Rw6G028320

Pre-mRNA-splicing factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
52287457 .. 52289241
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G028320.1

Sequence Viewer

Length: 1257 bp
ATGGAGGATCTGAAGAAAGAGATAGAGGCCAAGCGGCAGAGGCTGGCGGAGGCGGCGACCGGCAGCGGCAGCAAGCGATATTTCAATCGCGCCGAGATGGAAAAGAAGCAAATCCAGAAGAAGCGGGAGGAAGAGAAGCGCGAATTAGAAGCCAAAGCCAAATCCAAGCGCCAATCCGCCGCCGCCTCCTCCTCCGCCGCCGCAACCGGTGGTGATTCAACTTCCAAATCAAACCCTAACGCCGCTGCTGCCACCACCACCTCCGCCGCGCCCTCGGCTTCTAAAGCCCTAACCGACGAGCAGAAAATCGACCTGATTAATATCCCCAAGCCGGAAGTGATCCGCCGCCTCAGGATTCTGAAGCAGCCGATCACTCTCTTCGGCGAGGACGACGACGCCCGGCTCGACCGGCTGAAGCACGTGTTGAAGACCGGAATGTTCGAGGTCGACTCCGACATGACGGAGGGGCAGACCAACGATTTCCTCCGGGATATCGCCGAGCTGAGGAAGCGGCAGAAGTCGGGGATTGTGAGCGACCGGAAGAGGAAGAACTCCGAGGTCGTGGACGGCGTGGTGGAGGACGGCGAGGGTGGGGTGAGGGAAGATGAGCTTGACGGCGACGGCGGGTCGAGCGGAGCTGATGTGGATAGGGACTTGAAGCTAATGAAGGCGAATTTCGATGAGTTGTGCGATGAAGATAAGATTTTGGTGTTCTTCAAGAGGCTGCTGAGTGAATGGAAACAGGAGCTGGGTCAGATGACGGCGGCTGACCGGCGAGCTGGGAAGAAAATTGCGACGTTGAATCAATGTGCTCGCTACTTGCATCCCTTGTTCAAGTTTTGCAGGAAGAAGGTTCTTCCAGATGATATTCGCCGAGCATTGATGGTGGTGGTTGATTGCTGCATGAAGCGAGACTACCTAGCTGCAATGGACCAATACATTAAGATGGCTATTGGGAATGCACCATGGCCAATTGGTGTCACTATGGTTGGTATCCACGAACGTTCAGCTCGCGAGAAGATCTACACCAACAGTGTGGCTCATATTATGAATGATGAGACAACTCGAAAATACTTGCAGTCTGTGAAAAGATTGATGACATTTTGTCAGCGACGCTACCCAACTATGCCATCAAAAGCTGTTGAGTTCAACAGCTTGGCTAATGGTAGTGACTTGCAGTCTCTGCTACAAATGGAGACTGACTCTGGCAGTAGTCAAGTCTTTGAGGAAAGGCTTCGGTTAATGCCTGCGCCTTAG

Protein Analysis

418

Amino Acids

47.0

Weight (kDa)

8.98

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP4 PF08799 113 - 139 1e-11 pre-mRNA processing factor 4 (PRP4) like
Prp18 PF02840 237 - 375 3.6e-57 Prp18 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03140
fragaria_vesca FvH4_2g23380
malus_domestica MD03G1263300.v1.1 MD11G1284100.v1.1
prunus_persica Prupe.8G239700_v2.0.a1
pyrus_communis pycom03g21080
rosa_chinensis RchiOBHm_Chr6g0290841
rosa_laevigata RLG00000012169
rosa_multiflora Rmu_sc0009276.1_g000007
rosa_roxburghii Rroxscaffold_7G00176700
rosa_rugosa Rorug06G0215100
rosa_samantha Rh6AG325700 Rh6BG333400 Rh6CG339100 Rh6DG326400
rosa_wichuraiana Rw6G028320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 633
AccI GTMKAC 1 cut(s) 447
AccII CGCG 4 cut(s) 90, 141, 269, 1014
AclI AACGTT 1 cut(s) 1003
AclWI GGATC 2 cut(s) 15, 334
AcoI YGGCCR 1 cut(s) 968
AcsI RAATTY 1 cut(s) 673
AcuI CTGAAG 3 cut(s) 32, 380, 434
AcvI CACGTG 1 cut(s) 421
AcyI GRCGYC 1 cut(s) 396
AfiI CCNNNNNNNGG 2 cut(s) 331, 504
AflIII ACRYGT 1 cut(s) 420
AgeI ACCGGT 1 cut(s) 206
AgsI TTSAA 8 cut(s) 85, 219, 427, 658, 718, 802, 835, 1150
AhdI GACNNNNNGTC 3 cut(s) 625, 1104, 1177
Alw21I GWGCWC 1 cut(s) 814
Alw26I GTCTC 4 cut(s) 906, 1052, 1185, 1190
AlwI GGATC 2 cut(s) 15, 334
AlwNI CAGNNNCTG 3 cut(s) 43, 748, 1183
AoxI GGCC 2 cut(s) 27, 968
ApeKI GCWGC 8 cut(s) 63, 69, 245, 248, 364, 724, 900, 923
ApoI RAATTY 1 cut(s) 673
AseI ATTAAT 1 cut(s) 318
AsiGI ACCGGT 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 1233
AspLEI GCGC 5 cut(s) 92, 141, 171, 271, 1252
AspS9I GGNCC 1 cut(s) 931
AsuC2I CCSGG 2 cut(s) 400, 488
AsuHPI GGTGA 2 cut(s) 224, 607
AvaII GGWCC 1 cut(s) 931
AxyI CCTNAGG 1 cut(s) 350
BalI TGGCCA 1 cut(s) 970
BarI GAAGNNNNNNTAC 2 cut(s) 899, 931
BbrPI CACGTG 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 814
BbvCI CCTCAGC 1 cut(s) 503
BbvI GCAGC 8 cut(s) 75, 81, 232, 235, 376, 711, 887, 910
BccI CCATC 4 cut(s) 91, 877, 940, 1138
BceAI ACGGC 5 cut(s) 583, 598, 631, 637, 777
BciVI GTATCC 1 cut(s) 1004
BcnI CCSGG 2 cut(s) 400, 488
BcoDI GTCTC 4 cut(s) 906, 1052, 1185, 1190
BfaI CTAG 1 cut(s) 920
BfoI RGCGCY 1 cut(s) 172
BfuI GTATCC 1 cut(s) 1004
BglII AGATCT 1 cut(s) 1020
Bme1390I CCNGG 2 cut(s) 400, 488
Bme18I GGWCC 1 cut(s) 931
BmeRI GACNNNNNGTC 3 cut(s) 625, 1104, 1177
BmgT120I GGNCC 1 cut(s) 931
BmrFI CCNGG 2 cut(s) 400, 488
BmsI GCATC 1 cut(s) 832
BpiI GAAGAC 1 cut(s) 434
BplI GAGNNNNNCTC 4 cut(s) 434, 466, 1187, 1219
Bpu10I CCTNAGC 1 cut(s) 503
BpuMI CCSGG 2 cut(s) 400, 488
BsaAI YACGTR 1 cut(s) 421
BsaBI GATNNNNATC 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 396
BsaJI CCNNGG 3 cut(s) 273, 555, 965
BsaWI WCCGGW 3 cut(s) 206, 431, 537
BsaXI ACNNNNNCTCC 2 cut(s) 627, 657
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 504
Bse118I RCCGGY 4 cut(s) 59, 206, 408, 771
Bse21I CCTNAGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 933
Bse8I GATNNNNATC 1 cut(s) 320
BseDI CCNNGG 3 cut(s) 273, 555, 965
BseGI GGATG 1 cut(s) 823
BseJI GATNNNNATC 1 cut(s) 320
BseLI CCNNNNNNNGG 2 cut(s) 331, 504
BseMI GCAATG 1 cut(s) 933
BseMII CTCAG 3 cut(s) 364, 494, 719
BseRI GAGGAG 2 cut(s) 178, 181
BseXI GCAGC 8 cut(s) 75, 81, 232, 235, 376, 711, 887, 910
BseYI CCCAGC 2 cut(s) 748, 779
Bsh1236I CGCG 4 cut(s) 90, 141, 269, 1014
Bsh1285I CGRYCG 3 cut(s) 60, 409, 538
BshFI GGCC 2 cut(s) 29, 970
BshTI ACCGGT 1 cut(s) 206
BsiEI CGRYCG 3 cut(s) 60, 409, 538
BsiHKAI GWGCWC 1 cut(s) 814
BsiSI CCGG 9 cut(s) 60, 207, 332, 400, 409, 432, 487, 538, 772
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 2 cut(s) 331, 504
BsmAI GTCTC 4 cut(s) 906, 1052, 1185, 1190
BsmFI GGGAC 1 cut(s) 665
BsmI GAATGC 1 cut(s) 964
BsnI GGCC 2 cut(s) 29, 970
Bsp1286I GDGCHC 1 cut(s) 814
Bsp143I GATC 4 cut(s) 7, 339, 369, 1020
Bsp19I CCATGG 1 cut(s) 965
Bsp68I TCGCGA 1 cut(s) 1014
BspANI GGCC 2 cut(s) 29, 970
BspCNI CTCAG 3 cut(s) 363, 495, 720
BspFNI CGCG 4 cut(s) 90, 141, 269, 1014
BspPI GGATC 2 cut(s) 15, 334
BsrBI CCGCTC 1 cut(s) 633
BsrDI GCAATG 1 cut(s) 933
BsrFI RCCGGY 4 cut(s) 59, 206, 408, 771
BssAI RCCGGY 4 cut(s) 59, 206, 408, 771
BssECI CCNNGG 3 cut(s) 273, 555, 965
BssMI GATC 4 cut(s) 7, 339, 369, 1020
BssNI GRCGYC 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 965
Bst4CI ACNGT 1 cut(s) 1034
Bst6I CTCTTC 3 cut(s) 126, 383, 536
BstACI GRCGYC 1 cut(s) 396
BstAPI GCANNNNNTGC 1 cut(s) 1183
BstBAI YACGTR 1 cut(s) 421
BstC8I GCNNGC 6 cut(s) 45, 74, 777, 814, 1012, 1248
BstDEI CTNAG 4 cut(s) 350, 503, 728, 1254
BstDSI CCRYGG 1 cut(s) 965
BstF5I GGATG 1 cut(s) 823
BstFNI CGCG 4 cut(s) 90, 141, 269, 1014
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 5 cut(s) 92, 141, 171, 271, 1252
BstKTI GATC 4 cut(s) 10, 342, 372, 1023
BstMAI GTCTC 4 cut(s) 906, 1052, 1185, 1190
BstMBI GATC 4 cut(s) 7, 339, 369, 1020
BstMCI CGRYCG 3 cut(s) 60, 409, 538
BstSCI CCNGG 2 cut(s) 398, 486
BstUI CGCG 4 cut(s) 90, 141, 269, 1014
BstV1I GCAGC 8 cut(s) 75, 81, 232, 235, 376, 711, 887, 910
BstV2I GAAGAC 1 cut(s) 434
BstX2I RGATCY 2 cut(s) 7, 1020
BstXI CCANNNNNNTGG 1 cut(s) 1036
BstYI RGATCY 2 cut(s) 7, 1020
Bsu36I CCTNAGG 1 cut(s) 350
BsuI GTATCC 1 cut(s) 1004
BsuRI GGCC 2 cut(s) 29, 970
BtgI CCRYGG 1 cut(s) 965
BtgZI GCGATG 1 cut(s) 705
BtsCI GGATG 1 cut(s) 823
BtsIMutI CAGTG 1 cut(s) 1039
BtuMI TCGCGA 1 cut(s) 1014
Cac8I GCNNGC 6 cut(s) 45, 74, 777, 814, 1012, 1248
CaiI CAGNNNCTG 3 cut(s) 43, 748, 1183
CfoI GCGC 5 cut(s) 92, 141, 171, 271, 1252
Cfr10I RCCGGY 4 cut(s) 59, 206, 408, 771
Cfr13I GGNCC 1 cut(s) 931
CseI GACGC 2 cut(s) 404, 1122
CspAI ACCGGT 1 cut(s) 206
CviAII CATG 3 cut(s) 457, 904, 966
DdeI CTNAG 4 cut(s) 350, 503, 728, 1254
DpnI GATC 4 cut(s) 9, 341, 371, 1022
DpnII GATC 4 cut(s) 7, 339, 369, 1020
DriI GACNNNNNGTC 3 cut(s) 625, 1104, 1177
EaeI YGGCCR 1 cut(s) 968
Eam1104I CTCTTC 3 cut(s) 126, 383, 536
Eam1105I GACNNNNNGTC 3 cut(s) 625, 1104, 1177
EarI CTCTTC 3 cut(s) 126, 383, 536
EciI GGCGGA 5 cut(s) 62, 166, 184, 253, 332
Eco130I CCWWGG 1 cut(s) 965
Eco32I GATATC 1 cut(s) 493
Eco47I GGWCC 1 cut(s) 931
Eco57I CTGAAG 3 cut(s) 32, 380, 434
Eco72I CACGTG 1 cut(s) 421
Eco81I CCTNAGG 1 cut(s) 350
EcoRV GATATC 1 cut(s) 493
EcoT14I CCWWGG 1 cut(s) 965
ErhI CCWWGG 1 cut(s) 965
FaeI CATG 3 cut(s) 460, 907, 969
FaiI YATR 7 cut(s) 458, 905, 967, 986, 1044, 1049, 1127
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FaqI GGGAC 1 cut(s) 665
FatI CATG 3 cut(s) 456, 903, 965
FauI CCCGC 2 cut(s) 117, 617
FblI GTMKAC 1 cut(s) 447
FokI GGATG 1 cut(s) 810
FspBI CTAG 1 cut(s) 920
GlaI GCGC 5 cut(s) 91, 140, 170, 270, 1251
GsaI CCCAGC 2 cut(s) 752, 783
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 2 cut(s) 29, 970
HapII CCGG 9 cut(s) 60, 207, 332, 400, 409, 432, 487, 538, 772
HgaI GACGC 2 cut(s) 404, 1122
HhaI GCGC 5 cut(s) 92, 141, 171, 271, 1252
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 3 cut(s) 460, 907, 969
Hin6I GCGC 5 cut(s) 90, 139, 169, 269, 1250
HinP1I GCGC 5 cut(s) 90, 139, 169, 269, 1250
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HinfI GANTC 5 cut(s) 215, 355, 449, 802, 1202
HpaII CCGG 9 cut(s) 60, 207, 332, 400, 409, 432, 487, 538, 772
HphI GGTGA 2 cut(s) 224, 607
Hpy166II GTNNAC 2 cut(s) 448, 565
Hpy188I TCNGA 5 cut(s) 12, 360, 454, 556, 756
Hpy188III TCNNGA 5 cut(s) 115, 352, 718, 860, 1013
Hpy8I GTNNAC 2 cut(s) 448, 565
Hpy99I CGWCG 6 cut(s) 299, 395, 398, 623, 799, 1116
HpyAV CCTTC 2 cut(s) 661, 844
HpyCH4III ACNGT 1 cut(s) 1034
HpyCH4IV ACGT 3 cut(s) 420, 797, 1003
HpyCH4V TGCA 7 cut(s) 823, 843, 903, 926, 962, 1078, 1177
HpyF3I CTNAG 4 cut(s) 350, 503, 728, 1254
HpySE526I ACGT 3 cut(s) 420, 797, 1003
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 3 cut(s) 460, 907, 969
HspAI GCGC 5 cut(s) 90, 139, 169, 269, 1250
Kzo9I GATC 4 cut(s) 7, 339, 369, 1020
LmnI GCTCC 2 cut(s) 635, 745
Lsp1109I GCAGC 8 cut(s) 75, 81, 232, 235, 376, 711, 887, 910
LweI GCATC 1 cut(s) 832
MaeI CTAG 1 cut(s) 920
MaeII ACGT 3 cut(s) 420, 797, 1003
MaeIII GTNAC 2 cut(s) 979, 1169
MalI GATC 4 cut(s) 9, 341, 371, 1022
MbiI CCGCTC 1 cut(s) 633
MboI GATC 4 cut(s) 7, 339, 369, 1020
MfeI CAATTG 1 cut(s) 972
MflI RGATCY 2 cut(s) 7, 1020
MhlI GDGCHC 1 cut(s) 814
MlsI TGGCCA 1 cut(s) 970
MluCI AATT 4 cut(s) 143, 673, 789, 972
MluNI TGGCCA 1 cut(s) 970
MlyI GAGTC 2 cut(s) 443, 1196
MmeI TCCRAC 1 cut(s) 477
Mox20I TGGCCA 1 cut(s) 970
MroXI GAANNNNTTC 1 cut(s) 1233
MscI TGGCCA 1 cut(s) 970
MseI TTAA 3 cut(s) 318, 942, 1241
MslI CAYNNNNRTG 1 cut(s) 944
Msp20I TGGCCA 1 cut(s) 970
MspA1I CMGCKG 2 cut(s) 66, 245
MspI CCGG 9 cut(s) 60, 207, 332, 400, 409, 432, 487, 538, 772
MspR9I CCNGG 2 cut(s) 400, 488
MunI CAATTG 1 cut(s) 972
Mva1269I GAATGC 1 cut(s) 964
MvnI CGCG 4 cut(s) 90, 141, 269, 1014
NciI CCSGG 2 cut(s) 400, 488
NcoI CCATGG 1 cut(s) 965
NdeII GATC 4 cut(s) 7, 339, 369, 1020
NlaIII CATG 3 cut(s) 460, 907, 969
NmeAIII GCCGAG 4 cut(s) 118, 254, 523, 899
NmuCI GTSAC 2 cut(s) 979, 1169
NruI TCGCGA 1 cut(s) 1014
PcsI WCGNNNNNNNCGW 3 cut(s) 387, 402, 567
PctI GAATGC 1 cut(s) 964
PdmI GAANNNNTTC 1 cut(s) 1233
PfeI GAWTC 3 cut(s) 215, 355, 802
PfoI TCCNGGA 1 cut(s) 486
PinAI ACCGGT 1 cut(s) 206
PleI GAGTC 2 cut(s) 443, 1196
PmaCI CACGTG 1 cut(s) 421
PmlI CACGTG 1 cut(s) 421
PpsI GAGTC 2 cut(s) 443, 1196
Ppu21I YACGTR 1 cut(s) 421
PshBI ATTAAT 1 cut(s) 318
Psp1406I AACGTT 1 cut(s) 1003
PspCI CACGTG 1 cut(s) 421
PspFI CCCAGC 2 cut(s) 748, 779
PspPI GGNCC 1 cut(s) 931
PstNI CAGNNNCTG 3 cut(s) 43, 748, 1183
PsuI RGATCY 2 cut(s) 7, 1020
RruI TCGCGA 1 cut(s) 1014
RseI CAYNNNNRTG 1 cut(s) 944
SalI GTCGAC 1 cut(s) 446
SaqAI TTAA 3 cut(s) 318, 942, 1241
Sau3AI GATC 4 cut(s) 7, 339, 369, 1020
Sau96I GGNCC 1 cut(s) 931
SchI GAGTC 2 cut(s) 443, 1196
ScrFI CCNGG 2 cut(s) 400, 488
SduI GDGCHC 1 cut(s) 814
SfaNI GCATC 1 cut(s) 832
SinI GGWCC 1 cut(s) 931
SmiMI CAYNNNNRTG 1 cut(s) 944
Sse9I AATT 4 cut(s) 143, 673, 789, 972
SspMI CTAG 1 cut(s) 920
StyD4I CCNGG 2 cut(s) 398, 486
StyI CCWWGG 1 cut(s) 965
TaaI ACNGT 1 cut(s) 1034
TaiI ACGT 3 cut(s) 423, 800, 1006
TaqI TCGA 7 cut(s) 309, 405, 441, 447, 629, 678, 1066
TasI AATT 4 cut(s) 143, 673, 789, 972
TfiI GAWTC 3 cut(s) 215, 355, 802
Tru1I TTAA 3 cut(s) 318, 942, 1241
Tru9I TTAA 3 cut(s) 318, 942, 1241
TscAI CASTG 1 cut(s) 1039
TseFI GTSAC 2 cut(s) 979, 1169
TseI GCWGC 8 cut(s) 63, 69, 245, 248, 364, 724, 900, 923
Tsp45I GTSAC 2 cut(s) 979, 1169
TspDTI ATGAA 4 cut(s) 680, 708, 920, 1064
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 1 cut(s) 1039
VpaK11BI GGWCC 1 cut(s) 931
VspI ATTAAT 1 cut(s) 318
XapI RAATTY 1 cut(s) 673
XmiI GTMKAC 1 cut(s) 447
XmnI GAANNNNTTC 1 cut(s) 1233
XspI CTAG 1 cut(s) 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.