Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0015808

Physical Location & Seq

Genomic Coordinates Forward (+)

63666928 .. 63669767

Gene Structure 2840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG364400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGATACAGGATGATTCATATCTGGACAGCTATATCAGCACAATCGGAGTTGATTTTAAAATTCGCACTGTGGAGCAAGATAGTAAAACAATCAAACTTCAAATTTGGGACACTGCTGGACAAGAACGTTTTAGGACAATTACTAGTAGCTACTACCGTGGGGCACATGGCATTATAATAGTCTATGACGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGTTGAGTGAAATTGACCGTTATGCCAGTGAGAATGTAAACAAGCTTCTTGTTGGCAACAAGTCTGACCTCACTGCTAACAAAGTTGTGTCTTATGAAACAGCTAAGGCATTTGCTGATGAGATTGGGATTCCTTTCATGGAGACTAGTGCAAAAAATGCTACTAATGTGGAGCAGGCATTTATGGCAATGTCTGCTGACATCAAGAATAGGATGGCAACTCAACCAATGAACAATGCGAGGCCACCAACAGTGCAAATTCGAGGACAACCTGTCAACCAGAATTCTGGCTGCTGCTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006888 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0022414 GO:0030054 GO:0030154 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

Ras

Protein Analysis

176

Amino Acids

19.72

Weight (kDa)

5.2

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	4 - 144	2.8e-55	Ras family
Roc	PF08477	4 - 98	1.7e-25	Ras of Complex, Roc, domain of DAPkinase
Arf	PF00025	17 - 103	8.4e-13	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02130
fragaria_vesca	FvH4_7g26840
malus_domestica	MD01G1176600.v1.1 MD04G1050400.v1.1 MD07G1247800.v1.1
prunus_persica	Prupe.2G271800_v2.0.a1 Prupe.2G271800_v2.0.a1
pyrus_communis	pycom01g18730
rosa_chinensis	RchiOBHm_Chr1g0373531
rosa_laevigata	RLG00000026818
rosa_roxburghii	Rroxscaffold_4G00284170
rosa_rugosa	Rorug01G0377900 Rorug01G0378000
rosa_samantha	Rh1CG364400
rosa_wichuraiana	Rw1G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	176
AclI	AACGTT	1 cut(s)	127
AcsI	RAATTY	4 cut(s)	60, 102, 483, 508
AgsI	TTSAA	2 cut(s)	101, 211
AhdI	GACNNNNNGTC	1 cut(s)	497
AhlI	ACTAGT	2 cut(s)	143, 371
AjiI	CACGTC	1 cut(s)	190
AluBI	AGCT	5 cut(s)	30, 150, 207, 271, 329
AluI	AGCT	5 cut(s)	30, 150, 207, 271, 329
Alw26I	GTCTC	1 cut(s)	362
AoxI	GGCC	1 cut(s)	467
ApeKI	GCWGC	2 cut(s)	516, 519
ApoI	RAATTY	4 cut(s)	60, 102, 483, 508
BaeGI	GKGCMC	1 cut(s)	166
BarI	GAAGNNNNNNTAC	2 cut(s)	255, 287
BbvI	GCAGC	2 cut(s)	503, 506
BccI	CCATC	1 cut(s)	433
BcoDI	GTCTC	1 cut(s)	362
BcuI	ACTAGT	2 cut(s)	143, 371
BfaI	CTAG	2 cut(s)	144, 372
BisI	GCNGC	2 cut(s)	517, 520
BlsI	GCNGC	2 cut(s)	518, 521
BmeRI	GACNNNNNGTC	1 cut(s)	497
BmgBI	CACGTC	1 cut(s)	190
Bpu10I	CCTNAGC	1 cut(s)	330
BsaBI	GATNNNNATC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	252
Bse3DI	GCAATG	2 cut(s)	230, 420
Bse8I	GATNNNNATC	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	2 cut(s)	16, 444
BseJI	GATNNNNATC	1 cut(s)	18
BseMI	GCAATG	2 cut(s)	230, 420
BseNI	ACTGG	1 cut(s)	252
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	503, 506
BshFI	GGCC	1 cut(s)	469
BslFI	GGGAC	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	469
BsrDI	GCAATG	2 cut(s)	230, 420
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	157
Bst4CI	ACNGT	4 cut(s)	70, 158, 245, 478
BstAPI	GCANNNNNTGC	2 cut(s)	383, 419
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	1 cut(s)	330
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	2 cut(s)	16, 444
BstMAI	GTCTC	1 cut(s)	362
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 383, 410, 419
BstSLI	GKGCMC	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	503, 506
BstXI	CCANNNNNNTGG	1 cut(s)	512
BsuRI	GGCC	1 cut(s)	469
BtgI	CCRYGG	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	16, 444
BtsI	GCAGTG	2 cut(s)	111, 297
BtsIMutI	CAGTG	5 cut(s)	66, 111, 259, 297, 483
Cac8I	GCNNGC	1 cut(s)	402
CviAII	CATG	2 cut(s)	167, 364
CviJI	RGCY	7 cut(s)	30, 150, 207, 271, 329, 469, 516
CviKI_1	RGCY	7 cut(s)	30, 150, 207, 271, 329, 469, 516
DdeI	CTNAG	1 cut(s)	330
DraI	TTTAAA	1 cut(s)	58
DriI	GACNNNNNGTC	1 cut(s)	497
Eam1105I	GACNNNNNGTC	1 cut(s)	497
EcoRI	GAATTC	1 cut(s)	508
FaeI	CATG	2 cut(s)	170, 367
FaiI	YATR	9 cut(s)	19, 33, 168, 176, 186, 249, 321, 365, 410
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	2 cut(s)	166, 363
Fnu4HI	GCNGC	2 cut(s)	517, 520
FokI	GGATG	2 cut(s)	23, 451
Fsp4HI	GCNGC	2 cut(s)	517, 520
FspBI	CTAG	2 cut(s)	144, 372
GluI	GCNGC	2 cut(s)	517, 520
HaeIII	GGCC	1 cut(s)	469
Hin1II	CATG	2 cut(s)	170, 367
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	2 cut(s)	14, 355
Hpy166II	GTNNAC	2 cut(s)	265, 502
Hpy188I	TCNGA	2 cut(s)	47, 292
Hpy188III	TCNNGA	2 cut(s)	23, 430
Hpy8I	GTNNAC	2 cut(s)	265, 502
HpyCH4III	ACNGT	4 cut(s)	70, 158, 245, 478
HpyCH4IV	ACGT	3 cut(s)	127, 189, 216
HpyCH4V	TGCA	2 cut(s)	377, 481
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 383, 410, 419
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	3 cut(s)	127, 189, 216
Hsp92II	CATG	2 cut(s)	170, 367
LmnI	GCTCC	2 cut(s)	73, 397
LpnPI	CCDG	7 cut(s)	8, 102, 265, 386, 498, 510, 518
Lsp1109I	GCAGC	2 cut(s)	503, 506
MaeI	CTAG	2 cut(s)	144, 372
MaeII	ACGT	3 cut(s)	127, 189, 216
MaeIII	GTNAC	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	6 cut(s)	60, 102, 138, 237, 483, 508
MnlI	CCTC	3 cut(s)	305, 459, 482
MseI	TTAA	2 cut(s)	57, 529
MwoI	GCNNNNNNNGC	4 cut(s)	36, 383, 410, 419
NlaIII	CATG	2 cut(s)	170, 367
NmuCI	GTSAC	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	14, 355
PkrI	GCNGC	2 cut(s)	518, 521
PsiI	TTATAA	1 cut(s)	176
Psp1406I	AACGTT	1 cut(s)	127
SaqAI	TTAA	2 cut(s)	57, 529
SatI	GCNGC	2 cut(s)	517, 520
SduI	GDGCHC	1 cut(s)	166
SpeI	ACTAGT	2 cut(s)	143, 371
Sse9I	AATT	6 cut(s)	60, 102, 138, 237, 483, 508
SspMI	CTAG	2 cut(s)	144, 372
TaaI	ACNGT	4 cut(s)	70, 158, 245, 478
TaiI	ACGT	3 cut(s)	130, 192, 219
TaqI	TCGA	1 cut(s)	487
TasI	AATT	6 cut(s)	60, 102, 138, 237, 483, 508
TfiI	GAWTC	2 cut(s)	14, 355
Tru1I	TTAA	2 cut(s)	57, 529
Tru9I	TTAA	2 cut(s)	57, 529
TscAI	CASTG	5 cut(s)	73, 118, 259, 304, 483
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	2 cut(s)	516, 519
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	4 cut(s)	6, 336, 352, 470
TspRI	CASTG	5 cut(s)	73, 118, 259, 304, 483
XapI	RAATTY	4 cut(s)	60, 102, 483, 508
XspI	CTAG	2 cut(s)	144, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.