Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0016245

Physical Location & Seq

Genomic Coordinates Forward (+)

29737903 .. 29743122

Gene Structure 5220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G021430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGGGTGTATTCAGAGCAAGACCAACTCCCCAACTCATGGACCTCATGGCCTTGACAAGTTGAAAGTTGATCATGGGTATGTCAAGGGAGGTGGGGTAGGGAAACCCATTGCCCTGAAACCCCCGGGAAAGGAGCCGGTGAGGGTTAATGCCGAGGTTAAGGCTGATAGTGGAGGAGGAGGAGGAGGTGGGAAGGGTGTGGTTAGTAGAGAGACAGAGAGAGGCAATGTTTCAGGAAGGCTTACAGTGACGCAGAATGGAGGAGATGATGATGAAATTGTGGGTGGCTGGCCAAAGTGGCTTGTTGATAATGTACCTCAAGATGTTTTGGATGGCTTGGTTCCGAAGAGTGCTGATTCGTATGACAAGCTTGCTAAGGTAGGCCAAGGAACCTACAGCAATGTGTACAAAGCTCGTGATAGAGACACCAAAAAGATTGTTGCTTTGAAAAAGGTCCGGTTTGACACATCAGAGCCAGAGAGTATCAAGTTTATGGCGAGGGAGATAATGATATTACGGAGGCTAGATCATCCCAATGTCATCAAGCTTGAAGGACTAGCCACGTCAAGGATGCAATATAGTCTATATTTGGTCCTTGAATTCATGCAATATGACTTGACTAAAATAATCTCACGTCCTGAAGAGAGGCTCACTGAACCACAGGTAAAGTGCTATATGCAGCAACTGCTTTCTGGTCTCCAGCACTGCCATGAGAAAGGAATTCTACACAGAGACATTAAACCTTCAAACTTGCTAATAGACAAGAATGGGATGCTCAAAATTGCAGATTTTGGGCTAGCAAACTTCTTCCCTCCCAAACAAAAACGTCCTCTTACGAGCCGAGTTGTGACACTCTGGTATAGAGCCCCAGAGCTCTTGTTAGGCTCTACAGATTACGGAGTTGGTATTGATCTTTGGAGTGCAGGATGTCTACTGGGAGAAATGTTTGTAGGAAGGCCAATTATGCCTGGGAGGACTGAGGTTGAGCAACTTCATAGAATCTTCAAGCTTTGTGGTTCCCCCTCAGATGATTACTGGAAGAAAATGAAGTTACCAACAAGCTTCCGACCCCCACATCATTACAAACCTAGTTTTGAAGAATTCTTCAGGGACTTCTCGATGCCATCATTTGGTCTGTTGATCACTCTTCTTGCTCTTGACCCGACATCTCGTGGCAGTGCGGCTTCTGGTCTCCAGAGTGGATTCTTTAGTTCAAGTCCATTGGCGTGTGACCTTTCAGCTCTACCAGTGCTGTATAAAGAGGAGGATGATCCTGCTCAAAGCAAGGATCGGAAGAAGTACGCTATTAAATTACTACCAACAATCTACTTTCATTATTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

448

Amino Acids

49.89

Weight (kDa)

9.07

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	121 - 403	8.1e-67	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	125 - 332	2.5e-33	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	198 - 284	3.6e-06	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016245)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23160
malus_domestica	MD01G1014800.v1.1 MD15G1336200.v1.1
prunus_persica	Prupe.6G167000_v2.0.a1 Prupe.6G167000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0117881
rosa_laevigata	RLG00000018382
rosa_multiflora	Rmu_sc0004968.1_g000006
rosa_roxburghii	Rroxscaffold_2G00126130
rosa_rugosa	Rorug02G0214800
rosa_samantha	Rh2AG271000 Rh2BG282600 Rh2DG278900 Rh2DG296800
rosa_wichuraiana	Rw2G021430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	38, 1130
AccI	GTMKAC	1 cut(s)	931
AciI	CCGC	1 cut(s)	1181
AclWI	GGATC	2 cut(s)	1265, 1296
AcoI	YGGCCR	1 cut(s)	290
AcsI	RAATTY	3 cut(s)	599, 720, 1100
AcuI	CTGAAG	2 cut(s)	660, 1090
AfaI	GTAC	3 cut(s)	315, 407, 1301
AfiI	CCNNNNNNNGG	4 cut(s)	38, 130, 567, 1130
AgsI	TTSAA	8 cut(s)	64, 448, 551, 599, 747, 1006, 1097, 1215
AjiI	CACGTC	2 cut(s)	564, 635
AjnI	CCWGG	1 cut(s)	967
AluBI	AGCT	7 cut(s)	370, 413, 547, 874, 1009, 1062, 1241
AluI	AGCT	7 cut(s)	370, 413, 547, 874, 1009, 1062, 1241
Alw21I	GWGCWC	1 cut(s)	876
Alw26I	GTCTC	5 cut(s)	206, 417, 701, 726, 1196
AlwI	GGATC	2 cut(s)	1265, 1296
AlwNI	CAGNNNCTG	1 cut(s)	685
Ama87I	CYCGRG	1 cut(s)	124
AoxI	GGCC	4 cut(s)	49, 290, 382, 956
ApeKI	GCWGC	1 cut(s)	679
ApoI	RAATTY	3 cut(s)	599, 720, 1100
AspS9I	GGNCC	3 cut(s)	41, 454, 592
AsuC2I	CCSGG	2 cut(s)	125, 126
AsuHPI	GGTGA	1 cut(s)	151
AsuNHI	GCTAGC	1 cut(s)	796
AvaI	CYCGRG	1 cut(s)	124
AvaII	GGWCC	3 cut(s)	41, 454, 592
BalI	TGGCCA	1 cut(s)	292
BanII	GRGCYC	2 cut(s)	868, 876
BauI	CACGAG	2 cut(s)	414, 1170
Bbv12I	GWGCWC	1 cut(s)	876
BbvI	GCAGC	1 cut(s)	691
BccI	CCATC	2 cut(s)	326, 1132
BciT130I	CCWGG	1 cut(s)	969
BclI	TGATCA	2 cut(s)	70, 1140
BcnI	CCSGG	2 cut(s)	125, 126
BcoDI	GTCTC	5 cut(s)	206, 417, 701, 726, 1196
BfaI	CTAG	4 cut(s)	524, 557, 797, 1089
BfmI	CTRYAG	2 cut(s)	394, 888
BglI	GCCNNNNNGGC	1 cut(s)	298
BisI	GCNGC	2 cut(s)	680, 1182
BlsI	GCNGC	2 cut(s)	681, 1183
Bme1390I	CCNGG	3 cut(s)	125, 126, 969
Bme18I	GGWCC	3 cut(s)	41, 454, 592
BmeT110I	CYCGRG	1 cut(s)	124
BmgBI	CACGTC	2 cut(s)	564, 635
BmgT120I	GGNCC	3 cut(s)	41, 454, 592
BmiI	GGNNCC	4 cut(s)	135, 342, 391, 1018
BmrFI	CCNGG	3 cut(s)	125, 126, 969
BmrI	ACTGGG	1 cut(s)	944
BmsI	GCATC	3 cut(s)	561, 762, 1110
BmtI	GCTAGC	1 cut(s)	800
BmuI	ACTGGG	1 cut(s)	944
BpmI	CTGGAG	2 cut(s)	683, 1178
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	303
BpuMI	CCSGG	2 cut(s)	125, 126
BsaI	GGTCTC	2 cut(s)	701, 1196
BsaJI	CCNNGG	5 cut(s)	123, 124, 153, 385, 968
BsaWI	WCCGGW	1 cut(s)	456
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 130, 567, 1130
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	3 cut(s)	939, 1040, 1247
Bse3DI	GCAATG	3 cut(s)	108, 232, 406
BseBI	CCWGG	1 cut(s)	969
BseDI	CCNNGG	5 cut(s)	123, 124, 153, 385, 968
BseGI	GGATG	6 cut(s)	337, 529, 576, 777, 932, 1273
BseLI	CCNNNNNNNGG	4 cut(s)	38, 130, 567, 1130
BseMI	GCAATG	3 cut(s)	108, 232, 406
BseMII	CTCAG	2 cut(s)	969, 1038
BseNI	ACTGG	3 cut(s)	939, 1040, 1247
BseRI	GAGGAG	6 cut(s)	189, 192, 195, 198, 276, 1277
BseXI	GCAGC	1 cut(s)	691
BsgI	GTGCAG	1 cut(s)	942
BshFI	GGCC	4 cut(s)	51, 292, 384, 958
BsiHKAI	GWGCWC	1 cut(s)	876
BsiHKCI	CYCGRG	1 cut(s)	124
BsiSI	CCGG	3 cut(s)	125, 137, 457
BslFI	GGGAC	1 cut(s)	1124
BslI	CCNNNNNNNGG	4 cut(s)	38, 130, 567, 1130
BsmAI	GTCTC	5 cut(s)	206, 417, 701, 726, 1196
BsmFI	GGGAC	1 cut(s)	1124
BsnI	GGCC	4 cut(s)	51, 292, 384, 958
Bso31I	GGTCTC	2 cut(s)	701, 1196
BsoBI	CYCGRG	1 cut(s)	124
Bsp1286I	GDGCHC	2 cut(s)	868, 876
Bsp1407I	TGTACA	1 cut(s)	405
Bsp143I	GATC	6 cut(s)	70, 526, 910, 1140, 1270, 1288
BspACI	CCGC	1 cut(s)	1181
BspANI	GGCC	4 cut(s)	51, 292, 384, 958
BspCNI	CTCAG	2 cut(s)	970, 1037
BspLI	GGNNCC	4 cut(s)	135, 342, 391, 1018
BspOI	GCTAGC	1 cut(s)	800
BspPI	GGATC	2 cut(s)	1265, 1296
BspTNI	GGTCTC	2 cut(s)	701, 1196
BsrDI	GCAATG	3 cut(s)	108, 232, 406
BsrFI	RCCGGY	1 cut(s)	136
BsrGI	TGTACA	1 cut(s)	405
BsrI	ACTGG	3 cut(s)	939, 1040, 1247
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	5 cut(s)	123, 124, 153, 385, 968
BssMI	GATC	6 cut(s)	70, 526, 910, 1140, 1270, 1288
BssSI	CACGAG	2 cut(s)	414, 1170
BssT1I	CCWWGG	1 cut(s)	385
Bst2BI	CACGAG	2 cut(s)	414, 1170
Bst2UI	CCWGG	1 cut(s)	969
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	3 cut(s)	341, 636, 1152
BstAPI	GCANNNNNTGC	1 cut(s)	685
BstAUI	TGTACA	1 cut(s)	405
BstC8I	GCNNGC	3 cut(s)	290, 372, 798
BstDEI	CTNAG	3 cut(s)	375, 978, 1024
BstF5I	GGATG	6 cut(s)	337, 529, 576, 777, 932, 1273
BstKTI	GATC	6 cut(s)	73, 529, 913, 1143, 1273, 1291
BstMAI	GTCTC	5 cut(s)	206, 417, 701, 726, 1196
BstMBI	GATC	6 cut(s)	70, 526, 910, 1140, 1270, 1288
BstMWI	GCNNNNNNNGC	3 cut(s)	298, 685, 964
BstNI	CCWGG	1 cut(s)	969
BstSCI	CCNGG	3 cut(s)	123, 124, 967
BstSFI	CTRYAG	2 cut(s)	394, 888
BstV1I	GCAGC	1 cut(s)	691
BsuRI	GGCC	4 cut(s)	51, 292, 384, 958
BtrI	CACGTC	2 cut(s)	564, 635
BtsCI	GGATG	6 cut(s)	337, 529, 576, 777, 932, 1273
BtsI	GCAGTG	2 cut(s)	703, 1183
BtsIMutI	CAGTG	5 cut(s)	252, 651, 703, 1183, 1254
Cac8I	GCNNGC	3 cut(s)	290, 372, 798
CaiI	CAGNNNCTG	1 cut(s)	685
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	3 cut(s)	41, 454, 592
Cfr9I	CCCGGG	1 cut(s)	124
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	3 cut(s)	314, 406, 1300
CspCI	CAANNNNNGTGG	4 cut(s)	73, 108, 994, 1029
CviAII	CATG	5 cut(s)	38, 47, 74, 604, 710
CviQI	GTAC	3 cut(s)	314, 406, 1300
DdeI	CTNAG	3 cut(s)	375, 978, 1024
DpnI	GATC	6 cut(s)	72, 528, 912, 1142, 1272, 1290
DpnII	GATC	6 cut(s)	70, 526, 910, 1140, 1270, 1288
EaeI	YGGCCR	1 cut(s)	290
Eam1104I	CTCTTC	3 cut(s)	341, 636, 1152
EarI	CTCTTC	3 cut(s)	341, 636, 1152
Ecl136II	GAGCTC	1 cut(s)	874
Eco130I	CCWWGG	1 cut(s)	385
Eco24I	GRGCYC	2 cut(s)	868, 876
Eco31I	GGTCTC	2 cut(s)	701, 1196
Eco47I	GGWCC	3 cut(s)	41, 454, 592
Eco53kI	GAGCTC	1 cut(s)	874
Eco57I	CTGAAG	2 cut(s)	660, 1090
Eco88I	CYCGRG	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	874
EcoRI	GAATTC	3 cut(s)	599, 720, 1100
EcoRII	CCWGG	1 cut(s)	967
EcoT14I	CCWWGG	1 cut(s)	385
EcoT38I	GRGCYC	2 cut(s)	868, 876
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	5 cut(s)	41, 50, 77, 607, 713
FaqI	GGGAC	1 cut(s)	1124
FatI	CATG	5 cut(s)	37, 46, 73, 603, 709
FbaI	TGATCA	2 cut(s)	70, 1140
FblI	GTMKAC	1 cut(s)	931
Fnu4HI	GCNGC	2 cut(s)	680, 1182
FokI	GGATG	6 cut(s)	344, 516, 583, 784, 939, 1280
FriOI	GRGCYC	2 cut(s)	868, 876
Fsp4HI	GCNGC	2 cut(s)	680, 1182
FspBI	CTAG	4 cut(s)	524, 557, 797, 1089
GluI	GCNGC	2 cut(s)	680, 1182
GsuI	CTGGAG	2 cut(s)	683, 1178
HaeIII	GGCC	4 cut(s)	51, 292, 384, 958
HapII	CCGG	3 cut(s)	125, 137, 457
HgaI	GACGC	1 cut(s)	259
Hin1II	CATG	5 cut(s)	41, 50, 77, 607, 713
HindIII	AAGCTT	4 cut(s)	368, 545, 1007, 1060
HinfI	GANTC	3 cut(s)	356, 999, 1203
HpaII	CCGG	3 cut(s)	125, 137, 457
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	2 cut(s)	406, 932
Hpy188I	TCNGA	6 cut(s)	15, 345, 472, 1027, 1067, 1293
Hpy188III	TCNNGA	7 cut(s)	234, 320, 416, 638, 1117, 1157, 1195
Hpy8I	GTNNAC	2 cut(s)	406, 932
HpyAV	CCTTC	5 cut(s)	187, 231, 545, 753, 948
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	3 cut(s)	563, 634, 826
HpyCH4V	TGCA	5 cut(s)	574, 607, 679, 785, 923
HpyF10VI	GCNNNNNNNGC	3 cut(s)	298, 685, 964
HpyF3I	CTNAG	3 cut(s)	375, 978, 1024
HpySE526I	ACGT	3 cut(s)	563, 634, 826
Hsp92II	CATG	5 cut(s)	41, 50, 77, 607, 713
Ksp22I	TGATCA	2 cut(s)	70, 1140
Kzo9I	GATC	6 cut(s)	70, 526, 910, 1140, 1270, 1288
LmnI	GCTCC	1 cut(s)	133
Lsp1109I	GCAGC	1 cut(s)	691
LweI	GCATC	3 cut(s)	561, 762, 1110
MaeI	CTAG	4 cut(s)	524, 557, 797, 1089
MaeII	ACGT	3 cut(s)	563, 634, 826
MaeIII	GTNAC	4 cut(s)	247, 847, 1050, 1229
MalI	GATC	6 cut(s)	72, 528, 912, 1142, 1272, 1290
MboI	GATC	6 cut(s)	70, 526, 910, 1140, 1270, 1288
MboII	GAAGA	9 cut(s)	358, 653, 799, 994, 1051, 1096, 1109, 1139, 1306
MhlI	GDGCHC	2 cut(s)	868, 876
MlsI	TGGCCA	1 cut(s)	292
MluCI	AATT	7 cut(s)	276, 599, 720, 780, 960, 1100, 1310
MluNI	TGGCCA	1 cut(s)	292
MmeI	TCCRAC	1 cut(s)	1090
Mox20I	TGGCCA	1 cut(s)	292
MscI	TGGCCA	1 cut(s)	292
MseI	TTAA	4 cut(s)	147, 159, 738, 1308
MslI	CAYNNNNRTG	4 cut(s)	78, 534, 708, 1225
Msp20I	TGGCCA	1 cut(s)	292
MspI	CCGG	3 cut(s)	125, 137, 457
MspR9I	CCNGG	3 cut(s)	125, 126, 969
MvaI	CCWGG	1 cut(s)	969
MwoI	GCNNNNNNNGC	3 cut(s)	298, 685, 964
NciI	CCSGG	2 cut(s)	125, 126
NdeII	GATC	6 cut(s)	70, 526, 910, 1140, 1270, 1288
NheI	GCTAGC	1 cut(s)	796
NlaIII	CATG	5 cut(s)	41, 50, 77, 607, 713
NlaIV	GGNNCC	4 cut(s)	135, 342, 391, 1018
NmeAIII	GCCGAG	2 cut(s)	178, 866
NmuCI	GTSAC	3 cut(s)	247, 847, 1229
PfeI	GAWTC	3 cut(s)	356, 999, 1203
PflMI	CCANNNNNTGG	2 cut(s)	38, 1130
PkrI	GCNGC	2 cut(s)	681, 1183
Psp124BI	GAGCTC	1 cut(s)	876
Psp6I	CCWGG	1 cut(s)	967
PspGI	CCWGG	1 cut(s)	967
PspN4I	GGNNCC	4 cut(s)	135, 342, 391, 1018
PspPI	GGNCC	3 cut(s)	41, 454, 592
PstNI	CAGNNNCTG	1 cut(s)	685
RsaI	GTAC	3 cut(s)	315, 407, 1301
RsaNI	GTAC	3 cut(s)	314, 406, 1300
RseI	CAYNNNNRTG	4 cut(s)	78, 534, 708, 1225
SacI	GAGCTC	1 cut(s)	876
SaqAI	TTAA	4 cut(s)	147, 159, 738, 1308
SatI	GCNGC	2 cut(s)	680, 1182
Sau3AI	GATC	6 cut(s)	70, 526, 910, 1140, 1270, 1288
Sau96I	GGNCC	3 cut(s)	41, 454, 592
ScrFI	CCNGG	3 cut(s)	125, 126, 969
SduI	GDGCHC	2 cut(s)	868, 876
SfaNI	GCATC	3 cut(s)	561, 762, 1110
SfcI	CTRYAG	2 cut(s)	394, 888
SinI	GGWCC	3 cut(s)	41, 454, 592
SmaI	CCCGGG	1 cut(s)	126
SmiMI	CAYNNNNRTG	4 cut(s)	78, 534, 708, 1225
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	7 cut(s)	276, 599, 720, 780, 960, 1100, 1310
SsiI	CCGC	1 cut(s)	1181
SspMI	CTAG	4 cut(s)	524, 557, 797, 1089
SstI	GAGCTC	1 cut(s)	876
StyD4I	CCNGG	3 cut(s)	123, 124, 967
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	3 cut(s)	566, 637, 829
TaqI	TCGA	1 cut(s)	1118
TasI	AATT	7 cut(s)	276, 599, 720, 780, 960, 1100, 1310
TatI	WGTACW	1 cut(s)	405
TauI	GCSGC	1 cut(s)	1184
TfiI	GAWTC	3 cut(s)	356, 999, 1203
Tru1I	TTAA	4 cut(s)	147, 159, 738, 1308
Tru9I	TTAA	4 cut(s)	147, 159, 738, 1308
TscAI	CASTG	5 cut(s)	252, 658, 710, 1183, 1254
TseFI	GTSAC	3 cut(s)	247, 847, 1229
TseI	GCWGC	1 cut(s)	679
Tsp45I	GTSAC	3 cut(s)	247, 847, 1229
TspDTI	ATGAA	5 cut(s)	288, 592, 983, 1061, 1322
TspGWI	ACGGA	2 cut(s)	532, 912
TspMI	CCCGGG	1 cut(s)	124
TspRI	CASTG	5 cut(s)	252, 658, 710, 1183, 1254
Van91I	CCANNNNNTGG	2 cut(s)	38, 1130
VpaK11BI	GGWCC	3 cut(s)	41, 454, 592
XapI	RAATTY	3 cut(s)	599, 720, 1100
XmaI	CCCGGG	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	931
XspI	CTAG	4 cut(s)	524, 557, 797, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.