Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0015160

Physical Location & Seq

Genomic Coordinates Reverse (-)

34904800 .. 34906807

Gene Structure 2008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1263300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGACCTGCTGAAGGCAGAAATCGCCAAGAAACGGCAGAGGCTCGAAGAAGACACCGGCGGCAAGCGATTCTTCAAGCGTTCCGAGATCGAGCAGAAGCAAATCCAGAAGCTTCGGGAGCAAGAGAAGCGCGAATTAGAAGCCAAAGCCCAGCGCCAAGCCGCCGCCTCCAACTCCGCCTCCGCAAGCGGCTCTTCCGCCGCTAAATCAAACTCTAATTCCGCCGCAGCCTCATCCTCCGGCACCACATCCTCCAACGCCGCTGCGTCTAAGTCGTTAACCGATGAGCAGAACATCGACAAGATGAACCTTCCGAAACAGGAGGTCGTCCGCCGGCTCCGGTTTCTCAAGCAGCCGATCACTCTCTTTGGCGAGGATGATGATGCCCGGCTCGACCGGCTCAAGTACGTGCTGAAGGCCGGGTTGTTCGAGGTCGACAGTGACATGACGGAGGGGCAGACGAACGATTTCCTTCGCGATATTGCAGAGCTGAGGAAGCGGCAGAAGTCGGGGCTTGTGAGCAAGCGGCAGAAGACGGAGGTTGATGGCGGTGTGGAAGATGGCGAGGGCGGGGTCCGGGAAGACGATTTGAGCGCAGATGGGTGCTCGAGCGGCGTCGATGCTGATAAGGATTTGAAGCGAATGAAGACGAATTTCGAGGAGCTGTGTGATGAAGATAAGATCTTGGTGTTCTTCAAGAAGCTGTTGAATGAATGGAACCAGGAGCTGCGTGAGATGCCGGATGCGGAGAGGAGAACTGCTAAGGGGAAGTCCATGGTTGCTACATTCAAGCAGTGCGCACGCTACTTGCATCCTCTTTTCAAGTTCTGCAGGAAGAAGATCCTTCAAGATGATATTCGCATAGCATTGATGGTGGTGGTTCGGTGCTGCATGAAGCGAGACTACCTAGCTGCAATGGACCAGTACATCAAGCTGGCTATCGGGAATGCACCATGGCCAATTGGTGTCACTATGGTTGGCATCCACGAACGTTCAGCTCGCGAGAAGATCTACACCAACAGTGTGGCTCATATCATGAATGACGAGACAACTCGGAAATACTTGCAGTCAATCAAGAGATTGATGACCTTCTGCCAACGACGCTACCCAGCCATGCCTTCAAAAGCTGTGGAGTTCAACAGCTTGGCTAATGGTAGCGACTTGCAGTCTCTGCTAGCATCGGAGGAGAGGGCGGCCGCCAGCGGAAATCAAGCCTCAGACGAAAGGCTTCTGCTAATGCCAGCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000350 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008298 GO:0008380 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0046700 GO:0048519 GO:0050789 GO:0051179 GO:0051641 GO:0060255 GO:0065003 GO:0065007 GO:0070727 GO:0071020 GO:0071021 GO:0071025 GO:0071027 GO:0071028 GO:0071030 GO:0071033 GO:0071048 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP4 Prp18

Protein Analysis

417

Amino Acids

46.83

Weight (kDa)

9.03

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP4	PF08799	109 - 136	1.5e-11	pre-mRNA processing factor 4 (PRP4) like
Prp18	PF02840	230 - 370	3.8e-61	Prp18 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03140
fragaria_vesca	FvH4_2g23380
malus_domestica	MD03G1263300.v1.1 MD11G1284100.v1.1
prunus_persica	Prupe.8G239700_v2.0.a1
pyrus_communis	pycom03g21080
rosa_chinensis	RchiOBHm_Chr6g0290841
rosa_laevigata	RLG00000012169
rosa_multiflora	Rmu_sc0009276.1_g000007
rosa_roxburghii	Rroxscaffold_7G00176700
rosa_rugosa	Rorug06G0215100
rosa_samantha	Rh6AG325700 Rh6BG333400 Rh6CG339100 Rh6DG326400
rosa_wichuraiana	Rw6G028320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	799
Acc36I	ACCTGC	1 cut(s)	15
AccB1I	GGYRCC	1 cut(s)	242
AccBSI	CCGCTC	1 cut(s)	612
AccI	GTMKAC	1 cut(s)	435
AccII	CGCG	3 cut(s)	132, 477, 1002
AclI	AACGTT	1 cut(s)	991
AclWI	GGATC	1 cut(s)	835
AcoI	YGGCCR	2 cut(s)	956, 1194
AcsI	RAATTY	1 cut(s)	652
AcuI	CTGAAG	2 cut(s)	32, 434
AcyI	GRCGYC	1 cut(s)	615
AfaI	GTAC	2 cut(s)	407, 926
AfiI	CCNNNNNNNGG	2 cut(s)	13, 33
AgsI	TTSAA	9 cut(s)	76, 637, 697, 709, 790, 823, 848, 1122, 1138
AhdI	GACNNNNNGTC	1 cut(s)	1165
AjnI	CCWGG	1 cut(s)	720
Alw21I	GWGCWC	1 cut(s)	608
Alw26I	GTCTC	3 cut(s)	894, 1040, 1173
AlwI	GGATC	1 cut(s)	835
AlwNI	CAGNNNCTG	2 cut(s)	727, 1171
Ama87I	CYCGRG	1 cut(s)	607
AoxI	GGCC	3 cut(s)	417, 956, 1194
ApeKI	GCWGC	6 cut(s)	227, 263, 352, 727, 888, 911
ApoI	RAATTY	1 cut(s)	652
Asp700I	GAANNNNTTC	2 cut(s)	467, 1227
AspLEI	GCGC	4 cut(s)	132, 156, 596, 800
AspS9I	GGNCC	3 cut(s)	4, 574, 919
AsuC2I	CCSGG	3 cut(s)	388, 421, 578
AsuNHI	GCTAGC	1 cut(s)	1174
AvaI	CYCGRG	1 cut(s)	607
AvaII	GGWCC	3 cut(s)	4, 574, 919
BalI	TGGCCA	1 cut(s)	958
BanI	GGYRCC	1 cut(s)	242
BarI	GAAGNNNNNNTAC	2 cut(s)	887, 919
BbsI	GAAGAC	4 cut(s)	57, 539, 588, 653
Bbv12I	GWGCWC	1 cut(s)	608
BbvCI	CCTCAGC	1 cut(s)	491
BbvI	GCAGC	6 cut(s)	239, 250, 364, 714, 875, 898
BccI	CCATC	4 cut(s)	539, 554, 593, 865
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	722
BcnI	CCSGG	3 cut(s)	388, 421, 578
BcoDI	GTCTC	3 cut(s)	894, 1040, 1173
BfaI	CTAG	2 cut(s)	908, 1175
BfmI	CTRYAG	1 cut(s)	829
BfoI	RGCGCY	1 cut(s)	157
BfuAI	ACCTGC	1 cut(s)	15
BglII	AGATCT	2 cut(s)	681, 1008
Bme1390I	CCNGG	4 cut(s)	388, 421, 578, 722
Bme18I	GGWCC	3 cut(s)	4, 574, 919
BmeRI	GACNNNNNGTC	1 cut(s)	1165
BmeT110I	CYCGRG	1 cut(s)	607
BmgT120I	GGNCC	3 cut(s)	4, 574, 919
BmiI	GGNNCC	4 cut(s)	244, 338, 575, 719
BmrFI	CCNGG	4 cut(s)	388, 421, 578, 722
BmsI	GCATC	7 cut(s)	373, 610, 726, 733, 820, 990, 1187
BmtI	GCTAGC	1 cut(s)	1178
BpiI	GAAGAC	4 cut(s)	57, 539, 588, 653
Bpu10I	CCTNAGC	2 cut(s)	491, 762
BpuEI	CTTGAG	2 cut(s)	332, 386
BpuMI	CCSGG	3 cut(s)	388, 421, 578
BsaAI	YACGTR	1 cut(s)	409
BsaHI	GRCGYC	1 cut(s)	615
BsaJI	CCNNGG	2 cut(s)	774, 953
BsaWI	WCCGGW	1 cut(s)	339
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 33
Bse118I	RCCGGY	3 cut(s)	56, 333, 396
Bse1I	ACTGG	1 cut(s)	922
Bse3DI	GCAATG	1 cut(s)	921
BseBI	CCWGG	1 cut(s)	722
BseDI	CCNNGG	2 cut(s)	774, 953
BseGI	GGATG	6 cut(s)	233, 248, 382, 748, 811, 981
BseLI	CCNNNNNNNGG	2 cut(s)	13, 33
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	2 cut(s)	482, 1230
BseNI	ACTGG	1 cut(s)	922
BseRI	GAGGAG	3 cut(s)	674, 766, 1199
BseX3I	CGGCCG	1 cut(s)	1194
BseXI	GCAGC	6 cut(s)	239, 250, 364, 714, 875, 898
BseYI	CCCAGC	2 cut(s)	150, 1108
Bsh1236I	CGCG	3 cut(s)	132, 477, 1002
Bsh1285I	CGRYCG	2 cut(s)	397, 1197
BshFI	GGCC	3 cut(s)	419, 958, 1196
BshNI	GGYRCC	1 cut(s)	242
BsiEI	CGRYCG	2 cut(s)	397, 1197
BsiHKAI	GWGCWC	1 cut(s)	608
BsiHKCI	CYCGRG	1 cut(s)	607
BsiSI	CCGG	9 cut(s)	57, 240, 334, 340, 388, 397, 420, 577, 740
BslI	CCNNNNNNNGG	2 cut(s)	13, 33
BsmAI	GTCTC	3 cut(s)	894, 1040, 1173
BsmI	GAATGC	1 cut(s)	952
BsnI	GGCC	3 cut(s)	419, 958, 1196
BsoBI	CYCGRG	1 cut(s)	607
Bsp1286I	GDGCHC	1 cut(s)	608
Bsp143I	GATC	5 cut(s)	87, 357, 681, 840, 1008
Bsp19I	CCATGG	2 cut(s)	774, 953
Bsp68I	TCGCGA	2 cut(s)	477, 1002
BspANI	GGCC	3 cut(s)	419, 958, 1196
BspCNI	CTCAG	2 cut(s)	483, 1229
BspFNI	CGCG	3 cut(s)	132, 477, 1002
BspHI	TCATGA	1 cut(s)	1035
BspLI	GGNNCC	4 cut(s)	244, 338, 575, 719
BspMAI	CTGCAG	1 cut(s)	833
BspMI	ACCTGC	1 cut(s)	15
BspOI	GCTAGC	1 cut(s)	1178
BspPI	GGATC	1 cut(s)	835
BspQI	GCTCTTC	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	612
BsrDI	GCAATG	1 cut(s)	921
BsrFI	RCCGGY	3 cut(s)	56, 333, 396
BsrI	ACTGG	1 cut(s)	922
BssAI	RCCGGY	3 cut(s)	56, 333, 396
BssECI	CCNNGG	2 cut(s)	774, 953
BssMI	GATC	5 cut(s)	87, 357, 681, 840, 1008
BssNI	GRCGYC	1 cut(s)	615
BssT1I	CCWWGG	2 cut(s)	774, 953
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	2 cut(s)	440, 1022
Bst6I	CTCTTC	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	615
BstAPI	GCANNNNNTGC	1 cut(s)	1171
BstBAI	YACGTR	1 cut(s)	409
BstDEI	CTNAG	4 cut(s)	270, 491, 762, 1216
BstDSI	CCRYGG	2 cut(s)	774, 953
BstENI	CCTNNNNNAGG	1 cut(s)	11
BstF5I	GGATG	6 cut(s)	233, 248, 382, 748, 811, 981
BstFNI	CGCG	3 cut(s)	132, 477, 1002
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	4 cut(s)	132, 156, 596, 800
BstKTI	GATC	5 cut(s)	90, 360, 684, 843, 1011
BstMAI	GTCTC	3 cut(s)	894, 1040, 1173
BstMBI	GATC	5 cut(s)	87, 357, 681, 840, 1008
BstMCI	CGRYCG	2 cut(s)	397, 1197
BstMWI	GCNNNNNNNGC	9 cut(s)	23, 118, 127, 397, 496, 612, 736, 1101, 1171
BstNI	CCWGG	1 cut(s)	722
BstSCI	CCNGG	4 cut(s)	386, 419, 576, 720
BstSFI	CTRYAG	1 cut(s)	829
BstUI	CGCG	3 cut(s)	132, 477, 1002
BstV1I	GCAGC	6 cut(s)	239, 250, 364, 714, 875, 898
BstV2I	GAAGAC	4 cut(s)	57, 539, 588, 653
BstX2I	RGATCY	3 cut(s)	681, 840, 1008
BstXI	CCANNNNNNTGG	1 cut(s)	1024
BstYI	RGATCY	3 cut(s)	681, 840, 1008
BstZI	CGGCCG	1 cut(s)	1194
BsuRI	GGCC	3 cut(s)	419, 958, 1196
BtgI	CCRYGG	2 cut(s)	774, 953
BtsCI	GGATG	6 cut(s)	233, 248, 382, 748, 811, 981
BtsI	GCAGTG	1 cut(s)	800
BtsIMutI	CAGTG	3 cut(s)	445, 800, 1027
BtuMI	TCGCGA	2 cut(s)	477, 1002
BveI	ACCTGC	1 cut(s)	15
CaiI	CAGNNNCTG	2 cut(s)	727, 1171
CciI	TCATGA	1 cut(s)	1035
CciNI	GCGGCCGC	1 cut(s)	1194
CfoI	GCGC	4 cut(s)	132, 156, 596, 800
Cfr10I	RCCGGY	3 cut(s)	56, 333, 396
Cfr13I	GGNCC	3 cut(s)	4, 574, 919
CseI	GACGC	3 cut(s)	255, 604, 1110
Csp6I	GTAC	2 cut(s)	406, 925
CspCI	CAANNNNNGTGG	2 cut(s)	1110, 1145
CviAII	CATG	6 cut(s)	445, 775, 892, 954, 1036, 1114
CviQI	GTAC	2 cut(s)	406, 925
DdeI	CTNAG	4 cut(s)	270, 491, 762, 1216
DpnI	GATC	5 cut(s)	89, 359, 683, 842, 1010
DpnII	GATC	5 cut(s)	87, 357, 681, 840, 1008
DriI	GACNNNNNGTC	1 cut(s)	1165
EaeI	YGGCCR	2 cut(s)	956, 1194
EagI	CGGCCG	1 cut(s)	1194
Eam1104I	CTCTTC	1 cut(s)	199
Eam1105I	GACNNNNNGTC	1 cut(s)	1165
EarI	CTCTTC	1 cut(s)	199
EciI	GGCGGA	4 cut(s)	166, 187, 211, 320
EclXI	CGGCCG	1 cut(s)	1194
Eco130I	CCWWGG	2 cut(s)	774, 953
Eco47I	GGWCC	3 cut(s)	4, 574, 919
Eco52I	CGGCCG	1 cut(s)	1194
Eco57I	CTGAAG	2 cut(s)	32, 434
Eco88I	CYCGRG	1 cut(s)	607
EcoNI	CCTNNNNNAGG	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	720
EcoT14I	CCWWGG	2 cut(s)	774, 953
ErhI	CCWWGG	2 cut(s)	774, 953
FaeI	CATG	6 cut(s)	448, 778, 895, 957, 1039, 1117
FalI	AAGNNNNNCTT	4 cut(s)	56, 88, 178, 210
FatI	CATG	6 cut(s)	444, 774, 891, 953, 1035, 1113
FauI	CCCGC	1 cut(s)	563
FblI	GTMKAC	1 cut(s)	435
FokI	GGATG	6 cut(s)	220, 235, 389, 755, 798, 968
FspAI	RTGCGCAY	1 cut(s)	799
FspBI	CTAG	2 cut(s)	908, 1175
FspI	TGCGCA	1 cut(s)	799
GlaI	GCGC	4 cut(s)	131, 155, 595, 799
GsaI	CCCAGC	2 cut(s)	154, 1112
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	3 cut(s)	419, 958, 1196
HapII	CCGG	9 cut(s)	57, 240, 334, 340, 388, 397, 420, 577, 740
HgaI	GACGC	3 cut(s)	255, 604, 1110
HhaI	GCGC	4 cut(s)	132, 156, 596, 800
Hin1I	GRCGYC	1 cut(s)	615
Hin1II	CATG	6 cut(s)	448, 778, 895, 957, 1039, 1117
Hin6I	GCGC	4 cut(s)	130, 154, 594, 798
HinP1I	GCGC	4 cut(s)	130, 154, 594, 798
HincII	GTYRAC	2 cut(s)	279, 436
HindII	GTYRAC	2 cut(s)	279, 436
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	1 cut(s)	69
HpaI	GTTAAC	1 cut(s)	279
HpaII	CCGG	9 cut(s)	57, 240, 334, 340, 388, 397, 420, 577, 740
Hpy166II	GTNNAC	2 cut(s)	279, 436
Hpy188I	TCNGA	5 cut(s)	85, 315, 1056, 1183, 1219
Hpy188III	TCNNGA	9 cut(s)	106, 116, 476, 697, 848, 943, 1001, 1036, 1075
Hpy8I	GTNNAC	2 cut(s)	279, 436
Hpy99I	CGWCG	2 cut(s)	620, 1104
HpyAV	CCTTC	7 cut(s)	7, 320, 409, 482, 854, 1099, 1128
HpyCH4III	ACNGT	2 cut(s)	440, 1022
HpyCH4IV	ACGT	2 cut(s)	408, 991
HpyCH4V	TGCA	8 cut(s)	485, 811, 831, 891, 914, 950, 1066, 1165
HpyF10VI	GCNNNNNNNGC	9 cut(s)	23, 118, 127, 397, 496, 612, 736, 1101, 1171
HpyF3I	CTNAG	4 cut(s)	270, 491, 762, 1216
HpySE526I	ACGT	2 cut(s)	408, 991
Hsp92I	GRCGYC	1 cut(s)	615
Hsp92II	CATG	6 cut(s)	448, 778, 895, 957, 1039, 1117
HspAI	GCGC	4 cut(s)	130, 154, 594, 798
KroI	GCCGGC	1 cut(s)	333
KroNI	GCCGGC	1 cut(s)	335
KspAI	GTTAAC	1 cut(s)	279
Kzo9I	GATC	5 cut(s)	87, 357, 681, 840, 1008
LguI	GCTCTTC	1 cut(s)	199
LmnI	GCTCC	5 cut(s)	118, 342, 661, 724, 1249
Lsp1109I	GCAGC	6 cut(s)	239, 250, 364, 714, 875, 898
LweI	GCATC	7 cut(s)	373, 610, 726, 733, 820, 990, 1187
MaeI	CTAG	2 cut(s)	908, 1175
MaeII	ACGT	2 cut(s)	408, 991
MaeIII	GTNAC	2 cut(s)	440, 967
MalI	GATC	5 cut(s)	89, 359, 683, 842, 1010
MbiI	CCGCTC	1 cut(s)	612
MboI	GATC	5 cut(s)	87, 357, 681, 840, 1008
MfeI	CAATTG	1 cut(s)	960
MflI	RGATCY	3 cut(s)	681, 840, 1008
MhlI	GDGCHC	1 cut(s)	608
MlsI	TGGCCA	1 cut(s)	958
MluCI	AATT	4 cut(s)	134, 217, 652, 960
MluNI	TGGCCA	1 cut(s)	958
MmeI	TCCRAC	2 cut(s)	195, 279
Mox20I	TGGCCA	1 cut(s)	958
MroNI	GCCGGC	1 cut(s)	333
MroXI	GAANNNNTTC	2 cut(s)	467, 1227
MscI	TGGCCA	1 cut(s)	958
MseI	TTAA	1 cut(s)	278
Msp20I	TGGCCA	1 cut(s)	958
MspA1I	CMGCKG	2 cut(s)	263, 1203
MspI	CCGG	9 cut(s)	57, 240, 334, 340, 388, 397, 420, 577, 740
MspR9I	CCNGG	4 cut(s)	388, 421, 578, 722
MunI	CAATTG	1 cut(s)	960
Mva1269I	GAATGC	1 cut(s)	952
MvaI	CCWGG	1 cut(s)	722
MvnI	CGCG	3 cut(s)	132, 477, 1002
MwoI	GCNNNNNNNGC	9 cut(s)	23, 118, 127, 397, 496, 612, 736, 1101, 1171
NaeI	GCCGGC	1 cut(s)	335
NciI	CCSGG	3 cut(s)	388, 421, 578
NcoI	CCATGG	2 cut(s)	774, 953
NdeII	GATC	5 cut(s)	87, 357, 681, 840, 1008
NgoMIV	GCCGGC	1 cut(s)	333
NheI	GCTAGC	1 cut(s)	1174
NlaIII	CATG	6 cut(s)	448, 778, 895, 957, 1039, 1117
NlaIV	GGNNCC	4 cut(s)	244, 338, 575, 719
NmuCI	GTSAC	2 cut(s)	440, 967
NotI	GCGGCCGC	1 cut(s)	1194
NruI	TCGCGA	2 cut(s)	477, 1002
NsbI	TGCGCA	1 cut(s)	799
PaeR7I	CTCGAG	1 cut(s)	607
PagI	TCATGA	1 cut(s)	1035
PciSI	GCTCTTC	1 cut(s)	199
PctI	GAATGC	1 cut(s)	952
PdiI	GCCGGC	1 cut(s)	335
PdmI	GAANNNNTTC	2 cut(s)	467, 1227
PfeI	GAWTC	1 cut(s)	69
PfoI	TCCNGGA	1 cut(s)	576
Ppu21I	YACGTR	1 cut(s)	409
Psp1406I	AACGTT	1 cut(s)	991
Psp6I	CCWGG	1 cut(s)	720
PspFI	CCCAGC	2 cut(s)	150, 1108
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	4 cut(s)	244, 338, 575, 719
PspPI	GGNCC	3 cut(s)	4, 574, 919
PspXI	VCTCGAGB	1 cut(s)	607
PstI	CTGCAG	1 cut(s)	833
PstNI	CAGNNNCTG	2 cut(s)	727, 1171
PsuI	RGATCY	3 cut(s)	681, 840, 1008
RruI	TCGCGA	2 cut(s)	477, 1002
RsaI	GTAC	2 cut(s)	407, 926
RsaNI	GTAC	2 cut(s)	406, 925
SalI	GTCGAC	1 cut(s)	434
SapI	GCTCTTC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	278
Sau3AI	GATC	5 cut(s)	87, 357, 681, 840, 1008
Sau96I	GGNCC	3 cut(s)	4, 574, 919
ScrFI	CCNGG	4 cut(s)	388, 421, 578, 722
SduI	GDGCHC	1 cut(s)	608
SfaNI	GCATC	7 cut(s)	373, 610, 726, 733, 820, 990, 1187
SfcI	CTRYAG	1 cut(s)	829
Sfr274I	CTCGAG	1 cut(s)	607
SgrAI	CRCCGGYG	1 cut(s)	56
SinI	GGWCC	3 cut(s)	4, 574, 919
SlaI	CTCGAG	1 cut(s)	607
SmlI	CTYRAG	3 cut(s)	347, 401, 607
SmoI	CTYRAG	3 cut(s)	347, 401, 607
Sse9I	AATT	4 cut(s)	134, 217, 652, 960
SspMI	CTAG	2 cut(s)	908, 1175
StyD4I	CCNGG	4 cut(s)	386, 419, 576, 720
StyI	CCWWGG	2 cut(s)	774, 953
TaaI	ACNGT	2 cut(s)	440, 1022
TaiI	ACGT	2 cut(s)	411, 994
TaqI	TCGA	9 cut(s)	45, 90, 297, 393, 429, 435, 608, 618, 657
TasI	AATT	4 cut(s)	134, 217, 652, 960
TatI	WGTACW	1 cut(s)	924
TfiI	GAWTC	1 cut(s)	69
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	3 cut(s)	445, 800, 1027
TseFI	GTSAC	2 cut(s)	440, 967
TseI	GCWGC	6 cut(s)	227, 263, 352, 727, 888, 911
Tsp45I	GTSAC	2 cut(s)	440, 967
TspDTI	ATGAA	6 cut(s)	320, 659, 687, 726, 908, 1052
TspGWI	ACGGA	2 cut(s)	464, 551
TspRI	CASTG	3 cut(s)	445, 800, 1027
VpaK11BI	GGWCC	3 cut(s)	4, 574, 919
XagI	CCTNNNNNAGG	1 cut(s)	11
XapI	RAATTY	1 cut(s)	652
XhoI	CTCGAG	1 cut(s)	607
XmiI	GTMKAC	1 cut(s)	435
XmnI	GAANNNNTTC	2 cut(s)	467, 1227
XspI	CTAG	2 cut(s)	908, 1175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.