AT1G03457

CUGBP Elav-like family member

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
860761 .. 864372
3612 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G03457.3

Sequence Viewer

Length: 1290 bp
ATGGCGGAGGAGACGATGGAGAACGAAGAGAGGGTGAAGCTGTTCGTCGGACAAGTTCCGAAGCACATGACGGAGATTCAGCTCCTCACATTGTTTCGAGAATTCTCCATCGTCAATGAAGTCAACATCATTAAAGAGAAGACAACACGAGCTCCTCGAGGATGTTGTTTTCTGACATGTCCTACAAGGGAAGATGCTGACAAGGTGATCAATAGTTTTCATAACAAGAAGACATTGCCTGGGGCATCTAGTCCGTTGCAAGTTAAGTATGCAGATGGCGAGTTGGAAAGACTAGAGCACAAACTTTTCGTCGGTATGCTTCCAAAGAATGTCTCTGAAACTGAAGTCCAGTCCTTATTCTCTGAATACGGAACCATTAAGGATCTACAGATTCTAAGAGGGTCTCTACAAACTAGCAAAGGCTGTCTGTTTCTAAAGTACGAGTCTAAAGAACAAGCGGTCGCAGCTATGGAAGCCCTCAACGGAAGACATATAATGGAGGGAGCAAATGTTCCTTTGATTGTTAAATGGGCAGACACAGAAAAGGAAAGACAAGCTCGAAGACTTCTAAAAGTTCAATCTCATGTCTCCAGACTCGATCCGCAAAACCCCTCCATGTTTGGAGCATTACCTATGAGTTATGTTCCTCCTTACAATGGATATGGCTATCATGTGCCTGGAACTTATGGCTACATGCTACCACCTATCCAGACTCAACATGCATTTCACAATGTGATTTCACCTAACCAAGGTAACGGCAGGGCATTGCAGGGAACCGCTTTGACAGAGTCTGTCCCACCACGTTTGGCCCCCCGCAGAAACTTCCCAACGGCTCTTGGAAATTACGGTTACCATGGTCTTCAATATCCTATGGCATTTCCTAGAGGGATGATACCTCCTCGCCTTCCTCTAACCACAGTTTCACCTGGAATTTCTAATAACGGCACATCGATACCTTCCTCGCTTCAAACAGAAGGACCAGCAGGTGCGAATCTATTTATTTATAACATACCTCGGGAATTCGAGGATCAAGAACTCGCGGCTACGTTTCAACCTTTTGGTAAGGTTCTAAGCGCCAAGGTGTTTGTAGACAAGGCCACTGGTATAAGCAAATGTTTCGGATTCATTAGTTATGACTCACAGGCAGCTGCTCAGAACGCTATTAACACAATGAACGGTTGCCAATTAAGCGGTAAGAAATTGAAAGTCCAGCTTAAGAGAGACAACGGTCAACAGCAGCAACAACAACAGAGTAAAAACCCGTTATTTAACGGTTTATTAAACTCGTAA

Protein Analysis

429

Amino Acids

47.62

Weight (kDa)

9.11

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 2 - 61 2.1e-12 RNA recognition motif
RRM_1 PF00076 227 - 297 1.3e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1005
AarI CACCTGC 1 cut(s) 974
AbsI CCTCGAGG 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 974
AccI GTMKAC 1 cut(s) 1089
AccII CGCG 1 cut(s) 1040
AciI CCGC 7 cut(s) 5, 458, 602, 777, 814, 1040, 1191
AclWI GGATC 3 cut(s) 390, 593, 1035
AcsI RAATTY 3 cut(s) 101, 930, 1019
AcuI CTGAAG 1 cut(s) 363
AdeI CACNNNGTG 1 cut(s) 733
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 2 cut(s) 656, 749
AflII CTTAAG 1 cut(s) 1214
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 5 cut(s) 578, 863, 968, 1052, 1204
AjnI CCWGG 3 cut(s) 238, 676, 925
AloI GAACNNNNNNTCC 2 cut(s) 495, 527
AluBI AGCT 7 cut(s) 40, 82, 152, 467, 557, 1148, 1213
AluI AGCT 7 cut(s) 40, 82, 152, 467, 557, 1148, 1213
Alw21I GWGCWC 2 cut(s) 154, 300
Alw26I GTCTC 5 cut(s) 5, 337, 408, 592, 1215
AlwI GGATC 3 cut(s) 390, 593, 1035
AlwNI CAGNNNCTG 1 cut(s) 791
Ama87I CYCGRG 2 cut(s) 156, 1014
AoxI GGCC 2 cut(s) 807, 1095
ApeKI GCWGC 4 cut(s) 464, 1145, 1148, 1237
ApoI RAATTY 3 cut(s) 101, 930, 1019
ArsI GACNNNNNNTTYG 2 cut(s) 294, 326
Asp700I GAANNNNTTC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 1076
AspS9I GGNCC 2 cut(s) 808, 977
AsuHPI GGTGA 4 cut(s) 46, 217, 732, 915
AvaI CYCGRG 2 cut(s) 156, 1014
AvaII GGWCC 1 cut(s) 977
BanII GRGCYC 1 cut(s) 154
BauI CACGAG 1 cut(s) 147
BbsI GAAGAC 5 cut(s) 146, 236, 493, 568, 851
Bbv12I GWGCWC 2 cut(s) 154, 300
BbvI GCAGC 4 cut(s) 476, 1135, 1157, 1249
BccI CCATC 3 cut(s) 10, 116, 269
BceAI ACGGC 3 cut(s) 772, 846, 958
BcgI CGANNNNNNTGC 2 cut(s) 1099, 1133
BciT130I CCWGG 3 cut(s) 240, 678, 927
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 5 cut(s) 5, 337, 408, 592, 1215
BfaI CTAG 4 cut(s) 249, 293, 414, 882
BfmI CTRYAG 1 cut(s) 386
BfoI RGCGCY 1 cut(s) 1077
BfrI CTTAAG 1 cut(s) 1214
BfuAI ACCTGC 1 cut(s) 974
BisI GCNGC 5 cut(s) 465, 1041, 1146, 1149, 1238
BlsI GCNGC 5 cut(s) 466, 1042, 1147, 1150, 1239
Bme1390I CCNGG 3 cut(s) 240, 678, 927
Bme18I GGWCC 1 cut(s) 977
BmeT110I CYCGRG 2 cut(s) 156, 1014
BmgT120I GGNCC 2 cut(s) 808, 977
BmiI GGNNCC 3 cut(s) 373, 775, 810
BmrFI CCNGG 3 cut(s) 240, 678, 927
BmsI GCATC 2 cut(s) 184, 254
BoxI GACNNNNGTC 1 cut(s) 1227
BpiI GAAGAC 5 cut(s) 146, 236, 493, 568, 851
BpmI CTGGAG 1 cut(s) 574
Bsa29I ATCGAT 1 cut(s) 950
BsaI GGTCTC 1 cut(s) 408
BsaJI CCNNGG 5 cut(s) 239, 748, 853, 1013, 1077
BsaXI ACNNNNNCTCC 4 cut(s) 136, 166, 495, 525
Bsc4I CCNNNNNNNGG 2 cut(s) 656, 749
Bse1I ACTGG 2 cut(s) 349, 1105
Bse3DI GCAATG 2 cut(s) 233, 764
BseBI CCWGG 3 cut(s) 240, 678, 927
BseCI ATCGAT 1 cut(s) 950
BseDI CCNNGG 5 cut(s) 239, 748, 853, 1013, 1077
BseGI GGATG 2 cut(s) 167, 894
BseLI CCNNNNNNNGG 2 cut(s) 656, 749
BseMI GCAATG 2 cut(s) 233, 764
BseMII CTCAG 1 cut(s) 1166
BseNI ACTGG 2 cut(s) 349, 1105
BseRI GAGGAG 4 cut(s) 23, 74, 144, 888
BseXI GCAGC 4 cut(s) 476, 1135, 1157, 1249
Bsh1236I CGCG 1 cut(s) 1040
Bsh1285I CGRYCG 1 cut(s) 462
BshFI GGCC 2 cut(s) 809, 1097
BshVI ATCGAT 1 cut(s) 950
BsiEI CGRYCG 1 cut(s) 462
BsiHKAI GWGCWC 2 cut(s) 154, 300
BsiHKCI CYCGRG 2 cut(s) 156, 1014
BslFI GGGAC 1 cut(s) 779
BslI CCNNNNNNNGG 2 cut(s) 656, 749
BsmAI GTCTC 5 cut(s) 5, 337, 408, 592, 1215
BsmBI CGTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 779
BsnI GGCC 2 cut(s) 809, 1097
Bso31I GGTCTC 1 cut(s) 408
BsoBI CYCGRG 2 cut(s) 156, 1014
Bsp1286I GDGCHC 2 cut(s) 154, 300
Bsp143I GATC 4 cut(s) 207, 382, 598, 1027
Bsp19I CCATGG 1 cut(s) 853
BspACI CCGC 7 cut(s) 5, 458, 602, 777, 814, 1040, 1191
BspANI GGCC 2 cut(s) 809, 1097
BspCNI CTCAG 1 cut(s) 1165
BspDI ATCGAT 1 cut(s) 950
BspFNI CGCG 1 cut(s) 1040
BspLI GGNNCC 3 cut(s) 373, 775, 810
BspMI ACCTGC 1 cut(s) 974
BspPI GGATC 3 cut(s) 390, 593, 1035
BspTI CTTAAG 1 cut(s) 1214
BspTNI GGTCTC 1 cut(s) 408
BsrDI GCAATG 2 cut(s) 233, 764
BsrI ACTGG 2 cut(s) 349, 1105
BssECI CCNNGG 5 cut(s) 239, 748, 853, 1013, 1077
BssMI GATC 4 cut(s) 207, 382, 598, 1027
BssSI CACGAG 1 cut(s) 147
BssT1I CCWWGG 3 cut(s) 748, 853, 1077
Bst2BI CACGAG 1 cut(s) 147
Bst2UI CCWGG 3 cut(s) 240, 678, 927
Bst4CI ACNGT 5 cut(s) 848, 919, 1178, 1229, 1274
Bst6I CTCTTC 1 cut(s) 21
BstAFI CTTAAG 1 cut(s) 1214
BstDEI CTNAG 3 cut(s) 395, 1070, 1152
BstDSI CCRYGG 1 cut(s) 853
BstEII GGTNACC 1 cut(s) 848
BstENI CCTNNNNNAGG 1 cut(s) 747
BstF5I GGATG 2 cut(s) 167, 894
BstFNI CGCG 1 cut(s) 1040
BstH2I RGCGCY 1 cut(s) 1077
BstHHI GCGC 1 cut(s) 1076
BstKTI GATC 4 cut(s) 210, 385, 601, 1030
BstMAI GTCTC 5 cut(s) 5, 337, 408, 592, 1215
BstMBI GATC 4 cut(s) 207, 382, 598, 1027
BstMCI CGRYCG 1 cut(s) 462
BstMWI GCNNNNNNNGC 4 cut(s) 464, 473, 1157, 1188
BstNI CCWGG 3 cut(s) 240, 678, 927
BstNSI RCATGY 3 cut(s) 180, 697, 722
BstPAI GACNNNNGTC 1 cut(s) 1227
BstPI GGTNACC 1 cut(s) 848
BstSCI CCNGG 3 cut(s) 238, 676, 925
BstSFI CTRYAG 1 cut(s) 386
BstUI CGCG 1 cut(s) 1040
BstV1I GCAGC 4 cut(s) 476, 1135, 1157, 1249
BstV2I GAAGAC 5 cut(s) 146, 236, 493, 568, 851
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
Bsu15I ATCGAT 1 cut(s) 950
BsuRI GGCC 2 cut(s) 809, 1097
BsuTUI ATCGAT 1 cut(s) 950
BtgI CCRYGG 1 cut(s) 853
BtsCI GGATG 2 cut(s) 167, 894
BtsIMutI CAGTG 1 cut(s) 1098
BveI ACCTGC 1 cut(s) 974
CaiI CAGNNNCTG 1 cut(s) 791
CfoI GCGC 1 cut(s) 1076
Cfr13I GGNCC 2 cut(s) 808, 977
ClaI ATCGAT 1 cut(s) 950
Csp6I GTAC 1 cut(s) 439
CspCI CAANNNNNGTGG 2 cut(s) 786, 821
CviAII CATG 8 cut(s) 67, 177, 584, 616, 671, 694, 719, 854
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 3 cut(s) 395, 1070, 1152
DpnI GATC 4 cut(s) 209, 384, 600, 1029
DpnII GATC 4 cut(s) 207, 382, 598, 1027
DraIII CACNNNGTG 1 cut(s) 733
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 152
Eco130I CCWWGG 3 cut(s) 748, 853, 1077
Eco24I GRGCYC 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 977
Eco53kI GAGCTC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 363
Eco88I CYCGRG 2 cut(s) 156, 1014
Eco91I GGTNACC 1 cut(s) 848
EcoICRI GAGCTC 1 cut(s) 152
EcoNI CCTNNNNNAGG 1 cut(s) 747
EcoO65I GGTNACC 1 cut(s) 848
EcoRI GAATTC 2 cut(s) 101, 1019
EcoRII CCWGG 3 cut(s) 238, 676, 925
EcoT14I CCWWGG 3 cut(s) 748, 853, 1077
EcoT22I ATGCAT 1 cut(s) 724
EcoT38I GRGCYC 1 cut(s) 154
ErhI CCWWGG 3 cut(s) 748, 853, 1077
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 8 cut(s) 70, 180, 587, 619, 674, 697, 722, 857
FalI AAGNNNNNCTT 2 cut(s) 1197, 1229
FaqI GGGAC 1 cut(s) 779
FatI CATG 8 cut(s) 66, 176, 583, 615, 670, 693, 718, 853
FauI CCCGC 1 cut(s) 821
FbaI TGATCA 1 cut(s) 207
FblI GTMKAC 1 cut(s) 1089
Fnu4HI GCNGC 5 cut(s) 465, 1041, 1146, 1149, 1238
FokI GGATG 2 cut(s) 174, 901
FriOI GRGCYC 1 cut(s) 154
Fsp4HI GCNGC 5 cut(s) 465, 1041, 1146, 1149, 1238
FspBI CTAG 4 cut(s) 249, 293, 414, 882
GlaI GCGC 1 cut(s) 1075
GluI GCNGC 5 cut(s) 465, 1041, 1146, 1149, 1238
GsuI CTGGAG 1 cut(s) 574
HaeII RGCGCY 1 cut(s) 1077
HaeIII GGCC 2 cut(s) 809, 1097
HhaI GCGC 1 cut(s) 1076
Hin1II CATG 8 cut(s) 70, 180, 587, 619, 674, 697, 722, 857
Hin6I GCGC 1 cut(s) 1074
HinP1I GCGC 1 cut(s) 1074
HincII GTYRAC 2 cut(s) 124, 1232
HindII GTYRAC 2 cut(s) 124, 1232
HinfI GANTC 9 cut(s) 76, 391, 443, 594, 712, 788, 991, 1122, 1136
HphI GGTGA 4 cut(s) 46, 217, 732, 915
Hpy166II GTNNAC 3 cut(s) 124, 1090, 1232
Hpy188I TCNGA 7 cut(s) 50, 60, 174, 337, 364, 1121, 1155
Hpy188III TCNNGA 5 cut(s) 98, 591, 709, 1016, 1031
Hpy8I GTNNAC 3 cut(s) 124, 1090, 1232
Hpy99I CGWCG 2 cut(s) 50, 314
HpyAV CCTTC 3 cut(s) 914, 966, 968
HpyCH4III ACNGT 5 cut(s) 848, 919, 1178, 1229, 1274
HpyCH4IV ACGT 2 cut(s) 802, 1046
HpyCH4V TGCA 4 cut(s) 259, 272, 722, 769
HpyF10VI GCNNNNNNNGC 4 cut(s) 464, 473, 1157, 1188
HpyF3I CTNAG 3 cut(s) 395, 1070, 1152
HpySE526I ACGT 2 cut(s) 802, 1046
Hsp92II CATG 8 cut(s) 70, 180, 587, 619, 674, 697, 722, 857
HspAI GCGC 1 cut(s) 1074
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 4 cut(s) 207, 382, 598, 1027
LmnI GCTCC 4 cut(s) 87, 157, 503, 623
Lsp1109I GCAGC 4 cut(s) 476, 1135, 1157, 1249
LweI GCATC 2 cut(s) 184, 254
MaeI CTAG 4 cut(s) 249, 293, 414, 882
MaeII ACGT 2 cut(s) 802, 1046
MaeIII GTNAC 2 cut(s) 752, 848
MalI GATC 4 cut(s) 209, 384, 600, 1029
MboI GATC 4 cut(s) 207, 382, 598, 1027
MboII GAAGA 7 cut(s) 38, 151, 203, 241, 498, 573, 851
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 2 cut(s) 154, 300
MluCI AATT 6 cut(s) 101, 841, 930, 1019, 1184, 1199
MlyI GAGTC 5 cut(s) 452, 588, 706, 797, 1130
MmeI TCCRAC 2 cut(s) 28, 264
Mph1103I ATGCAT 1 cut(s) 724
MroXI GAANNNNTTC 1 cut(s) 41
MseI TTAA 9 cut(s) 132, 264, 378, 525, 1164, 1187, 1215, 1269, 1280
MspA1I CMGCKG 1 cut(s) 1148
MspCI CTTAAG 1 cut(s) 1214
MspR9I CCNGG 3 cut(s) 240, 678, 927
MvaI CCWGG 3 cut(s) 240, 678, 927
MvnI CGCG 1 cut(s) 1040
MwoI GCNNNNNNNGC 4 cut(s) 464, 473, 1157, 1188
NcoI CCATGG 1 cut(s) 853
NdeII GATC 4 cut(s) 207, 382, 598, 1027
NlaIII CATG 8 cut(s) 70, 180, 587, 619, 674, 697, 722, 857
NlaIV GGNNCC 3 cut(s) 373, 775, 810
NsiI ATGCAT 1 cut(s) 724
NspI RCATGY 3 cut(s) 180, 697, 722
PaeR7I CTCGAG 1 cut(s) 156
PaqCI CACCTGC 1 cut(s) 974
PciI ACATGT 1 cut(s) 176
PcsI WCGNNNNNNNCGW 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 4 cut(s) 76, 391, 991, 1122
PflFI GACNNNGTC 1 cut(s) 787
PkrI GCNGC 5 cut(s) 466, 1042, 1147, 1150, 1239
PleI GAGTC 5 cut(s) 451, 588, 706, 796, 1130
PpsI GAGTC 5 cut(s) 451, 588, 706, 796, 1130
PscI ACATGT 1 cut(s) 176
PshAI GACNNNNGTC 1 cut(s) 1227
PsiI TTATAA 1 cut(s) 1005
Psp124BI GAGCTC 1 cut(s) 154
Psp6I CCWGG 3 cut(s) 238, 676, 925
PspEI GGTNACC 1 cut(s) 848
PspGI CCWGG 3 cut(s) 238, 676, 925
PspN4I GGNNCC 3 cut(s) 373, 775, 810
PspPI GGNCC 2 cut(s) 808, 977
PspXI VCTCGAGB 1 cut(s) 156
PstNI CAGNNNCTG 1 cut(s) 791
PsuI RGATCY 1 cut(s) 382
PsyI GACNNNGTC 1 cut(s) 787
PvuII CAGCTG 1 cut(s) 1148
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
SacI GAGCTC 1 cut(s) 154
SaqAI TTAA 9 cut(s) 132, 264, 378, 525, 1164, 1187, 1215, 1269, 1280
SatI GCNGC 5 cut(s) 465, 1041, 1146, 1149, 1238
Sau3AI GATC 4 cut(s) 207, 382, 598, 1027
Sau96I GGNCC 2 cut(s) 808, 977
SchI GAGTC 5 cut(s) 452, 588, 706, 797, 1130
ScrFI CCNGG 3 cut(s) 240, 678, 927
SduI GDGCHC 2 cut(s) 154, 300
SfaNI GCATC 2 cut(s) 184, 254
SfcI CTRYAG 1 cut(s) 386
Sfr274I CTCGAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 977
SlaI CTCGAG 1 cut(s) 156
SmlI CTYRAG 2 cut(s) 156, 1214
SmoI CTYRAG 2 cut(s) 156, 1214
Sse9I AATT 6 cut(s) 101, 841, 930, 1019, 1184, 1199
SsiI CCGC 7 cut(s) 5, 458, 602, 777, 814, 1040, 1191
SspMI CTAG 4 cut(s) 249, 293, 414, 882
SstI GAGCTC 1 cut(s) 154
StyD4I CCNGG 3 cut(s) 238, 676, 925
StyI CCWWGG 3 cut(s) 748, 853, 1077
TaaI ACNGT 5 cut(s) 848, 919, 1178, 1229, 1274
TaiI ACGT 2 cut(s) 805, 1049
TaqI TCGA 6 cut(s) 97, 157, 559, 597, 950, 1023
TasI AATT 6 cut(s) 101, 841, 930, 1019, 1184, 1199
TauI GCSGC 1 cut(s) 1043
TfiI GAWTC 4 cut(s) 76, 391, 991, 1122
Tru1I TTAA 9 cut(s) 132, 264, 378, 525, 1164, 1187, 1215, 1269, 1280
Tru9I TTAA 9 cut(s) 132, 264, 378, 525, 1164, 1187, 1215, 1269, 1280
TscAI CASTG 1 cut(s) 1105
TseI GCWGC 4 cut(s) 464, 1145, 1148, 1237
TspDTI ATGAA 4 cut(s) 132, 209, 1114, 1187
TspGWI ACGGA 4 cut(s) 86, 243, 384, 498
TspRI CASTG 1 cut(s) 1105
Tth111I GACNNNGTC 1 cut(s) 787
Vha464I CTTAAG 1 cut(s) 1214
VpaK11BI GGWCC 1 cut(s) 977
XagI CCTNNNNNAGG 1 cut(s) 747
XapI RAATTY 3 cut(s) 101, 930, 1019
XceI RCATGY 3 cut(s) 180, 697, 722
XhoI CTCGAG 1 cut(s) 156
XmiI GTMKAC 1 cut(s) 1089
XmnI GAANNNNTTC 1 cut(s) 41
XspI CTAG 4 cut(s) 249, 293, 414, 882
Zsp2I ATGCAT 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.