AT4G03110

CUGBP Elav-like family member

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
1376306 .. 1379747
3442 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03110.1

Sequence Viewer

Length: 1326 bp
ATGGCGGAAGCGAAGGAGGAGAATAGGGAGAAAAACGAAGAAGAAGAGAGCGTAAAGCTTTTCGTCGGACAAATTCCGAAACATATGTCGGAATCTCAACTCTTAACATTGTTTCAAGAGTTCGCTGTCGTTGACGAGGTCAATATCATCAAGGACAAGATTACACGCGCCTCTCGAGGATGTTGTTTTCTGCTATGTCCATCGAGAGAAGAAGCAGATAAGTTGGTCAATGCTTGCCATAACAAGAAGACATTGCCTGGGGCTAACAGTCTATTGCAAGTAAAGTATGCAGATGGCGAATTAGAAAGGCTAGAGCATAAGCTATTTGTTGGTATGCTTCCAAAGAATGTCTCTGAAGCTGAAGTTCAATCTTTATTCTCCAAGTACGGGACCATAAAGGATCTACAGATTCTAAGAGGTGCTCAACAAACGAGCAAAGGCTGTGCATTTCTGAAGTATGAGACAAAAGAACAAGCTGTTTCCGCCATGGAATCTATCAACGGAAAACATAAAATGGAGGGTTCAACTGTTCCTTTAGTTGTCAAATGGGCAGACACAGAACGAGAAAGACACACAAGAAGACTTCAAAAGGCTCAATCTCACATCGCCCGACTAGGGAACGGTGATCCAACAAATCCCTCATTGTTTGGAGCATTACCTATGGGTTATGTACCACCATATAATGGATATGGTTATCATCAGCCTCCTGGAACTTATGGTTACATGCTACCACCAATTCAGAACCAAGCTGCATTTTCCAATATGATTGCACAACCAAACCAAGGTAATAACAATGCATTGCAAGGAACATCGCCTGACTCTGTGCCGCCTCGTTTGGCCCGTAGAAACTTTCCTATGCCTCCTGGAAACTACATGGGATCTGGTTATCCTGCTATGCGAGGTCATCCTTTTCCATTTGCTTATCCCAGAGGAATTGTTAGTCCTCGCCCTCTAAGTAGCTCTCCTGGATCTATATCACCTGGCATGTCAACACCTTTAGGCATTGGTTTGAGTTCTGTGGTTCAAACCGAAGGTCCAGAAGGTGCAAATCTGTTTATCTATAACATACCTCGGGAGTTCGGGGATCAAGAACTCGCGGCTGCATTTCAATCTTTCGGTATTGTTCTGAGTGCCAAGGTTTTTGTAGACAAAGCCACTGGTGTAAGCAAATGTTTCGGTTTTGTTAGCTATGACTCACAAGCCGCGGCGCAGAACGCTATTGACATGATGAATGGTCGCCATTTAGGCGGTAAGAAATTGAAAGTCCAGCTTAAGAGAGACAGCAACAATGGCCAACCGAGTAGTAATCCTTCCTTAATCTCCTGA

Protein Analysis

441

Amino Acids

48.2

Weight (kDa)

8.93

Isoelectric Point (pI)

48.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 20 - 83 8.3e-11 RNA recognition motif
RRM_1 PF00076 108 - 175 3.5e-16 RNA recognition motif
RRM_1 PF00076 351 - 421 4.1e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 683
AccI GTMKAC 1 cut(s) 1146
AccII CGCG 3 cut(s) 168, 1097, 1205
AciI CCGC 7 cut(s) 5, 483, 827, 1097, 1203, 1205, 1248
AclWI GGATC 5 cut(s) 408, 620, 886, 976, 1092
AcoI YGGCCR 1 cut(s) 1291
AcsI RAATTY 1 cut(s) 72
AcuI CTGAAG 3 cut(s) 375, 381, 473
AfaI GTAC 2 cut(s) 386, 672
AfiI CCNNNNNNNGG 4 cut(s) 387, 615, 683, 782
AflII CTTAAG 1 cut(s) 1271
AgsI TTSAA 7 cut(s) 116, 368, 525, 587, 1025, 1109, 1261
AjnI CCWGG 5 cut(s) 256, 706, 862, 964, 979
AluBI AGCT 8 cut(s) 58, 322, 359, 476, 749, 960, 1188, 1270
AluI AGCT 8 cut(s) 58, 322, 359, 476, 749, 960, 1188, 1270
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 3 cut(s) 355, 455, 1272
AlwI GGATC 5 cut(s) 408, 620, 886, 976, 1092
Ama87I CYCGRG 2 cut(s) 174, 1071
AoxI GGCC 2 cut(s) 837, 1291
ApeKI GCWGC 2 cut(s) 749, 1100
ApoI RAATTY 1 cut(s) 72
ArsI GACNNNNNNTTYG 4 cut(s) 71, 103, 1018, 1050
AspLEI GCGC 2 cut(s) 170, 1210
AspS9I GGNCC 3 cut(s) 390, 838, 1034
AsuHPI GGTGA 2 cut(s) 635, 969
AvaI CYCGRG 2 cut(s) 174, 1071
AvaII GGWCC 2 cut(s) 390, 1034
BalI TGGCCA 1 cut(s) 1293
BarI GAAGNNNNNNTAC 2 cut(s) 1294, 1326
BbsI GAAGAC 2 cut(s) 254, 586
Bbv12I GWGCWC 1 cut(s) 424
BbvI GCAGC 2 cut(s) 736, 1087
BccI CCATC 2 cut(s) 208, 287
BcgI CGANNNNNNTGC 2 cut(s) 1156, 1190
BciT130I CCWGG 5 cut(s) 258, 708, 864, 966, 981
BcoDI GTCTC 3 cut(s) 355, 455, 1272
BfaI CTAG 2 cut(s) 311, 614
BfmI CTRYAG 1 cut(s) 404
BfrI CTTAAG 1 cut(s) 1271
BglI GCCNNNNNGGC 1 cut(s) 1245
BisI GCNGC 6 cut(s) 750, 827, 1098, 1101, 1203, 1206
BlsI GCNGC 6 cut(s) 751, 828, 1099, 1102, 1204, 1207
Bme1390I CCNGG 5 cut(s) 258, 708, 864, 966, 981
Bme18I GGWCC 2 cut(s) 390, 1034
BmeT110I CYCGRG 2 cut(s) 174, 1071
BmgT120I GGNCC 3 cut(s) 390, 838, 1034
BmiI GGNNCC 1 cut(s) 391
BmrFI CCNGG 5 cut(s) 258, 708, 864, 966, 981
BpiI GAAGAC 2 cut(s) 254, 586
BsaBI GATNNNNATC 1 cut(s) 973
BsaJI CCNNGG 6 cut(s) 257, 486, 781, 1070, 1134, 1203
Bsc4I CCNNNNNNNGG 4 cut(s) 387, 615, 683, 782
Bse1I ACTGG 1 cut(s) 1162
Bse3DI GCAATG 2 cut(s) 251, 797
Bse8I GATNNNNATC 1 cut(s) 973
BseBI CCWGG 5 cut(s) 258, 708, 864, 966, 981
BseDI CCNNGG 6 cut(s) 257, 486, 781, 1070, 1134, 1203
BseGI GGATG 2 cut(s) 185, 904
BseJI GATNNNNATC 1 cut(s) 973
BseLI CCNNNNNNNGG 4 cut(s) 387, 615, 683, 782
BseMI GCAATG 2 cut(s) 251, 797
BseMII CTCAG 1 cut(s) 1118
BseNI ACTGG 1 cut(s) 1162
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 736, 1087
Bsh1236I CGCG 3 cut(s) 168, 1097, 1205
BshFI GGCC 2 cut(s) 839, 1293
BsiHKAI GWGCWC 1 cut(s) 424
BsiHKCI CYCGRG 2 cut(s) 174, 1071
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 4 cut(s) 387, 615, 683, 782
BsmAI GTCTC 3 cut(s) 355, 455, 1272
BsmFI GGGAC 1 cut(s) 403
BsnI GGCC 2 cut(s) 839, 1293
BsoBI CYCGRG 2 cut(s) 174, 1071
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 5 cut(s) 400, 625, 878, 968, 1084
Bsp19I CCATGG 1 cut(s) 486
BspACI CCGC 7 cut(s) 5, 483, 827, 1097, 1203, 1205, 1248
BspANI GGCC 2 cut(s) 839, 1293
BspCNI CTCAG 1 cut(s) 1119
BspFNI CGCG 3 cut(s) 168, 1097, 1205
BspLI GGNNCC 1 cut(s) 391
BspPI GGATC 5 cut(s) 408, 620, 886, 976, 1092
BspTI CTTAAG 1 cut(s) 1271
BsrDI GCAATG 2 cut(s) 251, 797
BsrI ACTGG 1 cut(s) 1162
BssECI CCNNGG 6 cut(s) 257, 486, 781, 1070, 1134, 1203
BssMI GATC 5 cut(s) 400, 625, 878, 968, 1084
BssT1I CCWWGG 3 cut(s) 486, 781, 1134
Bst2UI CCWGG 5 cut(s) 258, 708, 864, 966, 981
Bst4CI ACNGT 3 cut(s) 269, 529, 623
Bst6I CTCTTC 1 cut(s) 39
BstAFI CTTAAG 1 cut(s) 1271
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 3 cut(s) 413, 953, 1127
BstDSI CCRYGG 2 cut(s) 486, 1203
BstF5I GGATG 2 cut(s) 185, 904
BstFNI CGCG 3 cut(s) 168, 1097, 1205
BstHHI GCGC 2 cut(s) 170, 1210
BstKTI GATC 5 cut(s) 403, 628, 881, 971, 1087
BstMAI GTCTC 3 cut(s) 355, 455, 1272
BstMBI GATC 5 cut(s) 400, 625, 878, 968, 1084
BstMWI GCNNNNNNNGC 4 cut(s) 482, 1214, 1245, 1290
BstNI CCWGG 5 cut(s) 258, 708, 864, 966, 981
BstNSI RCATGY 2 cut(s) 727, 988
BstSCI CCNGG 5 cut(s) 256, 706, 862, 964, 979
BstSFI CTRYAG 1 cut(s) 404
BstUI CGCG 3 cut(s) 168, 1097, 1205
BstV1I GCAGC 2 cut(s) 736, 1087
BstV2I GAAGAC 2 cut(s) 254, 586
BstX2I RGATCY 3 cut(s) 400, 878, 968
BstYI RGATCY 3 cut(s) 400, 878, 968
BsuRI GGCC 2 cut(s) 839, 1293
BtgI CCRYGG 2 cut(s) 486, 1203
BtgZI GCGATG 2 cut(s) 589, 795
BtsCI GGATG 2 cut(s) 185, 904
BtsIMutI CAGTG 1 cut(s) 1155
Cac8I GCNNGC 1 cut(s) 235
CfoI GCGC 2 cut(s) 170, 1210
Cfr13I GGNCC 3 cut(s) 390, 838, 1034
Cfr42I CCGCGG 1 cut(s) 1206
Csp6I GTAC 2 cut(s) 385, 671
CviAII CATG 5 cut(s) 487, 724, 874, 985, 1225
CviQI GTAC 2 cut(s) 385, 671
DdeI CTNAG 3 cut(s) 413, 953, 1127
DpnI GATC 5 cut(s) 402, 627, 880, 970, 1086
DpnII GATC 5 cut(s) 400, 625, 878, 968, 1084
EaeI YGGCCR 1 cut(s) 1291
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
EciI GGCGGA 2 cut(s) 20, 472
Eco130I CCWWGG 3 cut(s) 486, 781, 1134
Eco47I GGWCC 2 cut(s) 390, 1034
Eco57I CTGAAG 3 cut(s) 375, 381, 473
Eco88I CYCGRG 2 cut(s) 174, 1071
EcoRII CCWGG 5 cut(s) 256, 706, 862, 964, 979
EcoT14I CCWWGG 3 cut(s) 486, 781, 1134
EcoT22I ATGCAT 1 cut(s) 799
ErhI CCWWGG 3 cut(s) 486, 781, 1134
FaeI CATG 5 cut(s) 490, 727, 877, 988, 1228
FalI AAGNNNNNCTT 2 cut(s) 1254, 1286
FaqI GGGAC 1 cut(s) 403
FatI CATG 5 cut(s) 486, 723, 873, 984, 1224
FauNDI CATATG 1 cut(s) 84
FblI GTMKAC 1 cut(s) 1146
Fnu4HI GCNGC 6 cut(s) 750, 827, 1098, 1101, 1203, 1206
FokI GGATG 2 cut(s) 192, 891
Fsp4HI GCNGC 6 cut(s) 750, 827, 1098, 1101, 1203, 1206
FspBI CTAG 2 cut(s) 311, 614
GlaI GCGC 2 cut(s) 169, 1209
GluI GCNGC 6 cut(s) 750, 827, 1098, 1101, 1203, 1206
HaeIII GGCC 2 cut(s) 839, 1293
HhaI GCGC 2 cut(s) 170, 1210
Hin1II CATG 5 cut(s) 490, 727, 877, 988, 1228
Hin6I GCGC 2 cut(s) 168, 1208
HinP1I GCGC 2 cut(s) 168, 1208
HincII GTYRAC 2 cut(s) 133, 990
HindII GTYRAC 2 cut(s) 133, 990
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 5 cut(s) 92, 409, 491, 818, 1193
HphI GGTGA 2 cut(s) 635, 969
Hpy166II GTNNAC 3 cut(s) 133, 990, 1147
Hpy188I TCNGA 7 cut(s) 68, 78, 91, 355, 453, 741, 1128
Hpy188III TCNNGA 7 cut(s) 116, 174, 204, 1037, 1073, 1088, 1323
Hpy8I GTNNAC 3 cut(s) 133, 990, 1147
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 4 cut(s) 7, 1025, 1034, 1320
HpyCH4III ACNGT 3 cut(s) 269, 529, 623
HpyCH4V TGCA 9 cut(s) 277, 290, 446, 752, 770, 797, 802, 1046, 1103
HpyF10VI GCNNNNNNNGC 4 cut(s) 482, 1214, 1245, 1290
HpyF3I CTNAG 3 cut(s) 413, 953, 1127
Hsp92II CATG 5 cut(s) 490, 727, 877, 988, 1228
HspAI GCGC 2 cut(s) 168, 1208
KspI CCGCGG 1 cut(s) 1206
Kzo9I GATC 5 cut(s) 400, 625, 878, 968, 1084
LmnI GCTCC 1 cut(s) 650
Lsp1109I GCAGC 2 cut(s) 736, 1087
MaeI CTAG 2 cut(s) 311, 614
MaeIII GTNAC 1 cut(s) 719
MalI GATC 5 cut(s) 402, 627, 880, 970, 1086
MboI GATC 5 cut(s) 400, 625, 878, 968, 1084
MboII GAAGA 6 cut(s) 50, 53, 56, 221, 259, 591
MflI RGATCY 3 cut(s) 400, 878, 968
MhlI GDGCHC 1 cut(s) 424
MlsI TGGCCA 1 cut(s) 1293
MluCI AATT 5 cut(s) 72, 299, 735, 933, 1256
MluNI TGGCCA 1 cut(s) 1293
MlyI GAGTC 2 cut(s) 812, 1187
MmeI TCCRAC 3 cut(s) 46, 69, 653
Mox20I TGGCCA 1 cut(s) 1293
Mph1103I ATGCAT 1 cut(s) 799
MscI TGGCCA 1 cut(s) 1293
MseI TTAA 3 cut(s) 104, 1272, 1316
Msp20I TGGCCA 1 cut(s) 1293
MspA1I CMGCKG 1 cut(s) 1205
MspCI CTTAAG 1 cut(s) 1271
MspR9I CCNGG 5 cut(s) 258, 708, 864, 966, 981
MvaI CCWGG 5 cut(s) 258, 708, 864, 966, 981
MvnI CGCG 3 cut(s) 168, 1097, 1205
MwoI GCNNNNNNNGC 4 cut(s) 482, 1214, 1245, 1290
NcoI CCATGG 1 cut(s) 486
NdeI CATATG 1 cut(s) 84
NdeII GATC 5 cut(s) 400, 625, 878, 968, 1084
NlaIII CATG 5 cut(s) 490, 727, 877, 988, 1228
NlaIV GGNNCC 1 cut(s) 391
NsiI ATGCAT 1 cut(s) 799
NspI RCATGY 2 cut(s) 727, 988
PaeR7I CTCGAG 1 cut(s) 174
PcsI WCGNNNNNNNCGW 2 cut(s) 172, 838
PfeI GAWTC 3 cut(s) 92, 409, 491
PflFI GACNNNGTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 683
PfoI TCCNGGA 3 cut(s) 706, 862, 964
PkrI GCNGC 6 cut(s) 751, 828, 1099, 1102, 1204, 1207
PleI GAGTC 2 cut(s) 812, 1187
PpsI GAGTC 2 cut(s) 812, 1187
Psp6I CCWGG 5 cut(s) 256, 706, 862, 964, 979
PspGI CCWGG 5 cut(s) 256, 706, 862, 964, 979
PspN4I GGNNCC 1 cut(s) 391
PspPI GGNCC 3 cut(s) 390, 838, 1034
PsuI RGATCY 3 cut(s) 400, 878, 968
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 2 cut(s) 386, 672
RsaNI GTAC 2 cut(s) 385, 671
SacII CCGCGG 1 cut(s) 1206
SaqAI TTAA 3 cut(s) 104, 1272, 1316
SatI GCNGC 6 cut(s) 750, 827, 1098, 1101, 1203, 1206
Sau3AI GATC 5 cut(s) 400, 625, 878, 968, 1084
Sau96I GGNCC 3 cut(s) 390, 838, 1034
SchI GAGTC 2 cut(s) 812, 1187
ScrFI CCNGG 5 cut(s) 258, 708, 864, 966, 981
SduI GDGCHC 1 cut(s) 424
SfcI CTRYAG 1 cut(s) 404
Sfr274I CTCGAG 1 cut(s) 174
Sfr303I CCGCGG 1 cut(s) 1206
SgrBI CCGCGG 1 cut(s) 1206
SinI GGWCC 2 cut(s) 390, 1034
SlaI CTCGAG 1 cut(s) 174
SmlI CTYRAG 2 cut(s) 174, 1271
SmoI CTYRAG 2 cut(s) 174, 1271
Sse9I AATT 5 cut(s) 72, 299, 735, 933, 1256
SsiI CCGC 7 cut(s) 5, 483, 827, 1097, 1203, 1205, 1248
SspMI CTAG 2 cut(s) 311, 614
StyD4I CCNGG 5 cut(s) 256, 706, 862, 964, 979
StyI CCWWGG 3 cut(s) 486, 781, 1134
TaaI ACNGT 3 cut(s) 269, 529, 623
TaqI TCGA 2 cut(s) 175, 203
TasI AATT 5 cut(s) 72, 299, 735, 933, 1256
TauI GCSGC 4 cut(s) 829, 1100, 1205, 1208
TfiI GAWTC 3 cut(s) 92, 409, 491
Tru1I TTAA 3 cut(s) 104, 1272, 1316
Tru9I TTAA 3 cut(s) 104, 1272, 1316
TscAI CASTG 1 cut(s) 1162
TseI GCWGC 2 cut(s) 749, 1100
TspDTI ATGAA 1 cut(s) 1244
TspGWI ACGGA 1 cut(s) 516
TspRI CASTG 1 cut(s) 1162
Tth111I GACNNNGTC 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 683
Vha464I CTTAAG 1 cut(s) 1271
VpaK11BI GGWCC 2 cut(s) 390, 1034
XapI RAATTY 1 cut(s) 72
XceI RCATGY 2 cut(s) 727, 988
XhoI CTCGAG 1 cut(s) 174
XmiI GTMKAC 1 cut(s) 1146
XspI CTAG 2 cut(s) 311, 614
Zsp2I ATGCAT 1 cut(s) 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.