Rab subfamily of small GTPases
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G02130 |
| fragaria_vesca | FvH4_7g26840 |
| malus_domestica | MD01G1176600.v1.1 MD04G1050400.v1.1 MD07G1247800.v1.1 |
| prunus_persica | Prupe.2G271800_v2.0.a1 Prupe.2G271800_v2.0.a1 |
| pyrus_communis | pycom01g18730 |
| rosa_chinensis | RchiOBHm_Chr1g0373531 |
| rosa_laevigata | RLG00000026818 |
| rosa_roxburghii | Rroxscaffold_4G00284170 |
| rosa_rugosa | Rorug01G0377900 Rorug01G0378000 |
| rosa_samantha | Rh1CG364400 |
| rosa_wichuraiana | Rw1G034800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 261 |
| AcsI | RAATTY | 1 cut(s) | 180 |
| AfaI | GTAC | 1 cut(s) | 14 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 184 |
| AgsI | TTSAA | 2 cut(s) | 28, 289 |
| AhlI | ACTAGT | 1 cut(s) | 449 |
| AluBI | AGCT | 4 cut(s) | 31, 175, 285, 533 |
| AluI | AGCT | 4 cut(s) | 31, 175, 285, 533 |
| Alw26I | GTCTC | 1 cut(s) | 440 |
| ApeKI | GCWGC | 2 cut(s) | 597, 600 |
| ApoI | RAATTY | 1 cut(s) | 180 |
| AsuNHI | GCTAGC | 1 cut(s) | 521 |
| BaeGI | GKGCMC | 1 cut(s) | 244 |
| BbsI | GAAGAC | 1 cut(s) | 62 |
| BbvI | GCAGC | 2 cut(s) | 584, 587 |
| BccI | CCATC | 2 cut(s) | 152, 512 |
| BceAI | ACGGC | 1 cut(s) | 610 |
| BcoDI | GTCTC | 1 cut(s) | 440 |
| BcuI | ACTAGT | 1 cut(s) | 449 |
| BfaI | CTAG | 4 cut(s) | 222, 330, 450, 522 |
| BisI | GCNGC | 2 cut(s) | 598, 601 |
| BlsI | GCNGC | 2 cut(s) | 599, 602 |
| BmsI | GCATC | 2 cut(s) | 451, 509 |
| BmtI | GCTAGC | 1 cut(s) | 525 |
| BpiI | GAAGAC | 1 cut(s) | 62 |
| BsaJI | CCNNGG | 2 cut(s) | 235, 408 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 184 |
| Bse3DI | GCAATG | 2 cut(s) | 308, 498 |
| BseDI | CCNNGG | 2 cut(s) | 235, 408 |
| BseGI | GGATG | 1 cut(s) | 500 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 184 |
| BseMI | GCAATG | 2 cut(s) | 308, 498 |
| BseSI | GKGCMC | 1 cut(s) | 244 |
| BseXI | GCAGC | 2 cut(s) | 584, 587 |
| BseYI | CCCAGC | 1 cut(s) | 533 |
| BsgI | GTGCAG | 1 cut(s) | 581 |
| Bsh1285I | CGRYCG | 1 cut(s) | 558 |
| BsiEI | CGRYCG | 1 cut(s) | 558 |
| BslFI | GGGAC | 1 cut(s) | 200 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 184 |
| BsmAI | GTCTC | 1 cut(s) | 440 |
| BsmFI | GGGAC | 1 cut(s) | 200 |
| Bsp1286I | GDGCHC | 1 cut(s) | 244 |
| Bsp143I | GATC | 3 cut(s) | 319, 370, 564 |
| BspOI | GCTAGC | 1 cut(s) | 525 |
| BsrDI | GCAATG | 2 cut(s) | 308, 498 |
| BssECI | CCNNGG | 2 cut(s) | 235, 408 |
| BssMI | GATC | 3 cut(s) | 319, 370, 564 |
| BssT1I | CCWWGG | 1 cut(s) | 408 |
| Bst4CI | ACNGT | 4 cut(s) | 148, 207, 236, 559 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 461, 497 |
| BstC8I | GCNNGC | 1 cut(s) | 523 |
| BstDEI | CTNAG | 1 cut(s) | 9 |
| BstDSI | CCRYGG | 1 cut(s) | 235 |
| BstF5I | GGATG | 1 cut(s) | 500 |
| BstKTI | GATC | 3 cut(s) | 322, 373, 567 |
| BstMAI | GTCTC | 1 cut(s) | 440 |
| BstMBI | GATC | 3 cut(s) | 319, 370, 564 |
| BstMCI | CGRYCG | 1 cut(s) | 558 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 461, 488, 497 |
| BstSLI | GKGCMC | 1 cut(s) | 244 |
| BstV1I | GCAGC | 2 cut(s) | 584, 587 |
| BstV2I | GAAGAC | 1 cut(s) | 62 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 533 |
| BtgI | CCRYGG | 1 cut(s) | 235 |
| BtsCI | GGATG | 1 cut(s) | 500 |
| BtsI | GCAGTG | 1 cut(s) | 189 |
| BtsIMutI | CAGTG | 1 cut(s) | 189 |
| Cac8I | GCNNGC | 1 cut(s) | 523 |
| Csp6I | GTAC | 1 cut(s) | 13 |
| CviAII | CATG | 2 cut(s) | 245, 487 |
| CviQI | GTAC | 1 cut(s) | 13 |
| DdeI | CTNAG | 1 cut(s) | 9 |
| DpnI | GATC | 3 cut(s) | 321, 372, 566 |
| DpnII | GATC | 3 cut(s) | 319, 370, 564 |
| DraI | TTTAAA | 1 cut(s) | 136 |
| Eco130I | CCWWGG | 1 cut(s) | 408 |
| EcoT14I | CCWWGG | 1 cut(s) | 408 |
| ErhI | CCWWGG | 1 cut(s) | 408 |
| FaeI | CATG | 2 cut(s) | 248, 490 |
| FaiI | YATR | 6 cut(s) | 99, 246, 327, 399, 443, 488 |
| FaqI | GGGAC | 1 cut(s) | 200 |
| FatI | CATG | 2 cut(s) | 244, 486 |
| FblI | GTMKAC | 1 cut(s) | 261 |
| Fnu4HI | GCNGC | 2 cut(s) | 598, 601 |
| FokI | GGATG | 1 cut(s) | 487 |
| Fsp4HI | GCNGC | 2 cut(s) | 598, 601 |
| FspBI | CTAG | 4 cut(s) | 222, 330, 450, 522 |
| GluI | GCNGC | 2 cut(s) | 598, 601 |
| GsaI | CCCAGC | 1 cut(s) | 537 |
| Hin1II | CATG | 2 cut(s) | 248, 490 |
| HincII | GTYRAC | 1 cut(s) | 343 |
| HindII | GTYRAC | 1 cut(s) | 343 |
| HindIII | AAGCTT | 1 cut(s) | 283 |
| HinfI | GANTC | 6 cut(s) | 4, 47, 81, 92, 126, 433 |
| Hpy166II | GTNNAC | 2 cut(s) | 262, 343 |
| Hpy188I | TCNGA | 3 cut(s) | 88, 370, 569 |
| Hpy188III | TCNNGA | 4 cut(s) | 8, 200, 211, 430 |
| Hpy8I | GTNNAC | 2 cut(s) | 262, 343 |
| HpyCH4III | ACNGT | 4 cut(s) | 148, 207, 236, 559 |
| HpyCH4IV | ACGT | 1 cut(s) | 471 |
| HpyCH4V | TGCA | 4 cut(s) | 455, 500, 545, 562 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 461, 488, 497 |
| HpyF3I | CTNAG | 1 cut(s) | 9 |
| HpySE526I | ACGT | 1 cut(s) | 471 |
| Hsp92II | CATG | 2 cut(s) | 248, 490 |
| Kzo9I | GATC | 3 cut(s) | 319, 370, 564 |
| LmnI | GCTCC | 2 cut(s) | 36, 180 |
| LpnPI | CCDG | 9 cut(s) | 21, 36, 47, 180, 196, 464, 519, 543, 591 |
| Lsp1109I | GCAGC | 2 cut(s) | 584, 587 |
| LweI | GCATC | 2 cut(s) | 451, 509 |
| MaeI | CTAG | 4 cut(s) | 222, 330, 450, 522 |
| MaeII | ACGT | 1 cut(s) | 471 |
| MaeIII | GTNAC | 4 cut(s) | 107, 227, 268, 332 |
| MalI | GATC | 3 cut(s) | 321, 372, 566 |
| MboI | GATC | 3 cut(s) | 319, 370, 564 |
| MboII | GAAGA | 3 cut(s) | 62, 290, 601 |
| MhlI | GDGCHC | 1 cut(s) | 244 |
| MluCI | AATT | 5 cut(s) | 138, 168, 180, 249, 315 |
| MlyI | GAGTC | 1 cut(s) | 135 |
| MmeI | TCCRAC | 1 cut(s) | 337 |
| MnlI | CCTC | 1 cut(s) | 563 |
| MseI | TTAA | 2 cut(s) | 135, 171 |
| MslI | CAYNNNNRTG | 1 cut(s) | 491 |
| MspA1I | CMGCKG | 1 cut(s) | 533 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 461, 488, 497 |
| NdeII | GATC | 3 cut(s) | 319, 370, 564 |
| NheI | GCTAGC | 1 cut(s) | 521 |
| NlaIII | CATG | 2 cut(s) | 248, 490 |
| NmuCI | GTSAC | 2 cut(s) | 268, 332 |
| PfeI | GAWTC | 5 cut(s) | 4, 47, 81, 92, 433 |
| PflFI | GACNNNGTC | 1 cut(s) | 338 |
| PkrI | GCNGC | 2 cut(s) | 599, 602 |
| PleI | GAGTC | 1 cut(s) | 134 |
| PpsI | GAGTC | 1 cut(s) | 134 |
| PspFI | CCCAGC | 1 cut(s) | 533 |
| PsyI | GACNNNGTC | 1 cut(s) | 338 |
| PvuII | CAGCTG | 1 cut(s) | 533 |
| RsaI | GTAC | 1 cut(s) | 14 |
| RsaNI | GTAC | 1 cut(s) | 13 |
| RseI | CAYNNNNRTG | 1 cut(s) | 491 |
| SaqAI | TTAA | 2 cut(s) | 135, 171 |
| SatI | GCNGC | 2 cut(s) | 598, 601 |
| Sau3AI | GATC | 3 cut(s) | 319, 370, 564 |
| SchI | GAGTC | 1 cut(s) | 135 |
| SduI | GDGCHC | 1 cut(s) | 244 |
| SetI | ASST | 5 cut(s) | 33, 177, 287, 474, 535 |
| SfaNI | GCATC | 2 cut(s) | 451, 509 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 491 |
| SpeI | ACTAGT | 1 cut(s) | 449 |
| Sse9I | AATT | 5 cut(s) | 138, 168, 180, 249, 315 |
| SspMI | CTAG | 4 cut(s) | 222, 330, 450, 522 |
| StyI | CCWWGG | 1 cut(s) | 408 |
| TaaI | ACNGT | 4 cut(s) | 148, 207, 236, 559 |
| TaiI | ACGT | 1 cut(s) | 474 |
| TaqI | TCGA | 1 cut(s) | 129 |
| TasI | AATT | 5 cut(s) | 138, 168, 180, 249, 315 |
| TfiI | GAWTC | 5 cut(s) | 4, 47, 81, 92, 433 |
| Tru1I | TTAA | 2 cut(s) | 135, 171 |
| Tru9I | TTAA | 2 cut(s) | 135, 171 |
| TscAI | CASTG | 1 cut(s) | 196 |
| TseFI | GTSAC | 2 cut(s) | 268, 332 |
| TseI | GCWGC | 2 cut(s) | 597, 600 |
| Tsp45I | GTSAC | 2 cut(s) | 268, 332 |
| TspDTI | ATGAA | 5 cut(s) | 17, 291, 414, 438, 475 |
| TspRI | CASTG | 1 cut(s) | 196 |
| Tth111I | GACNNNGTC | 1 cut(s) | 338 |
| XapI | RAATTY | 1 cut(s) | 180 |
| XmiI | GTMKAC | 1 cut(s) | 261 |
| XspI | CTAG | 4 cut(s) | 222, 330, 450, 522 |