Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015160

Physical Location & Seq

Genomic Coordinates Reverse (-)

754261 .. 756303

Gene Structure 2043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGATCTGCTCAGGGAAGAGATTCTGAAGAAACGTAAGAGTCTAGCTGAGGAATCTGGTGGTAAGAAGTTCTTCAAGCGGTCTGAGATCGAGCAGAAGAAAATCCAGAAGCTTCGAGAGGAAGAACGACGCGAGCACGAGCTTAAGGCTCAGCGGAGAGCCGCCGCCGCCGCTTCCGGTGGAGATGGAAAATCATCCGGCTCTGCTCCTGGTTCTTCTAACGCAGCTACGTCTGCGTCTTCCAAATCCTCTGCATCGGACGCTGCTGCTATCGCCGATTCAAAAGCCCTAACCGACGAAAACCTAATTCTCCCGAGGCAGGAAGTGATTCGTCGTTTGAGATTCCTTAAGCAGCCGATGACTCTCTTCGGAGAAGATGATCAATCGCGGCTCGATCGACTCAAGTACGTTTTGAAGGAAGGATTGTTCGAGGTTGATAGTGATATGACTGAAGGACAGACGAATGATTTCTTGCGTGACATCGCAGAGCTTAAGAAGAGGCAGAAGAGTGGTATGATGGGAGATAGGAAGAGGAAGAGTAGAGATGAGAGAGGAAGAGACGAAGGTGATAGAGGTGAAACAAGGGAAGATGAACTTAGTGGTGGTGAATCGAGTGATGTTGATGCTGATAAAGATATGAAACGTTTGAAAGCTAACTTTGAGGATCTATGCGATGAGGATAAGATCCTTGTGTTTTATAAGAAGCTGTTGATTGAATGGAAACAGGAGCTTGATGCGATGGAGAACACTGAGAGGAGAACTGCAAAAGGGAAACAGATGGTAGCCACTTTTAAGCAGTGTGCTAGGTATCTAGTTCCTCTCTTCAACTTATGCAGGAAGAAGGGTTTACCAGCTGACATTCGTCAAGCTTTAATGGTGATGGTTAACCACTGCATAAAGCGAGACTACCTTGCTGCAATGGACCACTACATCAAACTAGCTATCGGGAACGCGCCATGGCCTATTGGAGTGACTATGGTTGGTATTCACGAACGTTCAGCTCGAGAGAAGATTTACACCAACAGTGTTGCTCACATCATGAACGATGAAACCACTCGCAAGTATCTTCAGTCAGTTAAAAGACTGATGACTTTCTGTCAAAGACGTTATCCAACTATGCCTTCTAAAGCCGTTGAGTTCAATAGCTTAGCCAACGGAAGCGACTTACAGTCTTTGCTAGCCGAAGAGAGATTCTTTGGTGGTAATCGTGAACAGGTCTCAGAGGAGAGACTCCGGCTCATGCCTTCTCAGAGCGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000350 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008298 GO:0008380 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0046700 GO:0048519 GO:0050789 GO:0051179 GO:0051641 GO:0060255 GO:0065003 GO:0065007 GO:0070727 GO:0071020 GO:0071021 GO:0071025 GO:0071027 GO:0071028 GO:0071030 GO:0071033 GO:0071048 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP4 Prp18

Protein Analysis

420

Amino Acids

47.88

Weight (kDa)

9.09

Isoelectric Point (pI)

55.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP4	PF08799	109 - 136	4.7e-11	pre-mRNA processing factor 4 (PRP4) like
Prp18	PF02840	231 - 372	5.9e-61	Prp18 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03140
fragaria_vesca	FvH4_2g23380
malus_domestica	MD03G1263300.v1.1 MD11G1284100.v1.1
prunus_persica	Prupe.8G239700_v2.0.a1
pyrus_communis	pycom03g21080
rosa_chinensis	RchiOBHm_Chr6g0290841
rosa_laevigata	RLG00000012169
rosa_multiflora	Rmu_sc0009276.1_g000007
rosa_roxburghii	Rroxscaffold_7G00176700
rosa_rugosa	Rorug06G0215100
rosa_samantha	Rh6AG325700 Rh6BG333400 Rh6CG339100 Rh6DG326400
rosa_wichuraiana	Rw6G028320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	699
AccII	CGCG	3 cut(s)	132, 388, 953
AciI	CCGC	7 cut(s)	79, 154, 162, 165, 168, 171, 388
AclI	AACGTT	2 cut(s)	643, 994
AclWI	GGATC	3 cut(s)	12, 672, 679
AcuI	CTGAAG	3 cut(s)	47, 471, 1052
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	319
AflII	CTTAAG	3 cut(s)	143, 347, 491
AgsI	TTSAA	7 cut(s)	76, 282, 415, 649, 716, 826, 1141
AhdI	GACNNNNNGTC	2 cut(s)	1095, 1168
AjnI	CCWGG	1 cut(s)	208
AjuI	GAANNNNNNNTTGG	2 cut(s)	1105, 1137
AloI	GAACNNNNNNTCC	2 cut(s)	410, 442
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	4 cut(s)	552, 897, 1222, 1222
AlwI	GGATC	3 cut(s)	12, 672, 679
Ama87I	CYCGRG	2 cut(s)	313, 1002
AoxI	GGCC	1 cut(s)	959
ApeKI	GCWGC	5 cut(s)	224, 263, 266, 352, 914
Asp700I	GAANNNNTTC	4 cut(s)	21, 71, 327, 467
AspLEI	GCGC	1 cut(s)	955
AspS9I	GGNCC	1 cut(s)	922
AsuHPI	GGTGA	4 cut(s)	578, 587, 617, 889
AsuNHI	GCTAGC	1 cut(s)	1177
AvaI	CYCGRG	2 cut(s)	313, 1002
AvaII	GGWCC	1 cut(s)	922
BauI	CACGAG	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	138
BbvCI	CCTCAGC	1 cut(s)	48
BbvI	GCAGC	5 cut(s)	236, 250, 253, 364, 901
BccI	CCATC	5 cut(s)	179, 511, 733, 772, 874
BceAI	ACGGC	1 cut(s)	1115
BciT130I	CCWGG	1 cut(s)	210
BclI	TGATCA	1 cut(s)	379
BcoDI	GTCTC	4 cut(s)	552, 897, 1222, 1222
BfaI	CTAG	6 cut(s)	44, 804, 812, 938, 1178, 1261
BfrI	CTTAAG	3 cut(s)	143, 347, 491
BlpI	GCTNAGC	2 cut(s)	150, 1147
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	922
BmeRI	GACNNNNNGTC	2 cut(s)	1095, 1168
BmeT110I	CYCGRG	2 cut(s)	313, 1002
BmgT120I	GGNCC	1 cut(s)	922
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	3 cut(s)	263, 613, 724
BmtI	GCTAGC	1 cut(s)	1181
BoxI	GACNNNNGTC	1 cut(s)	861
BpiI	GAAGAC	1 cut(s)	231
Bpu10I	CCTNAGC	2 cut(s)	11, 48
Bpu1102I	GCTNAGC	2 cut(s)	150, 1147
BpuEI	CTTGAG	1 cut(s)	386
BsaI	GGTCTC	1 cut(s)	1222
BsaJI	CCNNGG	2 cut(s)	314, 956
BsaWI	WCCGGW	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse3DI	GCAATG	1 cut(s)	924
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	314, 956
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	7 cut(s)	25, 39, 75, 164, 741, 1233, 1262
BseRI	GAGGAG	2 cut(s)	769, 1238
BseXI	GCAGC	5 cut(s)	236, 250, 253, 364, 901
Bsh1236I	CGCG	3 cut(s)	132, 388, 953
Bsh1285I	CGRYCG	1 cut(s)	397
BshFI	GGCC	1 cut(s)	961
BsiEI	CGRYCG	1 cut(s)	397
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	2 cut(s)	313, 1002
BsiSI	CCGG	3 cut(s)	177, 198, 1234
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	4 cut(s)	552, 897, 1222, 1222
BsmBI	CGTCTC	1 cut(s)	552
BsnI	GGCC	1 cut(s)	961
Bso31I	GGTCTC	1 cut(s)	1222
BsoBI	CYCGRG	2 cut(s)	313, 1002
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	6 cut(s)	4, 87, 379, 394, 664, 684
Bsp1720I	GCTNAGC	2 cut(s)	150, 1147
Bsp19I	CCATGG	1 cut(s)	956
BspACI	CCGC	7 cut(s)	79, 154, 162, 165, 168, 171, 388
BspANI	GGCC	1 cut(s)	961
BspCNI	CTCAG	7 cut(s)	24, 40, 76, 163, 742, 1232, 1261
BspFNI	CGCG	3 cut(s)	132, 388, 953
BspHI	TCATGA	1 cut(s)	1038
BspOI	GCTAGC	1 cut(s)	1181
BspPI	GGATC	3 cut(s)	12, 672, 679
BspTI	CTTAAG	3 cut(s)	143, 347, 491
BspTNI	GGTCTC	1 cut(s)	1222
BsrDI	GCAATG	1 cut(s)	924
BssECI	CCNNGG	2 cut(s)	314, 956
BssMI	GATC	6 cut(s)	4, 87, 379, 394, 664, 684
BssSI	CACGAG	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	956
Bst2BI	CACGAG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	1025, 1170
Bst6I	CTCTTC	9 cut(s)	12, 371, 491, 500, 524, 530, 550, 827, 1179
BstAFI	CTTAAG	3 cut(s)	143, 347, 491
BstC8I	GCNNGC	2 cut(s)	134, 1179
BstDEI	CTNAG	9 cut(s)	11, 48, 84, 150, 596, 750, 1147, 1219, 1248
BstDSI	CCRYGG	1 cut(s)	956
BstF5I	GGATG	1 cut(s)	194
BstFNI	CGCG	3 cut(s)	132, 388, 953
BstHHI	GCGC	1 cut(s)	955
BstKTI	GATC	6 cut(s)	7, 90, 382, 397, 667, 687
BstMAI	GTCTC	4 cut(s)	552, 897, 1222, 1222
BstMBI	GATC	6 cut(s)	4, 87, 379, 394, 664, 684
BstMCI	CGRYCG	1 cut(s)	397
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 170, 233, 260, 272
BstNI	CCWGG	1 cut(s)	210
BstPAI	GACNNNNGTC	1 cut(s)	861
BstSCI	CCNGG	1 cut(s)	208
BstUI	CGCG	3 cut(s)	132, 388, 953
BstV1I	GCAGC	5 cut(s)	236, 250, 253, 364, 901
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	3 cut(s)	4, 664, 684
BstYI	RGATCY	3 cut(s)	4, 664, 684
BsuRI	GGCC	1 cut(s)	961
BtgI	CCRYGG	1 cut(s)	956
BtgZI	GCGATG	3 cut(s)	466, 687, 752
BtsCI	GGATG	1 cut(s)	194
BtsI	GCAGTG	2 cut(s)	803, 889
BtsIMutI	CAGTG	4 cut(s)	747, 803, 889, 1030
Cac8I	GCNNGC	2 cut(s)	134, 1179
CciI	TCATGA	1 cut(s)	1038
CfoI	GCGC	1 cut(s)	955
Cfr13I	GGNCC	1 cut(s)	922
CseI	GACGC	3 cut(s)	138, 225, 269
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	3 cut(s)	957, 1039, 1240
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	9 cut(s)	11, 48, 84, 150, 596, 750, 1147, 1219, 1248
DpnI	GATC	6 cut(s)	6, 89, 381, 396, 666, 686
DpnII	GATC	6 cut(s)	4, 87, 379, 394, 664, 684
DriI	GACNNNNNGTC	2 cut(s)	1095, 1168
Eam1104I	CTCTTC	9 cut(s)	12, 371, 491, 500, 524, 530, 550, 827, 1179
Eam1105I	GACNNNNNGTC	2 cut(s)	1095, 1168
EarI	CTCTTC	9 cut(s)	12, 371, 491, 500, 524, 530, 550, 827, 1179
Eco130I	CCWWGG	1 cut(s)	956
Eco31I	GGTCTC	1 cut(s)	1222
Eco47I	GGWCC	1 cut(s)	922
Eco57I	CTGAAG	3 cut(s)	47, 471, 1052
Eco88I	CYCGRG	2 cut(s)	313, 1002
EcoRII	CCWGG	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	956
ErhI	CCWWGG	1 cut(s)	956
Esp3I	CGTCTC	1 cut(s)	552
FaeI	CATG	3 cut(s)	960, 1042, 1243
FalI	AAGNNNNNCTT	4 cut(s)	56, 88, 579, 611
FatI	CATG	3 cut(s)	956, 1038, 1239
FbaI	TGATCA	1 cut(s)	379
FokI	GGATG	1 cut(s)	181
FspBI	CTAG	6 cut(s)	44, 804, 812, 938, 1178, 1261
GlaI	GCGC	1 cut(s)	954
HaeIII	GGCC	1 cut(s)	961
HapII	CCGG	3 cut(s)	177, 198, 1234
HgaI	GACGC	3 cut(s)	138, 225, 269
HhaI	GCGC	1 cut(s)	955
Hin1II	CATG	3 cut(s)	960, 1042, 1243
Hin6I	GCGC	1 cut(s)	953
HinP1I	GCGC	1 cut(s)	953
HincII	GTYRAC	1 cut(s)	886
HindII	GTYRAC	1 cut(s)	886
HindIII	AAGCTT	2 cut(s)	110, 867
HpaI	GTTAAC	1 cut(s)	886
HpaII	CCGG	3 cut(s)	177, 198, 1234
HphI	GGTGA	4 cut(s)	578, 587, 617, 889
Hpy166II	GTNNAC	3 cut(s)	848, 886, 1211
Hpy188I	TCNGA	6 cut(s)	27, 85, 259, 371, 1222, 1251
Hpy188III	TCNNGA	8 cut(s)	106, 116, 313, 946, 989, 1004, 1039, 1208
Hpy8I	GTNNAC	3 cut(s)	848, 886, 1211
Hpy99I	CGWCG	3 cut(s)	132, 299, 336
HpyAV	CCTTC	7 cut(s)	409, 413, 446, 557, 835, 1131, 1254
HpyCH4III	ACNGT	2 cut(s)	1025, 1170
HpyCH4IV	ACGT	6 cut(s)	34, 230, 408, 643, 994, 1105
HpyCH4V	TGCA	5 cut(s)	254, 764, 834, 894, 917
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 170, 233, 260, 272
HpyF3I	CTNAG	9 cut(s)	11, 48, 84, 150, 596, 750, 1147, 1219, 1248
HpySE526I	ACGT	6 cut(s)	34, 230, 408, 643, 994, 1105
Hsp92II	CATG	3 cut(s)	960, 1042, 1243
HspAI	GCGC	1 cut(s)	953
Ksp22I	TGATCA	1 cut(s)	379
KspAI	GTTAAC	1 cut(s)	886
Kzo9I	GATC	6 cut(s)	4, 87, 379, 394, 664, 684
LmnI	GCTCC	2 cut(s)	211, 727
Lsp1109I	GCAGC	5 cut(s)	236, 250, 253, 364, 901
LweI	GCATC	3 cut(s)	263, 613, 724
MaeI	CTAG	6 cut(s)	44, 804, 812, 938, 1178, 1261
MaeII	ACGT	6 cut(s)	34, 230, 408, 643, 994, 1105
MaeIII	GTNAC	2 cut(s)	476, 970
MalI	GATC	6 cut(s)	6, 89, 381, 396, 666, 686
MboI	GATC	6 cut(s)	4, 87, 379, 394, 664, 684
MflI	RGATCY	3 cut(s)	4, 664, 684
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	1 cut(s)	306
MlyI	GAGTC	4 cut(s)	49, 355, 393, 1224
MmeI	TCCRAC	1 cut(s)	1136
MroXI	GAANNNNTTC	4 cut(s)	21, 71, 327, 467
MseI	TTAA	7 cut(s)	144, 348, 492, 792, 872, 885, 1077
MspA1I	CMGCKG	2 cut(s)	154, 854
MspCI	CTTAAG	3 cut(s)	143, 347, 491
MspI	CCGG	3 cut(s)	177, 198, 1234
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	3 cut(s)	132, 388, 953
MwoI	GCNNNNNNNGC	5 cut(s)	167, 170, 233, 260, 272
NcoI	CCATGG	1 cut(s)	956
NdeII	GATC	6 cut(s)	4, 87, 379, 394, 664, 684
NheI	GCTAGC	1 cut(s)	1177
NlaIII	CATG	3 cut(s)	960, 1042, 1243
NmuCI	GTSAC	2 cut(s)	476, 970
PaeR7I	CTCGAG	1 cut(s)	1002
PagI	TCATGA	1 cut(s)	1038
PcsI	WCGNNNNNNNCGW	1 cut(s)	1000
PdmI	GAANNNNTTC	4 cut(s)	21, 71, 327, 467
PfeI	GAWTC	7 cut(s)	22, 53, 278, 328, 342, 608, 1191
Ple19I	CGATCG	1 cut(s)	397
PleI	GAGTC	4 cut(s)	48, 355, 393, 1224
PpsI	GAGTC	4 cut(s)	48, 355, 393, 1224
PshAI	GACNNNNGTC	1 cut(s)	861
PsiI	TTATAA	1 cut(s)	699
Psp1406I	AACGTT	2 cut(s)	643, 994
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	922
PsuI	RGATCY	3 cut(s)	4, 664, 684
PvuI	CGATCG	1 cut(s)	397
PvuII	CAGCTG	1 cut(s)	854
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SaqAI	TTAA	7 cut(s)	144, 348, 492, 792, 872, 885, 1077
Sau3AI	GATC	6 cut(s)	4, 87, 379, 394, 664, 684
Sau96I	GGNCC	1 cut(s)	922
SchI	GAGTC	4 cut(s)	49, 355, 393, 1224
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	138
SfaNI	GCATC	3 cut(s)	263, 613, 724
Sfr274I	CTCGAG	1 cut(s)	1002
SinI	GGWCC	1 cut(s)	922
SlaI	CTCGAG	1 cut(s)	1002
SmlI	CTYRAG	5 cut(s)	143, 347, 401, 491, 1002
SmoI	CTYRAG	5 cut(s)	143, 347, 401, 491, 1002
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	7 cut(s)	79, 154, 162, 165, 168, 171, 388
SspMI	CTAG	6 cut(s)	44, 804, 812, 938, 1178, 1261
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	956
TaaI	ACNGT	2 cut(s)	1025, 1170
TaiI	ACGT	6 cut(s)	37, 233, 411, 646, 997, 1108
TaqI	TCGA	7 cut(s)	90, 115, 393, 397, 429, 611, 1003
TasI	AATT	1 cut(s)	306
TauI	GCSGC	5 cut(s)	164, 167, 170, 173, 391
TfiI	GAWTC	7 cut(s)	22, 53, 278, 328, 342, 608, 1191
Tru1I	TTAA	7 cut(s)	144, 348, 492, 792, 872, 885, 1077
Tru9I	TTAA	7 cut(s)	144, 348, 492, 792, 872, 885, 1077
TscAI	CASTG	4 cut(s)	754, 803, 896, 1030
TseFI	GTSAC	2 cut(s)	476, 970
TseI	GCWGC	5 cut(s)	224, 263, 266, 352, 914
Tsp45I	GTSAC	2 cut(s)	476, 970
TspDTI	ATGAA	4 cut(s)	606, 653, 1055, 1062
TspGWI	ACGGA	1 cut(s)	1170
TspRI	CASTG	4 cut(s)	754, 803, 896, 1030
Vha464I	CTTAAG	3 cut(s)	143, 347, 491
VpaK11BI	GGWCC	1 cut(s)	922
XhoI	CTCGAG	1 cut(s)	1002
XmnI	GAANNNNTTC	4 cut(s)	21, 71, 327, 467
XspI	CTAG	6 cut(s)	44, 804, 812, 938, 1178, 1261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.