FvH4_7g26840

GTP-BINDING protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
20181876 .. 20184647
2772 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26840.t1

Sequence Viewer

Length: 609 bp
ATGAATCCTGAATATGATTACTTGTTTAAACTTTTGCTGATTGGAGACTCCGGGGTTGGAAAGTCGTGTCTGCTTCTGAGGTTTGCTGATGATTCATATCTGGACAGCTATATTAGCACAATCGGAGTTGATTTTAAAATTCGCACTGTGGAGCAAGACAGTAAAACCATCAAGCTTCAAATTTGGGATACTGCTGGACAAGAACGTTTTAGGACAATCACTAGTAGCTACTACCGTGGGGCACATGGCATTATAATAGTCTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGTTGAGTGAAATTGACCGTTACGCAAGTGAGAATGTAAACAAGCTTCTTGTTGGCAACAAATCTGACCTCACTGCTAACAAAGTAGTGTCTTATGAAACAGCTAAGGCATTTGCTGATGAGATTGGGATCCCTTTCATGGAGACTAGTGCAAAAAATGCTACAAATGTGGAGCAGGCTTTTATGGCAATGTCTGCTGACATCAAGAACAGGATGGCATCTCAACCAATGAACAATGCGAGGCAACCAACAGTGCAAATTCGAGGACAACCTGTCAACCAGAATTCTGGCTGCTGCTCATCTTAA

Protein Analysis

203

Amino Acids

22.63

Weight (kDa)

5.26

Isoelectric Point (pI)

33.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 9 - 129 1.6e-16 ADP-ribosylation factor family
Ras PF00071 10 - 170 7.6e-68 Ras family
Roc PF08477 10 - 124 1.7e-36 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015808)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02130
fragaria_vesca FvH4_7g26840
malus_domestica MD01G1176600.v1.1 MD04G1050400.v1.1 MD07G1247800.v1.1
prunus_persica Prupe.2G271800_v2.0.a1 Prupe.2G271800_v2.0.a1
pyrus_communis pycom01g18730
rosa_chinensis RchiOBHm_Chr1g0373531
rosa_laevigata RLG00000026818
rosa_roxburghii Rroxscaffold_4G00284170
rosa_rugosa Rorug01G0377900 Rorug01G0378000
rosa_samantha Rh1CG364400
rosa_wichuraiana Rw1G034800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 254
AclI AACGTT 1 cut(s) 205
AclWI GGATC 2 cut(s) 427, 440
AcsI RAATTY 4 cut(s) 138, 180, 561, 586
AfiI CCNNNNNNNGG 1 cut(s) 442
AgsI TTSAA 2 cut(s) 179, 289
AhdI GACNNNNNGTC 1 cut(s) 575
AhlI ACTAGT 2 cut(s) 221, 449
AluBI AGCT 6 cut(s) 108, 175, 228, 285, 349, 407
AluI AGCT 6 cut(s) 108, 175, 228, 285, 349, 407
Alw26I GTCTC 2 cut(s) 39, 440
AlwI GGATC 2 cut(s) 427, 440
ApeKI GCWGC 2 cut(s) 594, 597
ApoI RAATTY 4 cut(s) 138, 180, 561, 586
AsuC2I CCSGG 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 244
BamHI GGATCC 1 cut(s) 432
BarI GAAGNNNNNNTAC 2 cut(s) 333, 365
BbvI GCAGC 2 cut(s) 581, 584
BccI CCATC 2 cut(s) 176, 511
BciVI GTATCC 1 cut(s) 181
BcnI CCSGG 1 cut(s) 52
BcoDI GTCTC 2 cut(s) 39, 440
BcuI ACTAGT 2 cut(s) 221, 449
BfaI CTAG 2 cut(s) 222, 450
BfuI GTATCC 1 cut(s) 181
BisI GCNGC 2 cut(s) 595, 598
BlsI GCNGC 2 cut(s) 596, 599
Bme1390I CCNGG 1 cut(s) 52
BmeRI GACNNNNNGTC 1 cut(s) 575
BmiI GGNNCC 1 cut(s) 434
BmrFI CCNGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 530
Bpu10I CCTNAGC 1 cut(s) 408
BpuMI CCSGG 1 cut(s) 52
BsaBI GATNNNNATC 2 cut(s) 96, 431
BsaJI CCNNGG 2 cut(s) 51, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 442
Bse3DI GCAATG 2 cut(s) 308, 498
Bse8I GATNNNNATC 2 cut(s) 96, 431
BseDI CCNNGG 2 cut(s) 51, 235
BseGI GGATG 1 cut(s) 522
BseJI GATNNNNATC 2 cut(s) 96, 431
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMI GCAATG 2 cut(s) 308, 498
BseMII CTCAG 1 cut(s) 68
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 2 cut(s) 581, 584
BsiSI CCGG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 442
BsmAI GTCTC 2 cut(s) 39, 440
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 1 cut(s) 432
BspCNI CTCAG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 434
BspPI GGATC 2 cut(s) 427, 440
BsrDI GCAATG 2 cut(s) 308, 498
BssECI CCNNGG 2 cut(s) 51, 235
BssMI GATC 1 cut(s) 432
Bst4CI ACNGT 5 cut(s) 148, 161, 236, 323, 556
BstAPI GCANNNNNTGC 2 cut(s) 461, 497
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 2 cut(s) 77, 408
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 1 cut(s) 522
BstKTI GATC 1 cut(s) 435
BstMAI GTCTC 2 cut(s) 39, 440
BstMBI GATC 1 cut(s) 432
BstMWI GCNNNNNNNGC 4 cut(s) 114, 461, 488, 497
BstSCI CCNGG 1 cut(s) 50
BstSLI GKGCMC 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 581, 584
BstX2I RGATCY 1 cut(s) 432
BstXI CCANNNNNNTGG 1 cut(s) 590
BstYI RGATCY 1 cut(s) 432
BsuI GTATCC 1 cut(s) 181
BtgI CCRYGG 1 cut(s) 235
BtsCI GGATG 1 cut(s) 522
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 3 cut(s) 144, 375, 561
Cac8I GCNNGC 1 cut(s) 480
CviAII CATG 2 cut(s) 245, 442
CviJI RGCY 8 cut(s) 108, 175, 228, 285, 349, 407, 482, 594
CviKI_1 RGCY 8 cut(s) 108, 175, 228, 285, 349, 407, 482, 594
DdeI CTNAG 2 cut(s) 77, 408
DpnI GATC 1 cut(s) 434
DpnII GATC 1 cut(s) 432
DraI TTTAAA 2 cut(s) 28, 136
DriI GACNNNNNGTC 1 cut(s) 575
Eam1105I GACNNNNNGTC 1 cut(s) 575
EcoRI GAATTC 1 cut(s) 586
FaeI CATG 2 cut(s) 248, 445
FaiI YATR 9 cut(s) 15, 97, 111, 246, 254, 264, 399, 443, 488
FatI CATG 2 cut(s) 244, 441
Fnu4HI GCNGC 2 cut(s) 595, 598
FokI GGATG 1 cut(s) 529
Fsp4HI GCNGC 2 cut(s) 595, 598
FspBI CTAG 2 cut(s) 222, 450
GluI GCNGC 2 cut(s) 595, 598
HapII CCGG 1 cut(s) 51
Hin1II CATG 2 cut(s) 248, 445
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HindIII AAGCTT 2 cut(s) 173, 347
HinfI GANTC 3 cut(s) 4, 47, 92
HpaII CCGG 1 cut(s) 51
Hpy166II GTNNAC 2 cut(s) 343, 580
Hpy188I TCNGA 3 cut(s) 78, 125, 370
Hpy188III TCNNGA 3 cut(s) 8, 101, 508
Hpy8I GTNNAC 2 cut(s) 343, 580
HpyCH4III ACNGT 5 cut(s) 148, 161, 236, 323, 556
HpyCH4IV ACGT 2 cut(s) 205, 294
HpyCH4V TGCA 2 cut(s) 455, 559
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 461, 488, 497
HpyF3I CTNAG 2 cut(s) 77, 408
HpySE526I ACGT 2 cut(s) 205, 294
Hsp92II CATG 2 cut(s) 248, 445
Kzo9I GATC 1 cut(s) 432
LmnI GCTCC 2 cut(s) 151, 475
LpnPI CCDG 9 cut(s) 21, 64, 86, 180, 464, 499, 576, 588, 596
Lsp1109I GCAGC 2 cut(s) 581, 584
LweI GCATC 1 cut(s) 530
MaeI CTAG 2 cut(s) 222, 450
MaeII ACGT 2 cut(s) 205, 294
MaeIII GTNAC 2 cut(s) 268, 323
MalI GATC 1 cut(s) 434
MboI GATC 1 cut(s) 432
MflI RGATCY 1 cut(s) 432
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 5 cut(s) 138, 180, 315, 561, 586
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 4 cut(s) 72, 383, 537, 560
MseI TTAA 3 cut(s) 27, 135, 607
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 52
MssI GTTTAAAC 1 cut(s) 28
MwoI GCNNNNNNNGC 4 cut(s) 114, 461, 488, 497
NciI CCSGG 1 cut(s) 52
NdeII GATC 1 cut(s) 432
NlaIII CATG 2 cut(s) 248, 445
NlaIV GGNNCC 1 cut(s) 434
NmuCI GTSAC 1 cut(s) 268
PfeI GAWTC 2 cut(s) 4, 92
PkrI GCNGC 2 cut(s) 596, 599
PleI GAGTC 1 cut(s) 41
PmeI GTTTAAAC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 41
PsiI TTATAA 1 cut(s) 254
Psp1406I AACGTT 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 434
PsuI RGATCY 1 cut(s) 432
SaqAI TTAA 3 cut(s) 27, 135, 607
SatI GCNGC 2 cut(s) 595, 598
Sau3AI GATC 1 cut(s) 432
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 52
SduI GDGCHC 1 cut(s) 244
SfaNI GCATC 1 cut(s) 530
SpeI ACTAGT 2 cut(s) 221, 449
Sse9I AATT 5 cut(s) 138, 180, 315, 561, 586
SspMI CTAG 2 cut(s) 222, 450
StyD4I CCNGG 1 cut(s) 50
TaaI ACNGT 5 cut(s) 148, 161, 236, 323, 556
TaiI ACGT 2 cut(s) 208, 297
TaqI TCGA 1 cut(s) 565
TasI AATT 5 cut(s) 138, 180, 315, 561, 586
TfiI GAWTC 2 cut(s) 4, 92
Tru1I TTAA 3 cut(s) 27, 135, 607
Tru9I TTAA 3 cut(s) 27, 135, 607
TscAI CASTG 3 cut(s) 151, 382, 561
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 2 cut(s) 594, 597
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 5 cut(s) 17, 84, 414, 430, 548
TspRI CASTG 3 cut(s) 151, 382, 561
XapI RAATTY 4 cut(s) 138, 180, 561, 586
XspI CTAG 2 cut(s) 222, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.