Rw5G025660

Mitogen-activated protein kinase kinase kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
36735739 .. 36737275
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G025660.1

Sequence Viewer

Length: 1245 bp
ATGGAGTACGTACCCGGCGGCACGCTTTCCGATGCGATTCAAAGACATGGAAAGGAGCTCGAGGAGTGTATGATCCAATCATACACGCACCAGATTGTGGAGGGGTTGGGATATCTTCATTCAATTGGGTTGGCGCATTGTGACATTAAGAGCCAGAACATTTTGGTGTCTGAAGAGAGTGCCAAGATCAAAATTGCTGATCTGGGTTGTGCTAAATTGGTGCATGAAGCATCCACGTCAGCATTTTCCGGCACGCCGGTGTTCATGGCGCCGGAGGTGGCACGCGGAGAAGAGCAGGGTTTTGAAGCAGATATATGGGCACTTGGCTGTACATTGATTGAAATGGCCACAGGGGGCAATAGCCCCTGGCCGGATGTAAGTGATCCTGTTTCCGCTCTCTACCGGATTGGATTCTCCGGTGACTTGCCGGAGTTTCCGAGATGGCTTTCGAAAGAGGGTAAGGATTTCTTGAGCAAGTGTTTGACGACATGCCCAAGAGAGAGGTGGACAGCTAAGAAGCTTCTTGAGCATCCATTTCTTAAAGACTACTCAATGGGGTCTACGACTCTGAGCTCATCTCCTATTAGTGTGTTGGATCAAGGCCTTTGGGATTCATTTGAAGTCTTTGAAGAAGCTCCTCAGAATCAAGTTTGTGAAATCATTTGTTCCAGTTCTTCTCCGCAAGAAAGGATCAAGATGTTGATCGGAGGTACTTGTTCTGCATTTTCAGGTATACCCAATTGGGAATTTGATGGGAATTGGTGCACTGTCAGAAGCAATGGTGCTGAGGATAGCCAAGCCTTATTGAAGAGCAACAATGTCATTGTTGCTATTTCAGAGCAGGAATATATGACGGCAACTGTTGCATCAGATATGGATTCCATTATTGATGAGGAGCTTCACAGTTCAACGTGTGATGATAATGAGGAAATAGATTCTGAATGTTTTGTAGAGTCTAACAGTAGAATTGGCAGTGATGGAGATTTTGTAATTTCATACATAGTTACAGACGATTCTTTCGTAAACAATCTTGATATTGAACAAGATACTCGGAATTATTCTTTTATTCACTCCCATTGTTATCATTCGTGTTTTGATTTTTCTGGTCAATCTGTGGTGCTTAAGTTCCTCTTGTTAATGTCTTCTCTGTTTTGTGTTAGTTTGGTACAATGCCACATGACAGATCAATTTCTCTACAGGGTAAATGCATATATGTTAAGGGCCAAATGCCTTATTCGAGCATAA

Protein Analysis

414

Amino Acids

45.94

Weight (kDa)

4.54

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 180 4.7e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 1 - 176 3.2e-27 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017265)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23120
malus_domestica MD00G1159200.v1.1 MD11G1213700.v1.1
prunus_persica Prupe.4G217600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0040771
rosa_laevigata RLG00000034000
rosa_multiflora Rmu_ssc0000274.1_g000002
rosa_rugosa Rorug05G0187100
rosa_samantha Rh5AG272900 Rh5BG278000 Rh5CG310000 Rh5DG285900
rosa_wichuraiana Rw5G025660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 268
AccB7I CCANNNNNTGG 1 cut(s) 97
AccBSI CCGCTC 1 cut(s) 395
AccI GTMKAC 2 cut(s) 560, 733
AccII CGCG 1 cut(s) 285
AciI CCGC 4 cut(s) 18, 285, 393, 680
AclWI GGATC 4 cut(s) 67, 377, 603, 698
AcoI YGGCCR 2 cut(s) 345, 368
AcsI RAATTY 1 cut(s) 746
AcuI CTGAAG 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 5 cut(s) 8, 12, 331, 712, 1167
AfiI CCNNNNNNNGG 2 cut(s) 97, 370
AflII CTTAAG 1 cut(s) 1121
AflIII ACRYGT 1 cut(s) 911
AgsI TTSAA 9 cut(s) 41, 123, 305, 341, 620, 629, 808, 909, 1040
AjiI CACGTC 1 cut(s) 237
AjnI CCWGG 1 cut(s) 365
AleI CACNNNNGTG 1 cut(s) 257
AluBI AGCT 6 cut(s) 58, 512, 520, 573, 635, 898
AluI AGCT 6 cut(s) 58, 512, 520, 573, 635, 898
Alw21I GWGCWC 3 cut(s) 60, 575, 767
Alw44I GTGCAC 1 cut(s) 763
AlwI GGATC 4 cut(s) 67, 377, 603, 698
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 4 cut(s) 345, 368, 601, 1221
ApaLI GTGCAC 1 cut(s) 763
ApoI RAATTY 1 cut(s) 746
ArsI GACNNNNNNTTYG 2 cut(s) 1001, 1033
AspLEI GCGC 2 cut(s) 136, 271
AspS9I GGNCC 1 cut(s) 1221
AsuC2I CCSGG 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 431
AsuII TTCGAA 1 cut(s) 449
AvaI CYCGRG 1 cut(s) 59
BaeGI GKGCMC 2 cut(s) 322, 767
BalI TGGCCA 1 cut(s) 347
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 2 cut(s) 60, 575
BbsI GAAGAC 1 cut(s) 1134
Bbv12I GWGCWC 3 cut(s) 60, 575, 767
BbvCI CCTCAGC 1 cut(s) 786
BccI CCATC 3 cut(s) 435, 746, 971
BceAI ACGGC 1 cut(s) 870
BciT130I CCWGG 1 cut(s) 367
BcnI CCSGG 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 1195
BfoI RGCGCY 1 cut(s) 272
BfrI CTTAAG 1 cut(s) 1121
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 2 cut(s) 15, 367
BmeT110I CYCGRG 1 cut(s) 59
BmgBI CACGTC 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 1221
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 2 cut(s) 15, 367
BmsI GCATC 4 cut(s) 22, 239, 538, 875
BpiI GAAGAC 1 cut(s) 1134
BplI GAGNNNNNCTC 2 cut(s) 562, 594
Bpu10I CCTNAGC 1 cut(s) 786
Bpu14I TTCGAA 1 cut(s) 449
BpuEI CTTGAG 2 cut(s) 490, 545
BpuMI CCSGG 1 cut(s) 15
BsaAI YACGTR 1 cut(s) 10
BsaBI GATNNNNATC 1 cut(s) 701
BsaHI GRCGYC 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 365
BsaWI WCCGGW 2 cut(s) 402, 416
BsaXI ACNNNNNCTCC 2 cut(s) 972, 1002
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 370
Bse118I RCCGGY 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 669
Bse3DI GCAATG 1 cut(s) 784
Bse8I GATNNNNATC 1 cut(s) 701
BseBI CCWGG 1 cut(s) 367
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 3 cut(s) 230, 379, 529
BseJI GATNNNNATC 1 cut(s) 701
BseLI CCNNNNNNNGG 2 cut(s) 97, 370
BseMI GCAATG 1 cut(s) 784
BseMII CTCAG 3 cut(s) 560, 653, 777
BseNI ACTGG 1 cut(s) 669
BseRI GAGGAG 3 cut(s) 77, 627, 908
BseSI GKGCMC 2 cut(s) 322, 767
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 4 cut(s) 347, 370, 603, 1223
BshNI GGYRCC 1 cut(s) 268
BsiHKAI GWGCWC 3 cut(s) 60, 575, 767
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 8 cut(s) 15, 249, 257, 272, 371, 403, 417, 428
BslI CCNNNNNNNGG 2 cut(s) 97, 370
BsnI GGCC 4 cut(s) 347, 370, 603, 1223
BsoBI CYCGRG 1 cut(s) 59
Bsp119I TTCGAA 1 cut(s) 449
Bsp1286I GDGCHC 4 cut(s) 60, 322, 575, 767
Bsp1407I TGTACA 1 cut(s) 329
Bsp143I GATC 8 cut(s) 72, 186, 199, 382, 595, 690, 702, 1183
BspACI CCGC 4 cut(s) 18, 285, 393, 680
BspANI GGCC 4 cut(s) 347, 370, 603, 1223
BspCNI CTCAG 3 cut(s) 561, 652, 778
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 4 cut(s) 67, 377, 603, 698
BspQI GCTCTTC 2 cut(s) 285, 803
BspT104I TTCGAA 1 cut(s) 449
BspT107I GGYRCC 1 cut(s) 268
BspTI CTTAAG 1 cut(s) 1121
BsrBI CCGCTC 1 cut(s) 395
BsrDI GCAATG 1 cut(s) 784
BsrFI RCCGGY 1 cut(s) 256
BsrGI TGTACA 1 cut(s) 329
BsrI ACTGG 1 cut(s) 669
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 8 cut(s) 72, 186, 199, 382, 595, 690, 702, 1183
BssNAI GTATAC 1 cut(s) 734
BssNI GRCGYC 1 cut(s) 269
Bst1107I GTATAC 1 cut(s) 734
Bst2UI CCWGG 1 cut(s) 367
Bst4CI ACNGT 4 cut(s) 769, 862, 905, 962
Bst6I CTCTTC 3 cut(s) 168, 285, 803
BstACI GRCGYC 1 cut(s) 269
BstAFI CTTAAG 1 cut(s) 1121
BstAPI GCANNNNNTGC 1 cut(s) 863
BstAUI TGTACA 1 cut(s) 329
BstBAI YACGTR 1 cut(s) 10
BstBI TTCGAA 1 cut(s) 449
BstC8I GCNNGC 3 cut(s) 23, 254, 283
BstDEI CTNAG 4 cut(s) 513, 569, 639, 786
BstF5I GGATG 3 cut(s) 230, 379, 529
BstFNI CGCG 1 cut(s) 285
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 2 cut(s) 136, 271
BstKTI GATC 8 cut(s) 75, 189, 202, 385, 598, 693, 705, 1186
BstMBI GATC 8 cut(s) 72, 186, 199, 382, 595, 690, 702, 1183
BstMWI GCNNNNNNNGC 2 cut(s) 526, 863
BstNI CCWGG 1 cut(s) 367
BstNSI RCATGY 1 cut(s) 492
BstSCI CCNGG 2 cut(s) 13, 365
BstSFI CTRYAG 1 cut(s) 1195
BstSLI GKGCMC 2 cut(s) 322, 767
BstSNI TACGTA 1 cut(s) 10
BstUI CGCG 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 1134
BstZ17I GTATAC 1 cut(s) 734
BsuRI GGCC 4 cut(s) 347, 370, 603, 1223
BtrI CACGTC 1 cut(s) 237
BtsCI GGATG 3 cut(s) 230, 379, 529
BtsI GCAGTG 1 cut(s) 979
BtsIMutI CAGTG 2 cut(s) 765, 979
Cac8I GCNNGC 3 cut(s) 23, 254, 283
CfoI GCGC 2 cut(s) 136, 271
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 1221
Csp6I GTAC 5 cut(s) 7, 11, 330, 711, 1166
CviAII CATG 5 cut(s) 47, 224, 265, 489, 1177
CviQI GTAC 5 cut(s) 7, 11, 330, 711, 1166
DdeI CTNAG 4 cut(s) 513, 569, 639, 786
DinI GGCGCC 1 cut(s) 270
DpnI GATC 8 cut(s) 74, 188, 201, 384, 597, 692, 704, 1185
DpnII GATC 8 cut(s) 72, 186, 199, 382, 595, 690, 702, 1183
EaeI YGGCCR 2 cut(s) 345, 368
Eam1104I CTCTTC 3 cut(s) 168, 285, 803
EarI CTCTTC 3 cut(s) 168, 285, 803
Ecl136II GAGCTC 2 cut(s) 58, 573
Eco105I TACGTA 1 cut(s) 10
Eco147I AGGCCT 1 cut(s) 603
Eco24I GRGCYC 2 cut(s) 60, 575
Eco32I GATATC 1 cut(s) 113
Eco53kI GAGCTC 2 cut(s) 58, 573
Eco57I CTGAAG 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 59
EcoICRI GAGCTC 2 cut(s) 58, 573
EcoRII CCWGG 1 cut(s) 365
EcoRV GATATC 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 1210
EcoT38I GRGCYC 2 cut(s) 60, 575
EgeI GGCGCC 1 cut(s) 270
EheI GGCGCC 1 cut(s) 270
FaeI CATG 5 cut(s) 50, 227, 268, 492, 1180
FalI AAGNNNNNCTT 4 cut(s) 452, 484, 1115, 1147
FatI CATG 5 cut(s) 46, 223, 264, 488, 1176
FblI GTMKAC 2 cut(s) 560, 733
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 3 cut(s) 217, 386, 516
FriOI GRGCYC 2 cut(s) 60, 575
Fsp4HI GCNGC 1 cut(s) 19
GlaI GCGC 2 cut(s) 135, 270
GluI GCNGC 1 cut(s) 19
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 4 cut(s) 347, 370, 603, 1223
HapII CCGG 8 cut(s) 15, 249, 257, 272, 371, 403, 417, 428
HhaI GCGC 2 cut(s) 136, 271
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 5 cut(s) 50, 227, 268, 492, 1180
Hin6I GCGC 2 cut(s) 134, 269
HinP1I GCGC 2 cut(s) 134, 269
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 9 cut(s) 37, 411, 565, 611, 643, 878, 935, 953, 1013
HpaII CCGG 8 cut(s) 15, 249, 257, 272, 371, 403, 417, 428
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 5 cut(s) 507, 561, 734, 765, 1024
Hpy188III TCNNGA 4 cut(s) 469, 524, 694, 1031
Hpy8I GTNNAC 5 cut(s) 507, 561, 734, 765, 1024
HpyCH4III ACNGT 4 cut(s) 769, 862, 905, 962
HpyCH4IV ACGT 3 cut(s) 9, 236, 911
HpyCH4V TGCA 5 cut(s) 223, 722, 765, 866, 1208
HpyF10VI GCNNNNNNNGC 2 cut(s) 526, 863
HpyF3I CTNAG 4 cut(s) 513, 569, 639, 786
HpySE526I ACGT 3 cut(s) 9, 236, 911
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 5 cut(s) 50, 227, 268, 492, 1180
HspAI GCGC 2 cut(s) 134, 269
KasI GGCGCC 1 cut(s) 268
Kzo9I GATC 8 cut(s) 72, 186, 199, 382, 595, 690, 702, 1183
LguI GCTCTTC 2 cut(s) 285, 803
LmnI GCTCC 3 cut(s) 55, 640, 895
LweI GCATC 4 cut(s) 22, 239, 538, 875
MaeII ACGT 3 cut(s) 9, 236, 911
MaeIII GTNAC 3 cut(s) 140, 419, 1003
MalI GATC 8 cut(s) 74, 188, 201, 384, 597, 692, 704, 1185
MbiI CCGCTC 1 cut(s) 395
MboI GATC 8 cut(s) 72, 186, 199, 382, 595, 690, 702, 1183
MboII GAAGA 7 cut(s) 107, 185, 302, 641, 666, 820, 1134
MfeI CAATTG 2 cut(s) 123, 739
MhlI GDGCHC 4 cut(s) 60, 322, 575, 767
MlsI TGGCCA 1 cut(s) 347
MluNI TGGCCA 1 cut(s) 347
Mly113I GGCGCC 1 cut(s) 269
MlyI GAGTC 2 cut(s) 559, 962
MmeI TCCRAC 1 cut(s) 573
Mox20I TGGCCA 1 cut(s) 347
Mph1103I ATGCAT 1 cut(s) 1210
MscI TGGCCA 1 cut(s) 347
MseI TTAA 5 cut(s) 147, 540, 1122, 1136, 1217
MslI CAYNNNNRTG 2 cut(s) 164, 257
Msp20I TGGCCA 1 cut(s) 347
MspCI CTTAAG 1 cut(s) 1121
MspI CCGG 8 cut(s) 15, 249, 257, 272, 371, 403, 417, 428
MspR9I CCNGG 2 cut(s) 15, 367
MunI CAATTG 2 cut(s) 123, 739
MvaI CCWGG 1 cut(s) 367
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 2 cut(s) 526, 863
NarI GGCGCC 1 cut(s) 269
NciI CCSGG 1 cut(s) 15
NdeII GATC 8 cut(s) 72, 186, 199, 382, 595, 690, 702, 1183
NlaIII CATG 5 cut(s) 50, 227, 268, 492, 1180
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 2 cut(s) 140, 419
NsiI ATGCAT 1 cut(s) 1210
NspI RCATGY 1 cut(s) 492
NspV TTCGAA 1 cut(s) 449
OliI CACNNNNGTG 1 cut(s) 257
PaeR7I CTCGAG 1 cut(s) 59
PceI AGGCCT 1 cut(s) 603
PciSI GCTCTTC 2 cut(s) 285, 803
PcsI WCGNNNNNNNCGW 1 cut(s) 1017
PfeI GAWTC 7 cut(s) 37, 411, 611, 643, 878, 935, 1013
PflMI CCANNNNNTGG 1 cut(s) 97
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 2 cut(s) 559, 961
PluTI GGCGCC 1 cut(s) 272
PpsI GAGTC 2 cut(s) 559, 961
Ppu21I YACGTR 1 cut(s) 10
Psp124BI GAGCTC 2 cut(s) 60, 575
Psp6I CCWGG 1 cut(s) 365
PspGI CCWGG 1 cut(s) 365
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 1221
PspXI VCTCGAGB 1 cut(s) 59
RsaI GTAC 5 cut(s) 8, 12, 331, 712, 1167
RsaNI GTAC 5 cut(s) 7, 11, 330, 711, 1166
RseI CAYNNNNRTG 2 cut(s) 164, 257
SacI GAGCTC 2 cut(s) 60, 575
SapI GCTCTTC 2 cut(s) 285, 803
SaqAI TTAA 5 cut(s) 147, 540, 1122, 1136, 1217
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 8 cut(s) 72, 186, 199, 382, 595, 690, 702, 1183
Sau96I GGNCC 1 cut(s) 1221
SchI GAGTC 2 cut(s) 559, 962
ScrFI CCNGG 2 cut(s) 15, 367
SduI GDGCHC 4 cut(s) 60, 322, 575, 767
SfaNI GCATC 4 cut(s) 22, 239, 538, 875
SfcI CTRYAG 1 cut(s) 1195
SfoI GGCGCC 1 cut(s) 270
Sfr274I CTCGAG 1 cut(s) 59
SfuI TTCGAA 1 cut(s) 449
SgrAI CRCCGGYG 1 cut(s) 256
SlaI CTCGAG 1 cut(s) 59
SmiMI CAYNNNNRTG 2 cut(s) 164, 257
SmlI CTYRAG 4 cut(s) 59, 469, 524, 1121
SmoI CTYRAG 4 cut(s) 59, 469, 524, 1121
SnaBI TACGTA 1 cut(s) 10
SseBI AGGCCT 1 cut(s) 603
SsiI CCGC 4 cut(s) 18, 285, 393, 680
SspDI GGCGCC 1 cut(s) 268
SstI GAGCTC 2 cut(s) 60, 575
StuI AGGCCT 1 cut(s) 603
StyD4I CCNGG 2 cut(s) 13, 365
TaaI ACNGT 4 cut(s) 769, 862, 905, 962
TaiI ACGT 3 cut(s) 12, 239, 914
TaqI TCGA 3 cut(s) 60, 449, 1237
TatI WGTACW 1 cut(s) 329
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 7 cut(s) 37, 411, 611, 643, 878, 935, 1013
Tru1I TTAA 5 cut(s) 147, 540, 1122, 1136, 1217
Tru9I TTAA 5 cut(s) 147, 540, 1122, 1136, 1217
TscAI CASTG 2 cut(s) 772, 979
TseFI GTSAC 2 cut(s) 140, 419
Tsp45I GTSAC 2 cut(s) 140, 419
TspDTI ATGAA 5 cut(s) 107, 240, 253, 603, 984
TspRI CASTG 2 cut(s) 772, 979
Van91I CCANNNNNTGG 1 cut(s) 97
Vha464I CTTAAG 1 cut(s) 1121
VneI GTGCAC 1 cut(s) 763
XapI RAATTY 1 cut(s) 746
XceI RCATGY 1 cut(s) 492
XcmI CCANNNNNNNNNTGG 1 cut(s) 501
XhoI CTCGAG 1 cut(s) 59
XmiI GTMKAC 2 cut(s) 560, 733
Zsp2I ATGCAT 1 cut(s) 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.