FvH4_2g24620

CUGBP Elav-like family member

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
20046639 .. 20050774
4136 bp
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UTR
Exon/CDS
Intron
FvH4_2g24620.t2

Sequence Viewer

Length: 1311 bp
ATGGCGGAGGTGAGGAAGGAGAGGCGGCCGCCGAACAGCGAAGAGAGCGTGAAGCTGTTCGTGGGGCAAGTCCCGAAGCACATGAACGAAGCTCAACTCCTCACAATGTTCGAAGAGTTCTCCCTCGTCGACGAGGTCAACATCATCAAGGACAAGACCACGCGCGCGTCTAGAGGGTGTTGCTTTGTGATATGTCCATCTAGAGAGGAAGCAGACAAGGCGGTCAATGCATGTCACAATAAGAAGACCTTGCCTGGGGCATCGAGTCCGTTGCAAGTGAAGTATGCTGATGGCGAGTTGGAAAGATTAGAACATAAGCTCTTTGTCGGTATGCTTCCTAAGAATGTCTCCGAAGTTGAAGTATCCGATCTTTTCTCTAAATACGGAACAGTAAAGGACCTACAGATATTAAGGGGTTCTCAGCAAACAAGCAAAGGCTGTGCGTTTTTAAAGTACGAAACGAAAGAACAAGCACTTGCTGCCCTGGAAGCCGTTAATGGAAAACACAAAATGGAGGGTTCTAGTGTTCCTTTGGTTGTCAAATGGGCAGACACAGAGAAGGAAAGGCTAGCTCGGAGAGCTCAAAAAGCTCATTCTCAGGGTGCTAATGTGCCGAATTCTGATTCACAACCTCCGTCTTTATTTGGAGCCTTACCTATGGGTTATGTTCCCTCATATAATGGTTATAGTTATCAGGCTCCTGGAACTTATGGCCTCATGCAATACCGCTTGCCAGCACTGCAAAATCAACCAGGTTTCCATAATATGGTACCCCCTTTAAATCAAGGAAATGCTTTACACCGAATTGCACCCGACCTTCCTCCCAATATTGCCCCTAGAAATTTCGCTATGCGTCCAAGCTACCTGGGTTCTGGTTATCCTGGGGTTCCAGGTCTTCAGCATCCGATGGTATATGCGGGAGGAATGATGAGTCACCGGCCATTGAGCGCCTCACCTGGCTCGTTGTCACCTTTAGTTATGAACAGTAACCCAGCCACATCCTTAGGCACCAGTAGAAGTTCCGGGGGTCAGGTTGAAGGTCCTCCTGGTGCCAATTTATTTATCTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTAATGCTTTTCAAGCATTTGGTAGGGTTTTGAGTGCCAAGGTTTTTGTTGATAAAGCAACCGGTGTCAGCAAATGTTTTGGATTTGTAAGTTATGATTCACCGGAGGCTGCTCAATCTGCTATCACTGTTATGAATGGATACCAGTTAAGTGGTAAGAAATTAAAGGTTCAGCTTAAGAGAGATAACAAGCAGAACAAATCCTATTAA

Protein Analysis

437

Amino Acids

47.57

Weight (kDa)

9.2

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 19 - 82 2.3e-13 RNA recognition motif
RRM_1 PF00076 107 - 170 3.9e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 221
Acc65I GGTACC 1 cut(s) 769
AccB1I GGYRCC 3 cut(s) 769, 1007, 1049
AccB7I CCANNNNNTGG 1 cut(s) 766
AccI GTMKAC 1 cut(s) 129
AccII CGCG 3 cut(s) 163, 165, 167
AciI CCGC 6 cut(s) 5, 25, 29, 221, 727, 917
AcoI YGGCCR 2 cut(s) 26, 938
AcsI RAATTY 3 cut(s) 616, 841, 1082
AcuI CTGAAG 1 cut(s) 881
AfaI GTAC 2 cut(s) 455, 771
AfiI CCNNNNNNNGG 2 cut(s) 255, 766
AflII CTTAAG 1 cut(s) 1277
AgeI ACCGGT 1 cut(s) 1163
AgsI TTSAA 3 cut(s) 359, 1037, 1115
AjnI CCWGG 9 cut(s) 253, 483, 700, 751, 864, 880, 889, 955, 1045
AluBI AGCT 9 cut(s) 55, 92, 319, 572, 581, 590, 861, 1099, 1276
AluI AGCT 9 cut(s) 55, 92, 319, 572, 581, 590, 861, 1099, 1276
Alw21I GWGCWC 1 cut(s) 583
Alw26I GTCTC 1 cut(s) 352
AoxI GGCC 3 cut(s) 26, 712, 938
ApeKI GCWGC 2 cut(s) 479, 1211
ApoI RAATTY 3 cut(s) 616, 841, 1082
AsiGI ACCGGT 1 cut(s) 1163
Asp700I GAANNNNTTC 1 cut(s) 56
Asp718I GGTACC 1 cut(s) 769
AspLEI GCGC 3 cut(s) 165, 167, 950
AspS9I GGNCC 2 cut(s) 397, 1040
AsuC2I CCSGG 1 cut(s) 1024
AsuHPI GGTGA 5 cut(s) 22, 926, 945, 960, 1194
AsuII TTCGAA 1 cut(s) 111
AsuNHI GCTAGC 1 cut(s) 568
AvaII GGWCC 2 cut(s) 397, 1040
AxyI CCTNAGG 1 cut(s) 1003
BanI GGYRCC 3 cut(s) 769, 1007, 1049
BanII GRGCYC 1 cut(s) 583
BbsI GAAGAC 2 cut(s) 251, 887
Bbv12I GWGCWC 1 cut(s) 583
BbvI GCAGC 2 cut(s) 466, 1198
BccI CCATC 3 cut(s) 205, 284, 901
BceAI ACGGC 1 cut(s) 476
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BciT130I CCWGG 9 cut(s) 255, 485, 702, 753, 866, 882, 891, 957, 1047
BciVI GTATCC 2 cut(s) 373, 1235
BcnI CCSGG 1 cut(s) 1024
BcoDI GTCTC 1 cut(s) 352
BfaI CTAG 5 cut(s) 171, 201, 522, 569, 837
BfmI CTRYAG 1 cut(s) 401
BfoI RGCGCY 1 cut(s) 951
BfrI CTTAAG 1 cut(s) 1277
BfuI GTATCC 2 cut(s) 373, 1235
BisI GCNGC 4 cut(s) 26, 29, 480, 1212
BlsI GCNGC 4 cut(s) 27, 30, 481, 1213
Bme18I GGWCC 2 cut(s) 397, 1040
BmgT120I GGNCC 2 cut(s) 397, 1040
BmiI GGNNCC 6 cut(s) 649, 699, 771, 888, 1009, 1051
BmsI GCATC 2 cut(s) 269, 910
BmtI GCTAGC 1 cut(s) 572
BpiI GAAGAC 2 cut(s) 251, 887
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 1062
BpuMI CCSGG 1 cut(s) 1024
BsaJI CCNNGG 6 cut(s) 254, 483, 865, 881, 1023, 1140
BsaWI WCCGGW 2 cut(s) 1163, 1204
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 766
Bse118I RCCGGY 2 cut(s) 936, 1163
Bse1I ACTGG 2 cut(s) 1011, 1246
Bse21I CCTNAGG 1 cut(s) 1003
BseBI CCWGG 9 cut(s) 255, 485, 702, 753, 866, 882, 891, 957, 1047
BseDI CCNNGG 6 cut(s) 254, 483, 865, 881, 1023, 1140
BseGI GGATG 2 cut(s) 901, 998
BseLI CCNNNNNNNGG 2 cut(s) 255, 766
BseMII CTCAG 2 cut(s) 434, 611
BseNI ACTGG 2 cut(s) 1011, 1246
BsePI GCGCGC 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 89
BseX3I CGGCCG 1 cut(s) 26
BseXI GCAGC 2 cut(s) 466, 1198
BseYI CCCAGC 1 cut(s) 991
Bsh1236I CGCG 3 cut(s) 163, 165, 167
Bsh1285I CGRYCG 1 cut(s) 29
BshFI GGCC 3 cut(s) 28, 714, 940
BshNI GGYRCC 3 cut(s) 769, 1007, 1049
BshTI ACCGGT 1 cut(s) 1163
BsiEI CGRYCG 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 583
BsiSI CCGG 4 cut(s) 937, 1023, 1164, 1205
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 255, 766
BsmAI GTCTC 1 cut(s) 352
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 3 cut(s) 28, 714, 940
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 583
Bsp143I GATC 2 cut(s) 367, 1090
BspACI CCGC 6 cut(s) 5, 25, 29, 221, 727, 917
BspANI GGCC 3 cut(s) 28, 714, 940
BspCNI CTCAG 2 cut(s) 433, 610
BspFNI CGCG 3 cut(s) 163, 165, 167
BspLI GGNNCC 6 cut(s) 649, 699, 771, 888, 1009, 1051
BspOI GCTAGC 1 cut(s) 572
BspT104I TTCGAA 1 cut(s) 111
BspT107I GGYRCC 3 cut(s) 769, 1007, 1049
BspTI CTTAAG 1 cut(s) 1277
BsrFI RCCGGY 2 cut(s) 936, 1163
BsrI ACTGG 2 cut(s) 1011, 1246
BssAI RCCGGY 2 cut(s) 936, 1163
BssECI CCNNGG 6 cut(s) 254, 483, 865, 881, 1023, 1140
BssHII GCGCGC 1 cut(s) 163
BssMI GATC 2 cut(s) 367, 1090
BssT1I CCWWGG 1 cut(s) 1140
Bst2UI CCWGG 9 cut(s) 255, 485, 702, 753, 866, 882, 891, 957, 1047
Bst4CI ACNGT 3 cut(s) 391, 986, 1231
Bst6I CTCTTC 2 cut(s) 36, 108
BstAFI CTTAAG 1 cut(s) 1277
BstAPI GCANNNNNTGC 1 cut(s) 479
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 5 cut(s) 165, 570, 731, 735, 1101
BstDEI CTNAG 4 cut(s) 339, 420, 597, 1003
BstF5I GGATG 2 cut(s) 901, 998
BstFNI CGCG 3 cut(s) 163, 165, 167
BstH2I RGCGCY 1 cut(s) 951
BstHHI GCGC 3 cut(s) 165, 167, 950
BstKTI GATC 2 cut(s) 370, 1093
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 2 cut(s) 367, 1090
BstMCI CGRYCG 1 cut(s) 29
BstNI CCWGG 9 cut(s) 255, 485, 702, 753, 866, 882, 891, 957, 1047
BstNSI RCATGY 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 401
BstUI CGCG 3 cut(s) 163, 165, 167
BstV1I GCAGC 2 cut(s) 466, 1198
BstV2I GAAGAC 2 cut(s) 251, 887
BstXI CCANNNNNNTGG 1 cut(s) 1253
BstZI CGGCCG 1 cut(s) 26
Bsu36I CCTNAGG 1 cut(s) 1003
BsuI GTATCC 2 cut(s) 373, 1235
BsuRI GGCC 3 cut(s) 28, 714, 940
BtsCI GGATG 2 cut(s) 901, 998
BtsI GCAGTG 1 cut(s) 737
BtsIMutI CAGTG 2 cut(s) 737, 1227
Cac8I GCNNGC 5 cut(s) 165, 570, 731, 735, 1101
CciNI GCGGCCGC 1 cut(s) 26
CfoI GCGC 3 cut(s) 165, 167, 950
Cfr10I RCCGGY 2 cut(s) 936, 1163
Cfr13I GGNCC 2 cut(s) 397, 1040
CseI GACGC 2 cut(s) 156, 842
CsiI ACCWGGT 1 cut(s) 751
Csp6I GTAC 2 cut(s) 454, 770
CspAI ACCGGT 1 cut(s) 1163
CviAII CATG 3 cut(s) 82, 231, 718
CviQI GTAC 2 cut(s) 454, 770
DdeI CTNAG 4 cut(s) 339, 420, 597, 1003
DpnI GATC 2 cut(s) 369, 1092
DpnII GATC 2 cut(s) 367, 1090
DraI TTTAAA 2 cut(s) 450, 780
DrdI GACNNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 221
EaeI YGGCCR 2 cut(s) 26, 938
EagI CGGCCG 1 cut(s) 26
Eam1104I CTCTTC 2 cut(s) 36, 108
EarI CTCTTC 2 cut(s) 36, 108
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 581
EclXI CGGCCG 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 1140
Eco24I GRGCYC 1 cut(s) 583
Eco47I GGWCC 2 cut(s) 397, 1040
Eco52I CGGCCG 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 581
Eco57I CTGAAG 1 cut(s) 881
Eco81I CCTNAGG 1 cut(s) 1003
EcoICRI GAGCTC 1 cut(s) 581
EcoO109I RGGNCCY 2 cut(s) 397, 1040
EcoRI GAATTC 1 cut(s) 616
EcoRII CCWGG 9 cut(s) 253, 483, 700, 751, 864, 880, 889, 955, 1045
EcoT14I CCWWGG 1 cut(s) 1140
EcoT22I ATGCAT 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 583
ErhI CCWWGG 1 cut(s) 1140
FaeI CATG 3 cut(s) 85, 234, 721
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 1 cut(s) 56
FatI CATG 3 cut(s) 81, 230, 717
FauI CCCGC 1 cut(s) 910
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 4 cut(s) 26, 29, 480, 1212
FokI GGATG 2 cut(s) 888, 985
FriOI GRGCYC 1 cut(s) 583
Fsp4HI GCNGC 4 cut(s) 26, 29, 480, 1212
FspBI CTAG 5 cut(s) 171, 201, 522, 569, 837
GlaI GCGC 3 cut(s) 164, 166, 949
GluI GCNGC 4 cut(s) 26, 29, 480, 1212
GsaI CCCAGC 1 cut(s) 995
HaeII RGCGCY 1 cut(s) 951
HaeIII GGCC 3 cut(s) 28, 714, 940
HapII CCGG 4 cut(s) 937, 1023, 1164, 1205
HgaI GACGC 2 cut(s) 156, 842
HhaI GCGC 3 cut(s) 165, 167, 950
Hin1II CATG 3 cut(s) 85, 234, 721
Hin6I GCGC 3 cut(s) 163, 165, 948
HinP1I GCGC 3 cut(s) 163, 165, 948
HincII GTYRAC 2 cut(s) 130, 139
HindII GTYRAC 2 cut(s) 130, 139
HinfI GANTC 4 cut(s) 265, 623, 931, 1199
HpaII CCGG 4 cut(s) 937, 1023, 1164, 1205
HphI GGTGA 5 cut(s) 22, 926, 945, 960, 1194
Hpy166II GTNNAC 2 cut(s) 130, 139
Hpy188I TCNGA 5 cut(s) 352, 367, 576, 622, 906
Hpy188III TCNNGA 5 cut(s) 73, 171, 201, 1079, 1094
Hpy8I GTNNAC 2 cut(s) 130, 139
Hpy99I CGWCG 2 cut(s) 131, 134
HpyAV CCTTC 4 cut(s) 10, 553, 827, 1031
HpyCH4III ACNGT 3 cut(s) 391, 986, 1231
HpyCH4V TGCA 5 cut(s) 230, 274, 721, 742, 809
HpyF3I CTNAG 4 cut(s) 339, 420, 597, 1003
Hsp92II CATG 3 cut(s) 85, 234, 721
HspAI GCGC 3 cut(s) 163, 165, 948
KpnI GGTACC 1 cut(s) 773
Kzo9I GATC 2 cut(s) 367, 1090
LmnI GCTCC 2 cut(s) 647, 703
Lsp1109I GCAGC 2 cut(s) 466, 1198
LweI GCATC 2 cut(s) 269, 910
MabI ACCWGGT 1 cut(s) 751
MaeI CTAG 5 cut(s) 171, 201, 522, 569, 837
MaeIII GTNAC 4 cut(s) 233, 932, 966, 986
MalI GATC 2 cut(s) 369, 1092
MauBI CGCGCGCG 1 cut(s) 163
MboI GATC 2 cut(s) 367, 1090
MboII GAAGA 4 cut(s) 53, 125, 256, 887
MhlI GDGCHC 1 cut(s) 583
MluCI AATT 6 cut(s) 616, 804, 841, 1054, 1082, 1262
MlyI GAGTC 2 cut(s) 274, 940
MmeI TCCRAC 1 cut(s) 279
Mph1103I ATGCAT 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 8 cut(s) 410, 449, 495, 779, 1250, 1265, 1278, 1309
MslI CAYNNNNRTG 1 cut(s) 1232
MspCI CTTAAG 1 cut(s) 1277
MspI CCGG 4 cut(s) 937, 1023, 1164, 1205
MvaI CCWGG 9 cut(s) 255, 485, 702, 753, 866, 882, 891, 957, 1047
MvnI CGCG 3 cut(s) 163, 165, 167
NciI CCSGG 1 cut(s) 1024
NdeII GATC 2 cut(s) 367, 1090
NheI GCTAGC 1 cut(s) 568
NlaIII CATG 3 cut(s) 85, 234, 721
NlaIV GGNNCC 6 cut(s) 649, 699, 771, 888, 1009, 1051
NmuCI GTSAC 3 cut(s) 233, 932, 966
NotI GCGGCCGC 1 cut(s) 26
NsiI ATGCAT 1 cut(s) 232
NspI RCATGY 1 cut(s) 234
NspV TTCGAA 1 cut(s) 111
PauI GCGCGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 2 cut(s) 623, 1199
PflFI GACNNNGTC 1 cut(s) 134
PflMI CCANNNNNTGG 1 cut(s) 766
PfoI TCCNGGA 1 cut(s) 700
PinAI ACCGGT 1 cut(s) 1163
PkrI GCNGC 4 cut(s) 27, 30, 481, 1213
PleI GAGTC 2 cut(s) 273, 939
PpsI GAGTC 2 cut(s) 273, 939
PpuMI RGGWCCY 2 cut(s) 397, 1040
Psp124BI GAGCTC 1 cut(s) 583
Psp5II RGGWCCY 2 cut(s) 397, 1040
Psp6I CCWGG 9 cut(s) 253, 483, 700, 751, 864, 880, 889, 955, 1045
PspFI CCCAGC 1 cut(s) 991
PspGI CCWGG 9 cut(s) 253, 483, 700, 751, 864, 880, 889, 955, 1045
PspN4I GGNNCC 6 cut(s) 649, 699, 771, 888, 1009, 1051
PspPI GGNCC 2 cut(s) 397, 1040
PspPPI RGGWCCY 2 cut(s) 397, 1040
PsyI GACNNNGTC 1 cut(s) 134
PteI GCGCGC 1 cut(s) 163
RsaI GTAC 2 cut(s) 455, 771
RsaNI GTAC 2 cut(s) 454, 770
RseI CAYNNNNRTG 1 cut(s) 1232
SacI GAGCTC 1 cut(s) 583
SalI GTCGAC 1 cut(s) 128
SaqAI TTAA 8 cut(s) 410, 449, 495, 779, 1250, 1265, 1278, 1309
SatI GCNGC 4 cut(s) 26, 29, 480, 1212
Sau3AI GATC 2 cut(s) 367, 1090
Sau96I GGNCC 2 cut(s) 397, 1040
SchI GAGTC 2 cut(s) 274, 940
SduI GDGCHC 1 cut(s) 583
SexAI ACCWGGT 1 cut(s) 751
SfaNI GCATC 2 cut(s) 269, 910
SfcI CTRYAG 1 cut(s) 401
SfuI TTCGAA 1 cut(s) 111
SgrDI CGTCGACG 1 cut(s) 128
SinI GGWCC 2 cut(s) 397, 1040
SmiMI CAYNNNNRTG 1 cut(s) 1232
SmlI CTYRAG 2 cut(s) 1077, 1277
SmoI CTYRAG 2 cut(s) 1077, 1277
Sse9I AATT 6 cut(s) 616, 804, 841, 1054, 1082, 1262
SsiI CCGC 6 cut(s) 5, 25, 29, 221, 727, 917
SspI AATATT 1 cut(s) 829
SspMI CTAG 5 cut(s) 171, 201, 522, 569, 837
SstI GAGCTC 1 cut(s) 583
StyI CCWWGG 1 cut(s) 1140
TaaI ACNGT 3 cut(s) 391, 986, 1231
TaqI TCGA 3 cut(s) 111, 129, 263
TasI AATT 6 cut(s) 616, 804, 841, 1054, 1082, 1262
TauI GCSGC 2 cut(s) 28, 31
TfiI GAWTC 2 cut(s) 623, 1199
Tru1I TTAA 8 cut(s) 410, 449, 495, 779, 1250, 1265, 1278, 1309
Tru9I TTAA 8 cut(s) 410, 449, 495, 779, 1250, 1265, 1278, 1309
TscAI CASTG 2 cut(s) 744, 1234
TseFI GTSAC 3 cut(s) 233, 932, 966
TseI GCWGC 2 cut(s) 479, 1211
Tsp45I GTSAC 3 cut(s) 233, 932, 966
TspDTI ATGAA 3 cut(s) 98, 995, 1250
TspGWI ACGGA 3 cut(s) 258, 399, 624
TspRI CASTG 2 cut(s) 744, 1234
Tth111I GACNNNGTC 1 cut(s) 134
Van91I CCANNNNNTGG 1 cut(s) 766
Vha464I CTTAAG 1 cut(s) 1277
VpaK11BI GGWCC 2 cut(s) 397, 1040
XapI RAATTY 3 cut(s) 616, 841, 1082
XbaI TCTAGA 2 cut(s) 170, 200
XceI RCATGY 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 5 cut(s) 171, 201, 522, 569, 837
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.