RLG00000012169

Pre-mRNA-splicing factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
15951315 .. 15953089
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012169

Sequence Viewer

Length: 1257 bp
ATGGAGGATCTGAAGAAAGAGATACAGGCCAAGCGGCAGAGGCTGGCGGAGGCGGCGACCGGCACCGGCAGCAAGCGATATTTCAATCGCGCCGAGATGGAAAAGAAGCAAATCCAGAAGAAGCGGGAGGAAGAGAAGCGAGAATTAGAAGCCAAAGCCAAATCCAAGCGCCAATCCGCCGCCGCCTCCTCCTCCGCCGCCGCAACCGGTGGTGATTCAACTTCCAAATCAAACCCTAACGCCGCCGCTACCACCACCACGTCCGCCGCTCCCTCGGCTTCTAAAGCCCTAACCGACGAGCAGAAAATCGACCTGATTAATATCCCTAAGCCGGAAGTGATCCGCCGCCTCAGGATTCTGAAGCAGCCGATCACTCTCTTCGGCGAGGACGACGACGCCCGGCTCGACCGGCTGAAGCACGTGTTGAAGACCGGAATGTTCGAGGTCGACTCCGACATGACGGAGGGGCAGACCAACGATTTCCTCCGGGATATCGCCGAGCTGAGGAAGCGGCAGAAGTCGGGGATTGTGAGCGACCGGAAGAGGAAGAACTCCGAGGTCGTGGACGGCGTGGTGGAGGACGGCGAGGGTGGGGTGAGGGAAGATGAGCTTGACGGCGACGGCGGGTCGAGCGGAGCTGATGTGGATAGGGACTTGAAGCTAATGAAGGCCAATTTCGATGAGTTGTGCGATGAAGATAAGATTTTGGTGTTCTTCAAGAGGCTGCTGAGTGAATGGAAACAGGAGCTGGGTCAGATGACGGCGGCTGACAGGCGAGCTGGGAAGAAAATTGCCACATTGAATCAATGTGCTCGCTACTTGCATCCCTTGTTCAAGTTTTGCAGGAAGAAGGTTCTTCCAGATGATATTCGCCGAGCATTGATGGTGGTGGTTGATTGCTGCATGAAGCGAGACTACCTAGCTGCAATGGACCAATACATTAAGATGGCTATTGGGAATGCACCATGGCCAATTGGTGTCACTATGGTTGGTATCCACGAACGTTCAGCTCGCGAGAAGATCTACACCAACAGTGTGGCTCATATTATGAATGATGAGACAACTCGAAAATACTTGCAGTCTGTGAAAAGATTGATGACCTTTTGTCAGCGACGCTACCCAACTATGCCATCAAAAGCTGTTGAGTTCAACAGCTTGGCTAATGGTAGCGACTTGCAGTCTCTGCTACAAATGGAGACTGACTCTGGCAGTAGTCAAGTCTTTGAGGAAAGGCTTCGGTTAATGCCTGCTCCTTAG

Protein Analysis

419

Amino Acids

47.04

Weight (kDa)

9.06

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP4 PF08799 113 - 139 1e-11 pre-mRNA processing factor 4 (PRP4) like
Prp18 PF02840 237 - 375 3.6e-57 Prp18 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03140
fragaria_vesca FvH4_2g23380
malus_domestica MD03G1263300.v1.1 MD11G1284100.v1.1
prunus_persica Prupe.8G239700_v2.0.a1
pyrus_communis pycom03g21080
rosa_chinensis RchiOBHm_Chr6g0290841
rosa_laevigata RLG00000012169
rosa_multiflora Rmu_sc0009276.1_g000007
rosa_roxburghii Rroxscaffold_7G00176700
rosa_rugosa Rorug06G0215100
rosa_samantha Rh6AG325700 Rh6BG333400 Rh6CG339100 Rh6DG326400
rosa_wichuraiana Rw6G028320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 62
AccBSI CCGCTC 2 cut(s) 269, 633
AccI GTMKAC 1 cut(s) 447
AccII CGCG 2 cut(s) 90, 1014
AclI AACGTT 1 cut(s) 1003
AclWI GGATC 2 cut(s) 15, 334
AcoI YGGCCR 1 cut(s) 968
AcuI CTGAAG 3 cut(s) 32, 380, 434
AcvI CACGTG 1 cut(s) 421
AcyI GRCGYC 1 cut(s) 396
AfiI CCNNNNNNNGG 2 cut(s) 331, 504
AflIII ACRYGT 1 cut(s) 420
AgeI ACCGGT 1 cut(s) 206
AgsI TTSAA 8 cut(s) 85, 219, 427, 658, 718, 802, 835, 1150
AhdI GACNNNNNGTC 3 cut(s) 625, 1104, 1177
AjiI CACGTC 1 cut(s) 261
Alw21I GWGCWC 1 cut(s) 814
Alw26I GTCTC 4 cut(s) 906, 1052, 1185, 1190
AlwI GGATC 2 cut(s) 15, 334
AlwNI CAGNNNCTG 3 cut(s) 43, 748, 1183
AoxI GGCC 3 cut(s) 27, 669, 968
ApeKI GCWGC 5 cut(s) 69, 364, 724, 900, 923
AseI ATTAAT 1 cut(s) 318
AsiGI ACCGGT 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 1233
AspLEI GCGC 2 cut(s) 92, 171
AspS9I GGNCC 1 cut(s) 931
AsuC2I CCSGG 2 cut(s) 400, 488
AsuHPI GGTGA 2 cut(s) 224, 607
AvaII GGWCC 1 cut(s) 931
AxyI CCTNAGG 1 cut(s) 350
BalI TGGCCA 1 cut(s) 970
BanI GGYRCC 1 cut(s) 62
BarI GAAGNNNNNNTAC 2 cut(s) 899, 931
BbrPI CACGTG 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 814
BbvCI CCTCAGC 1 cut(s) 503
BbvI GCAGC 5 cut(s) 81, 376, 711, 887, 910
BccI CCATC 4 cut(s) 91, 877, 940, 1138
BceAI ACGGC 5 cut(s) 583, 598, 631, 637, 777
BciVI GTATCC 1 cut(s) 1004
BcnI CCSGG 2 cut(s) 400, 488
BcoDI GTCTC 4 cut(s) 906, 1052, 1185, 1190
BfaI CTAG 1 cut(s) 920
BfoI RGCGCY 1 cut(s) 172
BfuI GTATCC 1 cut(s) 1004
BglII AGATCT 1 cut(s) 1020
Bme1390I CCNGG 2 cut(s) 400, 488
Bme18I GGWCC 1 cut(s) 931
BmeRI GACNNNNNGTC 3 cut(s) 625, 1104, 1177
BmgBI CACGTC 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 931
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 2 cut(s) 400, 488
BmsI GCATC 1 cut(s) 832
BpiI GAAGAC 1 cut(s) 434
BplI GAGNNNNNCTC 4 cut(s) 434, 466, 1187, 1219
Bpu10I CCTNAGC 2 cut(s) 327, 503
BpuMI CCSGG 2 cut(s) 400, 488
BsaAI YACGTR 1 cut(s) 421
BsaBI GATNNNNATC 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 396
BsaJI CCNNGG 3 cut(s) 273, 555, 965
BsaWI WCCGGW 3 cut(s) 206, 431, 537
BsaXI ACNNNNNCTCC 2 cut(s) 627, 657
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 504
Bse118I RCCGGY 4 cut(s) 59, 65, 206, 408
Bse21I CCTNAGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 933
Bse8I GATNNNNATC 1 cut(s) 320
BseDI CCNNGG 3 cut(s) 273, 555, 965
BseGI GGATG 1 cut(s) 823
BseJI GATNNNNATC 1 cut(s) 320
BseLI CCNNNNNNNGG 2 cut(s) 331, 504
BseMI GCAATG 1 cut(s) 933
BseMII CTCAG 3 cut(s) 364, 494, 719
BseRI GAGGAG 2 cut(s) 178, 181
BseXI GCAGC 5 cut(s) 81, 376, 711, 887, 910
BseYI CCCAGC 2 cut(s) 748, 779
Bsh1236I CGCG 2 cut(s) 90, 1014
Bsh1285I CGRYCG 3 cut(s) 60, 409, 538
BshFI GGCC 3 cut(s) 29, 671, 970
BshNI GGYRCC 1 cut(s) 62
BshTI ACCGGT 1 cut(s) 206
BsiEI CGRYCG 3 cut(s) 60, 409, 538
BsiHKAI GWGCWC 1 cut(s) 814
BsiSI CCGG 9 cut(s) 60, 66, 207, 332, 400, 409, 432, 487, 538
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 2 cut(s) 331, 504
BsmAI GTCTC 4 cut(s) 906, 1052, 1185, 1190
BsmFI GGGAC 1 cut(s) 665
BsmI GAATGC 1 cut(s) 964
BsnI GGCC 3 cut(s) 29, 671, 970
Bsp1286I GDGCHC 1 cut(s) 814
Bsp143I GATC 4 cut(s) 7, 339, 369, 1020
Bsp19I CCATGG 1 cut(s) 965
Bsp68I TCGCGA 1 cut(s) 1014
BspANI GGCC 3 cut(s) 29, 671, 970
BspCNI CTCAG 3 cut(s) 363, 495, 720
BspFNI CGCG 2 cut(s) 90, 1014
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 2 cut(s) 15, 334
BspT107I GGYRCC 1 cut(s) 62
BsrBI CCGCTC 2 cut(s) 269, 633
BsrDI GCAATG 1 cut(s) 933
BsrFI RCCGGY 4 cut(s) 59, 65, 206, 408
BssAI RCCGGY 4 cut(s) 59, 65, 206, 408
BssECI CCNNGG 3 cut(s) 273, 555, 965
BssMI GATC 4 cut(s) 7, 339, 369, 1020
BssNI GRCGYC 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 965
Bst4CI ACNGT 1 cut(s) 1034
Bst6I CTCTTC 3 cut(s) 126, 383, 536
BstACI GRCGYC 1 cut(s) 396
BstAPI GCANNNNNTGC 1 cut(s) 1183
BstBAI YACGTR 1 cut(s) 421
BstC8I GCNNGC 6 cut(s) 45, 74, 777, 814, 1012, 1248
BstDEI CTNAG 5 cut(s) 327, 350, 503, 728, 1254
BstDSI CCRYGG 1 cut(s) 965
BstF5I GGATG 1 cut(s) 823
BstFNI CGCG 2 cut(s) 90, 1014
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 2 cut(s) 92, 171
BstKTI GATC 4 cut(s) 10, 342, 372, 1023
BstMAI GTCTC 4 cut(s) 906, 1052, 1185, 1190
BstMBI GATC 4 cut(s) 7, 339, 369, 1020
BstMCI CGRYCG 3 cut(s) 60, 409, 538
BstMWI GCNNNNNNNGC 9 cut(s) 40, 53, 69, 275, 284, 409, 508, 630, 1183
BstSCI CCNGG 2 cut(s) 398, 486
BstUI CGCG 2 cut(s) 90, 1014
BstV1I GCAGC 5 cut(s) 81, 376, 711, 887, 910
BstV2I GAAGAC 1 cut(s) 434
BstX2I RGATCY 2 cut(s) 7, 1020
BstXI CCANNNNNNTGG 1 cut(s) 1036
BstYI RGATCY 2 cut(s) 7, 1020
Bsu36I CCTNAGG 1 cut(s) 350
BsuI GTATCC 1 cut(s) 1004
BsuRI GGCC 3 cut(s) 29, 671, 970
BtgI CCRYGG 1 cut(s) 965
BtgZI GCGATG 1 cut(s) 705
BtrI CACGTC 1 cut(s) 261
BtsCI GGATG 1 cut(s) 823
BtsIMutI CAGTG 1 cut(s) 1039
BtuMI TCGCGA 1 cut(s) 1014
Cac8I GCNNGC 6 cut(s) 45, 74, 777, 814, 1012, 1248
CaiI CAGNNNCTG 3 cut(s) 43, 748, 1183
CfoI GCGC 2 cut(s) 92, 171
Cfr10I RCCGGY 4 cut(s) 59, 65, 206, 408
Cfr13I GGNCC 1 cut(s) 931
CseI GACGC 2 cut(s) 404, 1122
CspAI ACCGGT 1 cut(s) 206
CviAII CATG 3 cut(s) 457, 904, 966
DdeI CTNAG 5 cut(s) 327, 350, 503, 728, 1254
DpnI GATC 4 cut(s) 9, 341, 371, 1022
DpnII GATC 4 cut(s) 7, 339, 369, 1020
DriI GACNNNNNGTC 3 cut(s) 625, 1104, 1177
EaeI YGGCCR 1 cut(s) 968
Eam1104I CTCTTC 3 cut(s) 126, 383, 536
Eam1105I GACNNNNNGTC 3 cut(s) 625, 1104, 1177
EarI CTCTTC 3 cut(s) 126, 383, 536
EciI GGCGGA 5 cut(s) 62, 166, 184, 253, 332
Eco130I CCWWGG 1 cut(s) 965
Eco32I GATATC 1 cut(s) 493
Eco47I GGWCC 1 cut(s) 931
Eco57I CTGAAG 3 cut(s) 32, 380, 434
Eco72I CACGTG 1 cut(s) 421
Eco81I CCTNAGG 1 cut(s) 350
EcoRV GATATC 1 cut(s) 493
EcoT14I CCWWGG 1 cut(s) 965
ErhI CCWWGG 1 cut(s) 965
FaeI CATG 3 cut(s) 460, 907, 969
FaiI YATR 7 cut(s) 458, 905, 967, 986, 1044, 1049, 1127
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FaqI GGGAC 1 cut(s) 665
FatI CATG 3 cut(s) 456, 903, 965
FauI CCCGC 2 cut(s) 117, 617
FblI GTMKAC 1 cut(s) 447
FokI GGATG 1 cut(s) 810
FspBI CTAG 1 cut(s) 920
GlaI GCGC 2 cut(s) 91, 170
GsaI CCCAGC 2 cut(s) 752, 783
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 3 cut(s) 29, 671, 970
HapII CCGG 9 cut(s) 60, 66, 207, 332, 400, 409, 432, 487, 538
HgaI GACGC 2 cut(s) 404, 1122
HhaI GCGC 2 cut(s) 92, 171
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 3 cut(s) 460, 907, 969
Hin6I GCGC 2 cut(s) 90, 169
HinP1I GCGC 2 cut(s) 90, 169
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HinfI GANTC 5 cut(s) 215, 355, 449, 802, 1202
HpaII CCGG 9 cut(s) 60, 66, 207, 332, 400, 409, 432, 487, 538
HphI GGTGA 2 cut(s) 224, 607
Hpy166II GTNNAC 2 cut(s) 448, 565
Hpy188I TCNGA 5 cut(s) 12, 360, 454, 556, 756
Hpy188III TCNNGA 5 cut(s) 115, 352, 718, 860, 1013
Hpy8I GTNNAC 2 cut(s) 448, 565
Hpy99I CGWCG 5 cut(s) 299, 395, 398, 623, 1116
HpyAV CCTTC 2 cut(s) 661, 844
HpyCH4III ACNGT 1 cut(s) 1034
HpyCH4IV ACGT 3 cut(s) 260, 420, 1003
HpyCH4V TGCA 7 cut(s) 823, 843, 903, 926, 962, 1078, 1177
HpyF10VI GCNNNNNNNGC 9 cut(s) 40, 53, 69, 275, 284, 409, 508, 630, 1183
HpyF3I CTNAG 5 cut(s) 327, 350, 503, 728, 1254
HpySE526I ACGT 3 cut(s) 260, 420, 1003
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 3 cut(s) 460, 907, 969
HspAI GCGC 2 cut(s) 90, 169
Kzo9I GATC 4 cut(s) 7, 339, 369, 1020
LmnI GCTCC 4 cut(s) 274, 635, 745, 1255
Lsp1109I GCAGC 5 cut(s) 81, 376, 711, 887, 910
LweI GCATC 1 cut(s) 832
MaeI CTAG 1 cut(s) 920
MaeII ACGT 3 cut(s) 260, 420, 1003
MaeIII GTNAC 1 cut(s) 979
MalI GATC 4 cut(s) 9, 341, 371, 1022
MbiI CCGCTC 2 cut(s) 269, 633
MboI GATC 4 cut(s) 7, 339, 369, 1020
MfeI CAATTG 1 cut(s) 972
MflI RGATCY 2 cut(s) 7, 1020
MhlI GDGCHC 1 cut(s) 814
MlsI TGGCCA 1 cut(s) 970
MluCI AATT 4 cut(s) 143, 673, 789, 972
MluNI TGGCCA 1 cut(s) 970
MlyI GAGTC 2 cut(s) 443, 1196
MmeI TCCRAC 1 cut(s) 477
Mox20I TGGCCA 1 cut(s) 970
MroXI GAANNNNTTC 1 cut(s) 1233
MscI TGGCCA 1 cut(s) 970
MseI TTAA 3 cut(s) 318, 942, 1241
MslI CAYNNNNRTG 1 cut(s) 944
Msp20I TGGCCA 1 cut(s) 970
MspI CCGG 9 cut(s) 60, 66, 207, 332, 400, 409, 432, 487, 538
MspR9I CCNGG 2 cut(s) 400, 488
MunI CAATTG 1 cut(s) 972
Mva1269I GAATGC 1 cut(s) 964
MvnI CGCG 2 cut(s) 90, 1014
MwoI GCNNNNNNNGC 9 cut(s) 40, 53, 69, 275, 284, 409, 508, 630, 1183
NciI CCSGG 2 cut(s) 400, 488
NcoI CCATGG 1 cut(s) 965
NdeII GATC 4 cut(s) 7, 339, 369, 1020
NlaIII CATG 3 cut(s) 460, 907, 969
NlaIV GGNNCC 1 cut(s) 64
NmeAIII GCCGAG 4 cut(s) 118, 254, 523, 899
NmuCI GTSAC 1 cut(s) 979
NruI TCGCGA 1 cut(s) 1014
PcsI WCGNNNNNNNCGW 3 cut(s) 387, 402, 567
PctI GAATGC 1 cut(s) 964
PdmI GAANNNNTTC 1 cut(s) 1233
PfeI GAWTC 3 cut(s) 215, 355, 802
PfoI TCCNGGA 1 cut(s) 486
PinAI ACCGGT 1 cut(s) 206
PleI GAGTC 2 cut(s) 443, 1196
PmaCI CACGTG 1 cut(s) 421
PmlI CACGTG 1 cut(s) 421
PpsI GAGTC 2 cut(s) 443, 1196
Ppu21I YACGTR 1 cut(s) 421
PshBI ATTAAT 1 cut(s) 318
Psp1406I AACGTT 1 cut(s) 1003
PspCI CACGTG 1 cut(s) 421
PspFI CCCAGC 2 cut(s) 748, 779
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 931
PstNI CAGNNNCTG 3 cut(s) 43, 748, 1183
PsuI RGATCY 2 cut(s) 7, 1020
RruI TCGCGA 1 cut(s) 1014
RseI CAYNNNNRTG 1 cut(s) 944
SalI GTCGAC 1 cut(s) 446
SaqAI TTAA 3 cut(s) 318, 942, 1241
Sau3AI GATC 4 cut(s) 7, 339, 369, 1020
Sau96I GGNCC 1 cut(s) 931
SchI GAGTC 2 cut(s) 443, 1196
ScrFI CCNGG 2 cut(s) 400, 488
SduI GDGCHC 1 cut(s) 814
SfaNI GCATC 1 cut(s) 832
SinI GGWCC 1 cut(s) 931
SmiMI CAYNNNNRTG 1 cut(s) 944
Sse9I AATT 4 cut(s) 143, 673, 789, 972
SspMI CTAG 1 cut(s) 920
StyD4I CCNGG 2 cut(s) 398, 486
StyI CCWWGG 1 cut(s) 965
TaaI ACNGT 1 cut(s) 1034
TaiI ACGT 3 cut(s) 263, 423, 1006
TaqI TCGA 7 cut(s) 309, 405, 441, 447, 629, 678, 1066
TasI AATT 4 cut(s) 143, 673, 789, 972
TfiI GAWTC 3 cut(s) 215, 355, 802
Tru1I TTAA 3 cut(s) 318, 942, 1241
Tru9I TTAA 3 cut(s) 318, 942, 1241
TscAI CASTG 1 cut(s) 1039
TseFI GTSAC 1 cut(s) 979
TseI GCWGC 5 cut(s) 69, 364, 724, 900, 923
Tsp45I GTSAC 1 cut(s) 979
TspDTI ATGAA 4 cut(s) 680, 708, 920, 1064
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 1 cut(s) 1039
VpaK11BI GGWCC 1 cut(s) 931
VspI ATTAAT 1 cut(s) 318
XmiI GTMKAC 1 cut(s) 447
XmnI GAANNNNTTC 1 cut(s) 1233
XspI CTAG 1 cut(s) 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.