsaBI GATNNNNATC 2 cut(s) 417, 1240
BsaHI GRCGYC 2 cut(s) 27, 504
BsaI GGTCTC 1 cut(s) 1607
BsaJI CCNNGG 9 cut(s) 636, 737, 834, 1432, 1433, 1522, 1630, 1631, 1655
BsaWI WCCGGW 2 cut(s) 528, 1033
BsaXI ACNNNNNCTCC 6 cut(s) 165, 195, 1282, 1312, 1362, 1392
Bse118I RCCGGY 3 cut(s) 29, 128, 528
Bse1I ACTGG 5 cut(s) 665, 1117, 1253, 1287, 1370
Bse8I GATNNNNATC 2 cut(s) 417, 1240
BseAI TCCGGA 1 cut(s) 1033
BseBI CCWGG 5 cut(s) 201, 738, 1305, 1434, 1632
BseDI CCNNGG 9 cut(s) 636, 737, 834, 1432, 1433, 1522, 1630, 1631, 1655
BseGI GGATG 5 cut(s) 825, 934, 1042, 1141, 1577
BseJI GATNNNNATC 2 cut(s) 417, 1240
BseMII CTCAG 4 cut(s) 566, 581, 1077, 1172
BseNI ACTGG 5 cut(s) 665, 1117, 1253, 1287, 1370
BseRI GAGGAG 5 cut(s) 25, 230, 316, 474, 499
BseSI GKGCMC 3 cut(s) 963, 1172, 1627
BseXI GCAGC 7 cut(s) 33, 47, 119, 571, 838, 1115, 1654
BseYI CCCAGC 1 cut(s) 863
BsgI GTGCAG 1 cut(s) 906
Bsh1236I CGCG 3 cut(s) 47, 71, 113
BshFI GGCC 7 cut(s) 90, 99, 132, 358, 597, 1214, 1625
BshNI GGYRCC 4 cut(s) 26, 503, 1015, 1169
BshTI ACCGGT 1 cut(s) 528
BsiHKAI GWGCWC 2 cut(s) 195, 963
BsiHKCI CYCGRG 1 cut(s) 1655
BsiSI CCGG 9 cut(s) 30, 129, 217, 359, 529, 638, 1034, 1598, 1656
BslFI GGGAC 3 cut(s) 80, 231, 539
BsmAI GTCTC 3 cut(s) 571, 662, 1607
BsmFI GGGAC 3 cut(s) 80, 231, 539
BsnI GGCC 7 cut(s) 90, 99, 132, 358, 597, 1214, 1625
Bso31I GGTCTC 1 cut(s) 1607
BsoBI CYCGRG 1 cut(s) 1655
Bsp120I GGGCCC 1 cut(s) 1623
Bsp1286I GDGCHC 7 cut(s) 195, 568, 871, 963, 1172, 1627, 1654
Bsp13I TCCGGA 1 cut(s) 1033
Bsp143I GATC 4 cut(s) 463, 1105, 1317, 1372
Bsp1720I GCTNAGC 1 cut(s) 567
Bsp19I CCATGG 1 cut(s) 1522
BspANI GGCC 7 cut(s) 90, 99, 132, 358, 597, 1214, 1625
BspCNI CTCAG 4 cut(s) 567, 580, 1076, 1171
BspEI TCCGGA 1 cut(s) 1033
BspFNI CGCG 3 cut(s) 47, 71, 113
BspMAI CTGCAG 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 1142
BspOI GCTAGC 1 cut(s) 275
BspPI GGATC 3 cut(s) 458, 471, 1367
BspQI GCTCTTC 1 cut(s) 183
BspT107I GGYRCC 4 cut(s) 26, 503, 1015, 1169
BspTNI GGTCTC 1 cut(s) 1607
BsrFI RCCGGY 3 cut(s) 29, 128, 528
BsrI ACTGG 5 cut(s) 665, 1117, 1253, 1287, 1370
BssAI RCCGGY 3 cut(s) 29, 128, 528
BssECI CCNNGG 9 cut(s) 636, 737, 834, 1432, 1433, 1522, 1630, 1631, 1655
BssMI GATC 4 cut(s) 463, 1105, 1317, 1372
BssNI GRCGYC 2 cut(s) 27, 504
BssSI CACGAG 2 cut(s) 123, 1671
BssT1I CCWWGG 2 cut(s) 834, 1522
Bst2BI CACGAG 2 cut(s) 123, 1671
Bst2UI CCWGG 5 cut(s) 201, 738, 1305, 1434, 1632
Bst4CI ACNGT 1 cut(s) 1344
Bst6I CTCTTC 5 cut(s) 183, 293, 970, 1194, 1553
BstACI GRCGYC 2 cut(s) 27, 504
BstAPI GCANNNNNTGC 2 cut(s) 692, 701
BstBAI YACGTR 1 cut(s) 1049
BstC8I GCNNGC 5 cut(s) 31, 43, 130, 273, 788
BstDEI CTNAG 6 cut(s) 399, 567, 575, 592, 1063, 1158
BstDSI CCRYGG 1 cut(s) 1522
BstENI CCTNNNNNAGG 2 cut(s) 1149, 1566
BstF5I GGATG 5 cut(s) 825, 934, 1042, 1141, 1577
BstFNI CGCG 3 cut(s) 47, 71, 113
BstH2I RGCGCY 2 cut(s) 30, 507
BstHHI GCGC 5 cut(s) 29, 35, 47, 73, 506
BstKTI GATC 4 cut(s) 466, 1108, 1320, 1375
BstMAI GTCTC 3 cut(s) 571, 662, 1607
BstMBI GATC 4 cut(s) 463, 1105, 1317, 1372
BstNI CCWGG 5 cut(s) 201, 738, 1305, 1434, 1632
BstNSI RCATGY 2 cut(s) 1316, 1468
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 3 cut(s) 963, 1172, 1627
BstUI CGCG 3 cut(s) 47, 71, 113
BstV1I GCAGC 7 cut(s) 33, 47, 119, 571, 838, 1115, 1654
BstX2I RGATCY 2 cut(s) 463, 1372
BstYI RGATCY 2 cut(s) 463, 1372
BsuI GTATCC 1 cut(s) 841
BsuRI GGCC 7 cut(s) 90, 99, 132, 358, 597, 1214, 1625
BtgI CCRYGG 1 cut(s) 1522
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 5 cut(s) 825, 934, 1042, 1141, 1577
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 102, 1363
BveI ACCTGC 1 cut(s) 1142
Cac8I GCNNGC 5 cut(s) 31, 43, 130, 273, 788
CaiI CAGNNNCTG 2 cut(s) 574, 704
CfoI GCGC 5 cut(s) 29, 35, 47, 73, 506
Cfr10I RCCGGY 3 cut(s) 29, 128, 528
Cfr13I GGNCC 7 cut(s) 356, 367, 526, 622, 1154, 1623, 1624
Cfr9I CCCGGG 1 cut(s) 1655
CseI GACGC 2 cut(s) 77, 416
CsiI ACCWGGT 1 cut(s) 1303
Csp6I GTAC 2 cut(s) 115, 1280
CspAI ACCGGT 1 cut(s) 528
CviAII CATG 7 cut(s) 281, 764, 1148, 1313, 1465, 1523, 1555
CviQI GTAC 2 cut(s) 115, 1280
DdeI CTNAG 6 cut(s) 399, 567, 575, 592, 1063, 1158
DinI GGCGCC 2 cut(s) 28, 505
DpnI GATC 4 cut(s) 465, 1107, 1319, 1374
DpnII GATC 4 cut(s) 463, 1105, 1317, 1372
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 5 cut(s) 183, 293, 970, 1194, 1553
EarI CTCTTC 5 cut(s) 183, 293, 970, 1194, 1553
EciI GGCGGA 2 cut(s) 22, 186
Ecl136II GAGCTC 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 834, 1522
Eco24I GRGCYC 5 cut(s) 195, 568, 871, 1627, 1654
Eco31I GGTCTC 1 cut(s) 1607
Eco47I GGWCC 4 cut(s) 367, 526, 622, 1154
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 2 cut(s) 317, 701
Eco88I CYCGRG 1 cut(s) 1655
EcoICRI GAGCTC 1 cut(s) 193
EcoNI CCTNNNNNAGG 2 cut(s) 1149, 1566
EcoO109I RGGNCCY 3 cut(s) 367, 1154, 1623
EcoRII CCWGG 5 cut(s) 199, 736, 1303, 1432, 1630
EcoT14I CCWWGG 2 cut(s) 834, 1522
EcoT38I GRGCYC 5 cut(s) 195, 568, 871, 1627, 1654
EgeI GGCGCC 2 cut(s) 28, 505
EheI GGCGCC 2 cut(s) 28, 505
ErhI CCWWGG 2 cut(s) 834, 1522
FaeI CATG 7 cut(s) 284, 767, 1151, 1316, 1468, 1526, 1558
FaqI GGGAC 3 cut(s) 80, 231, 539
FatI CATG 7 cut(s) 280, 763, 1147, 1312, 1464, 1522, 1554
FauI CCCGC 2 cut(s) 256, 1613
FauNDI CATATG 1 cut(s) 1164
FbaI TGATCA 2 cut(s) 1105, 1317
FblI GTMKAC 1 cut(s) 612
FokI GGATG 5 cut(s) 832, 941, 1049, 1128, 1584
FriOI GRGCYC 5 cut(s) 195, 568, 871, 1627, 1654
FspBI CTAG 4 cut(s) 272, 404, 440, 855
GlaI GCGC 5 cut(s) 28, 34, 46, 72, 505
GsaI CCCAGC 1 cut(s) 867
GsuI CTGGAG 2 cut(s) 215, 471
HaeII RGCGCY 2 cut(s) 30, 507
HaeIII GGCC 7 cut(s) 90, 99, 132, 358, 597, 1214, 1625
HapII CCGG 9 cut(s) 30, 129, 217, 359, 529, 638, 1034, 1598, 1656
HgaI GACGC 2 cut(s) 77, 416
HhaI GCGC 5 cut(s) 29, 35, 47, 73, 506
Hin1I GRCGYC 2 cut(s) 27, 504
Hin1II CATG 7 cut(s) 284, 767, 1151, 1316, 1468, 1526, 1558
Hin6I GCGC 5 cut(s) 27, 33, 45, 71, 504
HinP1I GCGC 5 cut(s) 27, 33, 45, 71, 504
HincII GTYRAC 1 cut(s) 1470
HindII GTYRAC 1 cut(s) 1470
HpaII CCGG 9 cut(s) 30, 129, 217, 359, 529, 638, 1034, 1598, 1656
HphI GGTGA 1 cut(s) 1402
Hpy166II GTNNAC 7 cut(s) 321, 613, 953, 961, 1381, 1470, 1693
Hpy188I TCNGA 8 cut(s) 83, 382, 576, 681, 946, 1066, 1189, 1357
Hpy188III TCNNGA 5 cut(s) 232, 488, 1034, 1220, 1261
Hpy8I GTNNAC 7 cut(s) 321, 613, 953, 961, 1381, 1470, 1693
Hpy99I CGWCG 4 cut(s) 143, 313, 316, 319
HpyAV CCTTC 5 cut(s) 46, 529, 635, 676, 806
HpyCH4III ACNGT 1 cut(s) 1344
HpyCH4IV ACGT 3 cut(s) 162, 340, 1048
HpyF3I CTNAG 6 cut(s) 399, 567, 575, 592, 1063, 1158
HpySE526I ACGT 3 cut(s) 162, 340, 1048
Hsp92I GRCGYC 2 cut(s) 27, 504
Hsp92II CATG 7 cut(s) 284, 767, 1151, 1316, 1468, 1526, 1558
HspAI GCGC 5 cut(s) 27, 33, 45, 71, 504
KasI GGCGCC 2 cut(s) 26, 503
Kpn2I TCCGGA 1 cut(s) 1033
KroI GCCGGC 2 cut(s) 29, 128
KroNI GCCGGC 2 cut(s) 31, 130
Ksp22I TGATCA 2 cut(s) 1105, 1317
Kzo9I GATC 4 cut(s) 463, 1105, 1317, 1372
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 4 cut(s) 12, 173, 487, 1657
Lsp1109I GCAGC 7 cut(s) 33, 47, 119, 571, 838, 1115, 1654
LweI GCATC 4 cut(s) 403, 534, 691, 1213
MabI ACCWGGT 1 cut(s) 1303
MaeI CTAG 4 cut(s) 272, 404, 440, 855
MaeII ACGT 3 cut(s) 162, 340, 1048
MaeIII GTNAC 4 cut(s) 181, 291, 877, 1457
MalI GATC 4 cut(s) 465, 1107, 1319, 1374
MboI GATC 4 cut(s) 463, 1105, 1317, 1372
MfeI CAATTG 1 cut(s) 969
MflI RGATCY 2 cut(s) 463, 1372
MhlI GDGCHC 7 cut(s) 195, 568, 871, 963, 1172, 1627, 1654
Mly113I GGCGCC 2 cut(s) 27, 504
MlyI GAGTC 3 cut(s) 313, 908, 1465
MreI CGCCGGCG 1 cut(s) 29
MroI TCCGGA 1 cut(s) 1033
MroNI GCCGGC 2 cut(s) 29, 128
MroXI GAANNNNTTC 2 cut(s) 1203, 1517
MseI TTAA 8 cut(s) 372, 905, 909, 1056, 1122, 1136, 1230, 1415
MslI CAYNNNNRTG 2 cut(s) 1146, 1705
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 9 cut(s) 30, 129, 217, 359, 529, 638, 1034, 1598, 1656
MunI CAATTG 1 cut(s) 969
MvaI CCWGG 5 cut(s) 201, 738, 1305, 1434, 1632
MvnI CGCG 3 cut(s) 47, 71, 113
NaeI GCCGGC 2 cut(s) 31, 130
NarI GGCGCC 2 cut(s) 27, 504
NciI CCSGG 5 cut(s) 217, 638, 1599, 1656, 1657
NcoI CCATGG 1 cut(s) 1522
NdeI CATATG 1 cut(s) 1164
NdeII GATC 4 cut(s) 463, 1105, 1317, 1372
NgoMIV GCCGGC 2 cut(s) 29, 128
NheI GCTAGC 1 cut(s) 271
NlaIII CATG 7 cut(s) 284, 767, 1151, 1316, 1468, 1526, 1558
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 2 cut(s) 181, 877
NspI RCATGY 2 cut(s) 1316, 1468
PacI TTAATTAA 1 cut(s) 909
PasI CCCWGGG 2 cut(s) 1433, 1631
PciI ACATGT 1 cut(s) 1464
PciSI GCTCTTC 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdiI GCCGGC 2 cut(s) 31, 130
PdmI GAANNNNTTC 2 cut(s) 1203, 1517
PfeI GAWTC 7 cut(s) 204, 433, 476, 491, 1204, 1388, 1541
PflMI CCANNNNNTGG 2 cut(s) 743, 1358
PfoI TCCNGGA 1 cut(s) 199
PinAI ACCGGT 1 cut(s) 528
PleI GAGTC 3 cut(s) 312, 908, 1465
PluTI GGCGCC 2 cut(s) 30, 507
PpsI GAGTC 3 cut(s) 312, 908, 1465
Ppu21I YACGTR 1 cut(s) 1049
PpuMI RGGWCCY 2 cut(s) 367, 1154
PscI ACATGT 1 cut(s) 1464
PshBI ATTAAT 1 cut(s) 909
PsiI TTATAA 1 cut(s) 996
Psp124BI GAGCTC 1 cut(s) 195
Psp5II RGGWCCY 2 cut(s) 367, 1154
Psp6I CCWGG 5 cut(s) 199, 736, 1303, 1432, 1630
PspFI CCCAGC 1 cut(s) 863
PspGI CCWGG 5 cut(s) 199, 736, 1303, 1432, 1630
PspOMI GGGCCC 1 cut(s) 1623
PspPI GGNCC 7 cut(s) 356, 367, 526, 622, 1154, 1623, 1624
PspPPI RGGWCCY 2 cut(s) 367, 1154
PstI CTGCAG 1 cut(s) 109
PstNI CAGNNNCTG 2 cut(s) 574, 704
PsuI RGATCY 2 cut(s) 463, 1372
RsaI GTAC 2 cut(s) 116, 1281
RsaNI GTAC 2 cut(s) 115, 1280
RseI CAYNNNNRTG 2 cut(s) 1146, 1705
SacI GAGCTC 1 cut(s) 195
SapI GCTCTTC 1 cut(s) 183
SaqAI TTAA 8 cut(s) 372, 905, 909, 1056, 1122, 1136, 1230, 1415
Sau3AI GATC 4 cut(s) 463, 1105, 1317, 1372
Sau96I GGNCC 7 cut(s) 356, 367, 526, 622, 1154, 1623, 1624
SchI GAGTC 3 cut(s) 313, 908, 1465
SduI GDGCHC 7 cut(s) 195, 568, 871, 963, 1172, 1627, 1654
SexAI ACCWGGT 1 cut(s) 1303
SfaNI GCATC 4 cut(s) 403, 534, 691, 1213
SfcI CTRYAG 1 cut(s) 105
SfiI GGCCNNNNNGGCC 1 cut(s) 96
SfoI GGCGCC 2 cut(s) 28, 505
SgrAI CRCCGGYG 1 cut(s) 29
SinI GGWCC 4 cut(s) 367, 526, 622, 1154
SmaI CCCGGG 1 cut(s) 1657
SmiMI CAYNNNNRTG 2 cut(s) 1146, 1705
SspDI GGCGCC 2 cut(s) 26, 503
SspMI CTAG 4 cut(s) 272, 404, 440, 855
SstI GAGCTC 1 cut(s) 195
StyI CCWWGG 2 cut(s) 834, 1522
TaaI ACNGT 1 cut(s) 1344
TaiI ACGT 3 cut(s) 165, 343, 1051
TaqI TCGA 3 cut(s) 150, 554, 1260
TatI WGTACW 1 cut(s) 1279
TauI GCSGC 6 cut(s) 27, 41, 90, 113, 159, 179
TfiI GAWTC 7 cut(s) 204, 433, 476, 491, 1204, 1388, 1541
Tru1I TTAA 8 cut(s) 372, 905, 909, 1056, 1122, 1136, 1230, 1415
Tru9I TTAA 8 cut(s) 372, 905, 909, 1056, 1122, 1136, 1230, 1415
TscAI CASTG 2 cut(s) 109, 1370
TseFI GTSAC 2 cut(s) 181, 877
TseI GCWGC 7 cut(s) 21, 35, 107, 584, 851, 1128, 1667
Tsp45I GTSAC 2 cut(s) 181, 877
TspDTI ATGAA 3 cut(s) 302, 1434, 1437
TspGWI ACGGA 5 cut(s) 127, 200, 233, 297, 351
TspMI CCCGGG 1 cut(s) 1655
TspRI CASTG 2 cut(s) 109, 1370
Van91I CCANNNNNTGG 2 cut(s) 743, 1358
VneI GTGCAC 1 cut(s) 959
VpaK11BI GGWCC 4 cut(s) 367, 526, 622, 1154
VspI ATTAAT 1 cut(s) 909
XagI CCTNNNNNAGG 2 cut(s) 1149, 1566
XapI RAATTY 2 cut(s) 392, 795
XceI RCATGY 2 cut(s) 1316, 1468
XmaI CCCGGG 1 cut(s) 1655
XmiI GTMKAC 1 cut(s) 612
XmnI GAANNNNTTC 2 cut(s) 1203, 1517
XspI CTAG 4 cut(s) 272, 404, 440, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.