Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0015160

Physical Location & Seq

Genomic Coordinates Forward (+)

34337812 .. 34339108

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0215100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTGGGCCAAGACTGAATTGATGGATGACGCCACAATCCGCACAACATTTGGTGGGGAAATTTTCGGCCATTCTAGGAAAGCCGTCATCTTTAGAAGGGATATCTATAACATGGCTAACATGCTGGAAGTATATGGAGGAGTCATTGTTTTTTACATGAGCTACCTTTATGGAGTCCTGAAGAAGTCTAAGATGCTTGATATGGTTTGCTTTATCTACCCTGCACACACCGGTATAATTGGGTGTGGAAATCCCACTGAACGAGCACGGTCTATGTCAAATCGGTACATGTTAGGGAAACCGGGGCAGATATTTTTGGTTCCATATAACTCAGGGTATTGCTCATTGGATGTTGTCGTGGTGAACCCGGATGAAGAAGTCGTGCATTTCATGGATCCGCTAAAAGGCGACTTTGTGCTGGTGAATGGAAAACTATTGTCGACAAGTAACTCCATTAAAATCTTCAATGCCCAAAAGGGTAGGAAAGGAAGGAAAATAATCCAATGGAAGAATCTTGCTGATATTTCGGAGCAAACTGATTCTAAGACTTGTGGTTATTTCGTCATGCTTTATATGAAAGAAATTGTGGAGGACAAGAACTTGGAGTTTGCTACCAAGTGGGAAAGGAAATCAAATCTTGCTTACACACAGAAGGATATTGATGTGGTTCGAGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000350 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008298 GO:0008380 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0046700 GO:0048519 GO:0050789 GO:0051179 GO:0051641 GO:0060255 GO:0065003 GO:0065007 GO:0070727 GO:0071020 GO:0071021 GO:0071025 GO:0071027 GO:0071028 GO:0071030 GO:0071033 GO:0071048 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP4 Prp18

Protein Analysis

226

Amino Acids

25.84

Weight (kDa)

8.89

Isoelectric Point (pI)

26.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03140
fragaria_vesca	FvH4_2g23380
malus_domestica	MD03G1263300.v1.1 MD11G1284100.v1.1
prunus_persica	Prupe.8G239700_v2.0.a1
pyrus_communis	pycom03g21080
rosa_chinensis	RchiOBHm_Chr6g0290841
rosa_laevigata	RLG00000012169
rosa_multiflora	Rmu_sc0009276.1_g000007
rosa_roxburghii	Rroxscaffold_7G00176700
rosa_rugosa	Rorug06G0215100
rosa_samantha	Rh6AG325700 Rh6BG333400 Rh6CG339100 Rh6DG326400
rosa_wichuraiana	Rw6G028320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	440
AciI	CCGC	2 cut(s)	40, 398
AclWI	GGATC	2 cut(s)	389, 402
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	60
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	404
AflIII	ACRYGT	1 cut(s)	288
AgeI	ACCGGT	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	466
AluBI	AGCT	2 cut(s)	162, 674
AluI	AGCT	2 cut(s)	162, 674
Alw21I	GWGCWC	1 cut(s)	268
AlwI	GGATC	2 cut(s)	389, 402
AoxI	GGCC	2 cut(s)	6, 67
ApoI	RAATTY	1 cut(s)	60
AsiGI	ACCGGT	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	6
AsuC2I	CCSGG	2 cut(s)	303, 368
AsuHPI	GGTGA	2 cut(s)	373, 433
BamHI	GGATCC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	268
BccI	CCATC	1 cut(s)	16
BceAI	ACGGC	1 cut(s)	68
BcnI	CCSGG	2 cut(s)	303, 368
BfaI	CTAG	1 cut(s)	75
Bme1390I	CCNGG	2 cut(s)	303, 368
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	2 cut(s)	321, 396
BmrFI	CCNGG	2 cut(s)	303, 368
BmsI	GCATC	1 cut(s)	183
BpuMI	CCSGG	2 cut(s)	303, 368
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	302
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse118I	RCCGGY	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	3 cut(s)	31, 355, 376
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMII	CTCAG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	8, 69
BshTI	ACCGGT	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	268
BsiSI	CCGG	3 cut(s)	231, 302, 368
BslI	CCNNNNNNNGG	1 cut(s)	404
BsnI	GGCC	2 cut(s)	8, 69
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	394
BspACI	CCGC	2 cut(s)	40, 398
BspANI	GGCC	2 cut(s)	8, 69
BspCNI	CTCAG	1 cut(s)	344
BspLI	GGNNCC	2 cut(s)	321, 396
BspPI	GGATC	2 cut(s)	389, 402
BsrFI	RCCGGY	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	1 cut(s)	394
BssNI	GRCGYC	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	30
BstDEI	CTNAG	3 cut(s)	189, 331, 543
BstF5I	GGATG	3 cut(s)	31, 355, 376
BstKTI	GATC	1 cut(s)	397
BstMBI	GATC	1 cut(s)	394
BstNSI	RCATGY	2 cut(s)	124, 292
BstSCI	CCNGG	2 cut(s)	301, 366
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	8, 69
BtsCI	GGATG	3 cut(s)	31, 355, 376
BtsIMutI	CAGTG	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	6
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	286
CspAI	ACCGGT	1 cut(s)	230
CviAII	CATG	6 cut(s)	112, 121, 157, 289, 391, 565
CviJI	RGCY	6 cut(s)	8, 69, 83, 116, 162, 674
CviKI_1	RGCY	6 cut(s)	8, 69, 83, 116, 162, 674
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	3 cut(s)	189, 331, 543
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
EaeI	YGGCCR	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	200
EcoRV	GATATC	1 cut(s)	103
FaeI	CATG	6 cut(s)	115, 124, 160, 292, 394, 568
FatI	CATG	6 cut(s)	111, 120, 156, 288, 390, 564
FblI	GTMKAC	1 cut(s)	440
FokI	GGATG	3 cut(s)	38, 362, 383
FspBI	CTAG	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	8, 69
HapII	CCGG	3 cut(s)	231, 302, 368
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	6 cut(s)	115, 124, 160, 292, 394, 568
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	4 cut(s)	141, 174, 511, 539
HpaII	CCGG	3 cut(s)	231, 302, 368
HphI	GGTGA	2 cut(s)	373, 433
Hpy166II	GTNNAC	2 cut(s)	364, 441
Hpy188I	TCNGA	1 cut(s)	529
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	2 cut(s)	364, 441
HpyAV	CCTTC	3 cut(s)	90, 483, 646
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4V	TGCA	2 cut(s)	224, 385
HpyF3I	CTNAG	3 cut(s)	189, 331, 543
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	6 cut(s)	115, 124, 160, 292, 394, 568
Kzo9I	GATC	1 cut(s)	394
LmnI	GCTCC	1 cut(s)	529
LpnPI	CCDG	8 cut(s)	110, 191, 234, 244, 315, 318, 381, 404
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	4 cut(s)	193, 386, 454, 520
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	4 cut(s)	17, 60, 237, 582
MlyI	GAGTC	2 cut(s)	150, 183
MnlI	CCTC	2 cut(s)	131, 583
MseI	TTAA	1 cut(s)	456
MspI	CCGG	3 cut(s)	231, 302, 368
MspR9I	CCNGG	2 cut(s)	303, 368
NciI	CCSGG	2 cut(s)	303, 368
NdeII	GATC	1 cut(s)	394
NlaIII	CATG	6 cut(s)	115, 124, 160, 292, 394, 568
NlaIV	GGNNCC	2 cut(s)	321, 396
NspI	RCATGY	2 cut(s)	124, 292
PciI	ACATGT	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	511, 539
PinAI	ACCGGT	1 cut(s)	230
PleI	GAGTC	2 cut(s)	149, 182
PpsI	GAGTC	2 cut(s)	149, 182
PscI	ACATGT	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	321, 396
PspPI	GGNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SalI	GTCGAC	1 cut(s)	439
SaqAI	TTAA	1 cut(s)	456
Sau3AI	GATC	1 cut(s)	394
Sau96I	GGNCC	1 cut(s)	6
SchI	GAGTC	2 cut(s)	150, 183
ScrFI	CCNGG	2 cut(s)	303, 368
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	3 cut(s)	164, 168, 676
SfaNI	GCATC	1 cut(s)	183
Sse9I	AATT	4 cut(s)	17, 60, 237, 582
SsiI	CCGC	2 cut(s)	40, 398
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	301, 366
TaaI	ACNGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	440, 670
TasI	AATT	4 cut(s)	17, 60, 237, 582
TfiI	GAWTC	2 cut(s)	511, 539
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	379, 387, 590
TspRI	CASTG	1 cut(s)	262
XapI	RAATTY	1 cut(s)	60
XceI	RCATGY	2 cut(s)	124, 292
XmiI	GTMKAC	1 cut(s)	440
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.