Rmu_sc0009276.1_g000007

Pre-mRNA-splicing factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009276.1
Physical Location & Seq
Forward (+)
37656 .. 39434
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009276.1_g000007.1.cds

Sequence Viewer

Length: 1263 bp
atggaggatctaaagaaagagatagaggccaagcggcagaggctggcggaggcggcgaccggcaccggcagcaagcgatatttcaatcgcgccgagatggaaaagaagcaaatccagaagaagcgggaggaagagaagcgcgaattagaagccaaagccaaatccaagcgccaatccgccgccgcctcctcctcctcctccgccgccgcaaccggtggggattcaacttccaaatcaaaccctaacgccgccgctgccaccaccacctccgccgcgccctcggcttctaaagccctaaccgacgagcagaaaatcgacctgattaatatccccaagccggaagtgatccgccgcctcaggattctcaagcagccgatcactctcttcggcgaggacgacgacgcccggctcgaccggctgaagcacgtgttgaagaccggaatgttcgaggtcgactccgacatgacggaggggcagaccaacgatttcctccgggatatcgccgagctgaggaagcggcagaagtcggggattgtgagtgaccggaagaggaagaactccgaggtcgtggacggcgtggtggaggacggcgagggtggggtgagggaagatgagcttgacggcgacggcgggtcgagcggagctgatgtggatagggacttgaagctaatgaaggcgaatttcgatgagttgtgcgatgaagataagattttggtgttcttcaagaggctgctgagtgaatggaaacaggagctgggtcagatgacggcggctgacaggcgagctgggaagaaaattgcgacgttgaatcaatgtgctcgctacttgcatcccttgttcaagttttgcaggaagaaggttcttccagatgatattcgccgagcgttgatggtggtggttgattgctgcatgaagcgagactacctagccgcaatggaccaatacattaagatggctattgggaatgcaccatggccaattggtgtcactatggttggtatccacgaacgttcagctcgcgagaagatctacaccaacagtgtggctcatattatgaatgatgagacaactcgaaaatacttgcagtctgtgaaaagattgatgaccttttgtcagcgacgctacccaactatgccatcaaaagctgttgagttcaacagcttggctaatggtagtgacttgcagtctctgctacaaatggagactgactctggcagtagtcaagtctttgaggaaaggcttcggttaatgcctgctccttag

Protein Analysis

420

Amino Acids

47.18

Weight (kDa)

8.98

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03140
fragaria_vesca FvH4_2g23380
malus_domestica MD03G1263300.v1.1 MD11G1284100.v1.1
prunus_persica Prupe.8G239700_v2.0.a1
pyrus_communis pycom03g21080
rosa_chinensis RchiOBHm_Chr6g0290841
rosa_laevigata RLG00000012169
rosa_multiflora Rmu_sc0009276.1_g000007
rosa_roxburghii Rroxscaffold_7G00176700
rosa_rugosa Rorug06G0215100
rosa_samantha Rh6AG325700 Rh6BG333400 Rh6CG339100 Rh6DG326400
rosa_wichuraiana Rw6G028320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 62
AccBSI CCGCTC 1 cut(s) 639
AccI GTMKAC 1 cut(s) 453
AccII CGCG 4 cut(s) 90, 141, 275, 1020
AclI AACGTT 1 cut(s) 1009
AclWI GGATC 2 cut(s) 15, 340
AcoI YGGCCR 1 cut(s) 974
AcsI RAATTY 1 cut(s) 679
AcuI CTGAAG 1 cut(s) 440
AcvI CACGTG 1 cut(s) 427
AcyI GRCGYC 1 cut(s) 402
AfiI CCNNNNNNNGG 2 cut(s) 337, 510
AflIII ACRYGT 1 cut(s) 426
AgeI ACCGGT 1 cut(s) 212
AgsI TTSAA 8 cut(s) 85, 225, 433, 664, 724, 808, 841, 1156
AhdI GACNNNNNGTC 3 cut(s) 631, 1110, 1183
AluBI AGCT 9 cut(s) 508, 616, 644, 667, 754, 785, 1016, 1145, 1161
AluI AGCT 9 cut(s) 508, 616, 644, 667, 754, 785, 1016, 1145, 1161
Alw21I GWGCWC 1 cut(s) 820
Alw26I GTCTC 4 cut(s) 912, 1058, 1191, 1196
AlwI GGATC 2 cut(s) 15, 340
AlwNI CAGNNNCTG 3 cut(s) 43, 754, 1189
AoxI GGCC 2 cut(s) 27, 974
ApeKI GCWGC 5 cut(s) 69, 254, 370, 730, 906
ApoI RAATTY 1 cut(s) 679
AseI ATTAAT 1 cut(s) 324
AsiGI ACCGGT 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 1239
AspLEI GCGC 4 cut(s) 92, 141, 171, 277
AspS9I GGNCC 1 cut(s) 937
AsuC2I CCSGG 2 cut(s) 406, 494
AsuHPI GGTGA 1 cut(s) 613
AvaII GGWCC 1 cut(s) 937
AxyI CCTNAGG 1 cut(s) 356
BalI TGGCCA 1 cut(s) 976
BanI GGYRCC 1 cut(s) 62
BarI GAAGNNNNNNTAC 2 cut(s) 905, 937
BbrPI CACGTG 1 cut(s) 427
BbsI GAAGAC 1 cut(s) 440
Bbv12I GWGCWC 1 cut(s) 820
BbvCI CCTCAGC 1 cut(s) 509
BbvI GCAGC 5 cut(s) 81, 241, 382, 717, 893
BccI CCATC 4 cut(s) 91, 883, 946, 1144
BceAI ACGGC 5 cut(s) 589, 604, 637, 643, 783
BciVI GTATCC 1 cut(s) 1010
BcnI CCSGG 2 cut(s) 406, 494
BcoDI GTCTC 4 cut(s) 912, 1058, 1191, 1196
BfaI CTAG 1 cut(s) 926
BfoI RGCGCY 1 cut(s) 172
BfuI GTATCC 1 cut(s) 1010
BglII AGATCT 1 cut(s) 1026
Bme1390I CCNGG 2 cut(s) 406, 494
Bme18I GGWCC 1 cut(s) 937
BmeRI GACNNNNNGTC 3 cut(s) 631, 1110, 1183
BmgT120I GGNCC 1 cut(s) 937
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 2 cut(s) 406, 494
BmsI GCATC 1 cut(s) 838
BpiI GAAGAC 1 cut(s) 440
BplI GAGNNNNNCTC 4 cut(s) 440, 472, 1193, 1225
Bpu10I CCTNAGC 1 cut(s) 509
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 2 cut(s) 406, 494
BsaAI YACGTR 1 cut(s) 427
BsaBI GATNNNNATC 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 402
BsaJI CCNNGG 3 cut(s) 279, 561, 971
BsaWI WCCGGW 3 cut(s) 212, 437, 543
BsaXI ACNNNNNCTCC 2 cut(s) 633, 663
Bsc4I CCNNNNNNNGG 2 cut(s) 337, 510
Bse118I RCCGGY 4 cut(s) 59, 65, 212, 414
Bse21I CCTNAGG 1 cut(s) 356
Bse3DI GCAATG 1 cut(s) 939
Bse8I GATNNNNATC 1 cut(s) 326
BseDI CCNNGG 3 cut(s) 279, 561, 971
BseGI GGATG 1 cut(s) 829
BseJI GATNNNNATC 1 cut(s) 326
BseLI CCNNNNNNNGG 2 cut(s) 337, 510
BseMI GCAATG 1 cut(s) 939
BseMII CTCAG 3 cut(s) 370, 500, 725
BseRI GAGGAG 4 cut(s) 178, 181, 184, 187
BseXI GCAGC 5 cut(s) 81, 241, 382, 717, 893
BseYI CCCAGC 2 cut(s) 754, 785
Bsh1236I CGCG 4 cut(s) 90, 141, 275, 1020
Bsh1285I CGRYCG 2 cut(s) 60, 415
BshFI GGCC 2 cut(s) 29, 976
BshNI GGYRCC 1 cut(s) 62
BshTI ACCGGT 1 cut(s) 212
BsiEI CGRYCG 2 cut(s) 60, 415
BsiHKAI GWGCWC 1 cut(s) 820
BsiSI CCGG 9 cut(s) 60, 66, 213, 338, 406, 415, 438, 493, 544
BslFI GGGAC 1 cut(s) 671
BslI CCNNNNNNNGG 2 cut(s) 337, 510
BsmAI GTCTC 4 cut(s) 912, 1058, 1191, 1196
BsmFI GGGAC 1 cut(s) 671
BsmI GAATGC 1 cut(s) 970
BsnI GGCC 2 cut(s) 29, 976
Bsp1286I GDGCHC 1 cut(s) 820
Bsp143I GATC 4 cut(s) 7, 345, 375, 1026
Bsp19I CCATGG 1 cut(s) 971
Bsp68I TCGCGA 1 cut(s) 1020
BspANI GGCC 2 cut(s) 29, 976
BspCNI CTCAG 3 cut(s) 369, 501, 726
BspFNI CGCG 4 cut(s) 90, 141, 275, 1020
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 2 cut(s) 15, 340
BspT107I GGYRCC 1 cut(s) 62
BsrBI CCGCTC 1 cut(s) 639
BsrDI GCAATG 1 cut(s) 939
BsrFI RCCGGY 4 cut(s) 59, 65, 212, 414
BssAI RCCGGY 4 cut(s) 59, 65, 212, 414
BssECI CCNNGG 3 cut(s) 279, 561, 971
BssMI GATC 4 cut(s) 7, 345, 375, 1026
BssNI GRCGYC 1 cut(s) 402
BssT1I CCWWGG 1 cut(s) 971
Bst4CI ACNGT 1 cut(s) 1040
Bst6I CTCTTC 3 cut(s) 126, 389, 542
BstACI GRCGYC 1 cut(s) 402
BstAPI GCANNNNNTGC 1 cut(s) 1189
BstBAI YACGTR 1 cut(s) 427
BstC8I GCNNGC 6 cut(s) 45, 74, 783, 820, 1018, 1254
BstDEI CTNAG 4 cut(s) 356, 509, 734, 1260
BstDSI CCRYGG 1 cut(s) 971
BstF5I GGATG 1 cut(s) 829
BstFNI CGCG 4 cut(s) 90, 141, 275, 1020
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 4 cut(s) 92, 141, 171, 277
BstKTI GATC 4 cut(s) 10, 348, 378, 1029
BstMAI GTCTC 4 cut(s) 912, 1058, 1191, 1196
BstMBI GATC 4 cut(s) 7, 345, 375, 1026
BstMCI CGRYCG 2 cut(s) 60, 415
BstSCI CCNGG 2 cut(s) 404, 492
BstUI CGCG 4 cut(s) 90, 141, 275, 1020
BstV1I GCAGC 5 cut(s) 81, 241, 382, 717, 893
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 2 cut(s) 7, 1026
BstXI CCANNNNNNTGG 1 cut(s) 1042
BstYI RGATCY 2 cut(s) 7, 1026
Bsu36I CCTNAGG 1 cut(s) 356
BsuI GTATCC 1 cut(s) 1010
BsuRI GGCC 2 cut(s) 29, 976
BtgI CCRYGG 1 cut(s) 971
BtgZI GCGATG 1 cut(s) 711
BtsCI GGATG 1 cut(s) 829
BtsIMutI CAGTG 1 cut(s) 1045
BtuMI TCGCGA 1 cut(s) 1020
Cac8I GCNNGC 6 cut(s) 45, 74, 783, 820, 1018, 1254
CaiI CAGNNNCTG 3 cut(s) 43, 754, 1189
CfoI GCGC 4 cut(s) 92, 141, 171, 277
Cfr10I RCCGGY 4 cut(s) 59, 65, 212, 414
Cfr13I GGNCC 1 cut(s) 937
CseI GACGC 2 cut(s) 410, 1128
CspAI ACCGGT 1 cut(s) 212
CviAII CATG 3 cut(s) 463, 910, 972
DdeI CTNAG 4 cut(s) 356, 509, 734, 1260
DpnI GATC 4 cut(s) 9, 347, 377, 1028
DpnII GATC 4 cut(s) 7, 345, 375, 1026
DriI GACNNNNNGTC 3 cut(s) 631, 1110, 1183
EaeI YGGCCR 1 cut(s) 974
Eam1104I CTCTTC 3 cut(s) 126, 389, 542
Eam1105I GACNNNNNGTC 3 cut(s) 631, 1110, 1183
EarI CTCTTC 3 cut(s) 126, 389, 542
EciI GGCGGA 5 cut(s) 62, 166, 190, 259, 338
Eco130I CCWWGG 1 cut(s) 971
Eco32I GATATC 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 937
Eco57I CTGAAG 1 cut(s) 440
Eco72I CACGTG 1 cut(s) 427
Eco81I CCTNAGG 1 cut(s) 356
EcoRV GATATC 1 cut(s) 499
EcoT14I CCWWGG 1 cut(s) 971
ErhI CCWWGG 1 cut(s) 971
FaeI CATG 3 cut(s) 466, 913, 975
FaiI YATR 7 cut(s) 464, 911, 973, 992, 1050, 1055, 1133
FalI AAGNNNNNCTT 2 cut(s) 600, 632
FaqI GGGAC 1 cut(s) 671
FatI CATG 3 cut(s) 462, 909, 971
FauI CCCGC 2 cut(s) 117, 623
FblI GTMKAC 1 cut(s) 453
FokI GGATG 1 cut(s) 816
FspBI CTAG 1 cut(s) 926
GlaI GCGC 4 cut(s) 91, 140, 170, 276
GsaI CCCAGC 2 cut(s) 758, 789
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 2 cut(s) 29, 976
HapII CCGG 9 cut(s) 60, 66, 213, 338, 406, 415, 438, 493, 544
HgaI GACGC 2 cut(s) 410, 1128
HhaI GCGC 4 cut(s) 92, 141, 171, 277
Hin1I GRCGYC 1 cut(s) 402
Hin1II CATG 3 cut(s) 466, 913, 975
Hin6I GCGC 4 cut(s) 90, 139, 169, 275
HinP1I GCGC 4 cut(s) 90, 139, 169, 275
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HinfI GANTC 5 cut(s) 221, 361, 455, 808, 1208
HpaII CCGG 9 cut(s) 60, 66, 213, 338, 406, 415, 438, 493, 544
HphI GGTGA 1 cut(s) 613
Hpy166II GTNNAC 2 cut(s) 454, 571
Hpy188I TCNGA 3 cut(s) 460, 562, 762
Hpy188III TCNNGA 5 cut(s) 115, 358, 724, 866, 1019
Hpy8I GTNNAC 2 cut(s) 454, 571
Hpy99I CGWCG 6 cut(s) 305, 401, 404, 629, 805, 1122
HpyAV CCTTC 2 cut(s) 667, 850
HpyCH4III ACNGT 1 cut(s) 1040
HpyCH4IV ACGT 3 cut(s) 426, 803, 1009
HpyCH4V TGCA 6 cut(s) 829, 849, 909, 968, 1084, 1183
HpyF3I CTNAG 4 cut(s) 356, 509, 734, 1260
HpySE526I ACGT 3 cut(s) 426, 803, 1009
Hsp92I GRCGYC 1 cut(s) 402
Hsp92II CATG 3 cut(s) 466, 913, 975
HspAI GCGC 4 cut(s) 90, 139, 169, 275
Kzo9I GATC 4 cut(s) 7, 345, 375, 1026
LmnI GCTCC 3 cut(s) 641, 751, 1261
Lsp1109I GCAGC 5 cut(s) 81, 241, 382, 717, 893
LweI GCATC 1 cut(s) 838
MaeI CTAG 1 cut(s) 926
MaeII ACGT 3 cut(s) 426, 803, 1009
MaeIII GTNAC 3 cut(s) 539, 985, 1175
MalI GATC 4 cut(s) 9, 347, 377, 1028
MbiI CCGCTC 1 cut(s) 639
MboI GATC 4 cut(s) 7, 345, 375, 1026
MfeI CAATTG 1 cut(s) 978
MflI RGATCY 2 cut(s) 7, 1026
MhlI GDGCHC 1 cut(s) 820
MlsI TGGCCA 1 cut(s) 976
MluCI AATT 4 cut(s) 143, 679, 795, 978
MluNI TGGCCA 1 cut(s) 976
MlyI GAGTC 2 cut(s) 449, 1202
MmeI TCCRAC 1 cut(s) 483
Mox20I TGGCCA 1 cut(s) 976
MroXI GAANNNNTTC 1 cut(s) 1239
MscI TGGCCA 1 cut(s) 976
MseI TTAA 3 cut(s) 324, 948, 1247
MslI CAYNNNNRTG 1 cut(s) 950
Msp20I TGGCCA 1 cut(s) 976
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 9 cut(s) 60, 66, 213, 338, 406, 415, 438, 493, 544
MspR9I CCNGG 2 cut(s) 406, 494
MunI CAATTG 1 cut(s) 978
Mva1269I GAATGC 1 cut(s) 970
MvnI CGCG 4 cut(s) 90, 141, 275, 1020
NciI CCSGG 2 cut(s) 406, 494
NcoI CCATGG 1 cut(s) 971
NdeII GATC 4 cut(s) 7, 345, 375, 1026
NlaIII CATG 3 cut(s) 466, 913, 975
NlaIV GGNNCC 1 cut(s) 64
NmeAIII GCCGAG 4 cut(s) 118, 260, 529, 905
NmuCI GTSAC 3 cut(s) 539, 985, 1175
NruI TCGCGA 1 cut(s) 1020
PcsI WCGNNNNNNNCGW 3 cut(s) 393, 408, 573
PctI GAATGC 1 cut(s) 970
PdmI GAANNNNTTC 1 cut(s) 1239
PfeI GAWTC 3 cut(s) 221, 361, 808
PfoI TCCNGGA 1 cut(s) 492
PinAI ACCGGT 1 cut(s) 212
PleI GAGTC 2 cut(s) 449, 1202
PmaCI CACGTG 1 cut(s) 427
PmlI CACGTG 1 cut(s) 427
PpsI GAGTC 2 cut(s) 449, 1202
Ppu21I YACGTR 1 cut(s) 427
PshBI ATTAAT 1 cut(s) 324
Psp1406I AACGTT 1 cut(s) 1009
PspCI CACGTG 1 cut(s) 427
PspFI CCCAGC 2 cut(s) 754, 785
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 937
PstNI CAGNNNCTG 3 cut(s) 43, 754, 1189
PsuI RGATCY 2 cut(s) 7, 1026
RruI TCGCGA 1 cut(s) 1020
RseI CAYNNNNRTG 1 cut(s) 950
SalI GTCGAC 1 cut(s) 452
SaqAI TTAA 3 cut(s) 324, 948, 1247
Sau3AI GATC 4 cut(s) 7, 345, 375, 1026
Sau96I GGNCC 1 cut(s) 937
SchI GAGTC 2 cut(s) 449, 1202
ScrFI CCNGG 2 cut(s) 406, 494
SduI GDGCHC 1 cut(s) 820
SfaNI GCATC 1 cut(s) 838
SinI GGWCC 1 cut(s) 937
SmiMI CAYNNNNRTG 1 cut(s) 950
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 4 cut(s) 143, 679, 795, 978
SspMI CTAG 1 cut(s) 926
StyD4I CCNGG 2 cut(s) 404, 492
StyI CCWWGG 1 cut(s) 971
TaaI ACNGT 1 cut(s) 1040
TaiI ACGT 3 cut(s) 429, 806, 1012
TaqI TCGA 7 cut(s) 315, 411, 447, 453, 635, 684, 1072
TasI AATT 4 cut(s) 143, 679, 795, 978
TfiI GAWTC 3 cut(s) 221, 361, 808
Tru1I TTAA 3 cut(s) 324, 948, 1247
Tru9I TTAA 3 cut(s) 324, 948, 1247
TscAI CASTG 1 cut(s) 1045
TseFI GTSAC 3 cut(s) 539, 985, 1175
TseI GCWGC 5 cut(s) 69, 254, 370, 730, 906
Tsp45I GTSAC 3 cut(s) 539, 985, 1175
TspDTI ATGAA 4 cut(s) 686, 714, 926, 1070
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 1 cut(s) 1045
VpaK11BI GGWCC 1 cut(s) 937
VspI ATTAAT 1 cut(s) 324
XapI RAATTY 1 cut(s) 679
XmiI GTMKAC 1 cut(s) 453
XmnI GAANNNNTTC 1 cut(s) 1239
XspI CTAG 1 cut(s) 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.