Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006087

Physical Location & Seq

Genomic Coordinates Reverse (-)

54364212 .. 54368548

Gene Structure 4337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG340100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCTTCCAAAGAATGTTTCCGAAGTTGACGTATCCGATCTTTTCTCTAAATACGGAACAGTAAAGGACCTACAGATATTAAGGGGTTCTCAGCAAACGAGCAAAGGCTGTGCATTTTTAAAGTATGAGACAAAAGAACAAGCACTTGCTGCCCTGGAAGCCATTAATGGAAAACACAAAATGGAGGGTTCAAGTGTTCCTTTGGTTGTCAAATGGGCAGACACAGAAAAGGAAAGGCTAGCTCGGAGAGCCCAAAAAGCTCATTCTCAGGCTGCTAATGTGCCAAATTCTGATTCACAACCTCCATCTTTATTTGGAGCCTTGCCTATGGGTTACGTTCCCTCATATAATGGGTATGGTTATCAGGCTCCTGGAACATATGGCCTTATGCCATACCGCCTGCCAGCACTGCAAAATCAACCAGGTTTCCATAATATGATACCCCCTGTAAATCAAGGAAATGCTTTACATCGAATTACACCCGACCTTCCTCCCAATATTGCCCCTAGAAATTTTGCTATGCGTCCAAGTTACCTGGGTTCTGGTTATGCTGCGGTTCCAGGTCTTCAGCATCCGATGGTATATCCGGGAGGAATGGTGAGTCACCGGCCATTGAGCGCCTCACCTGGTTCATTGTCGCCTCTAGTTGTGAACAGTAACCCAGCCACATCCTTAGGCACCAGTAGAAGTTCCGGGGGTCAGGTTGAAGGTCCTCCTGGTGCTAATTTATTTATCTACCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTAATGCTTTTCAAGCATTTGGTAGGGTTTTGAGTGCCAAGGTTTTTGTTGATAAAGCAACCGGTGTCAGCAAATGTTTTGGATTTGTAAGTTATGATTCACCAGAGGCTGCTCAATCTGCCATCACTGTTATGAATGGATACCAATTAAGTGGTAAGAAATTAAAGGTTCAGCTCAAGAGAGATAACAAGCAGAACAAACCCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009626 GO:0009628 GO:0009648 GO:0009791 GO:0009892 GO:0009966 GO:0009967 GO:0009987 GO:0010228 GO:0010468 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0012501 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0023051 GO:0023056 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0034641 GO:0034655 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048573 GO:0048580 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080151 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:2000026 GO:2000028 GO:2000031 GO:2000241 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

326

Amino Acids

35.12

Weight (kDa)

9.5

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	2 - 60	1.9e-14	RNA recognition motif
RRM_1	PF00076	243 - 313	6.3e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03457 AT1G03457 AT1G03457 AT4G03110 AT4G03110 AT4G03110
fragaria_vesca	FvH4_2g24620 FvH4_2g24620 FvH4_2g24620
malus_domestica	MD03G1275000.v1.1 MD11G1297000.v1.1
prunus_persica	Prupe.8G251600_v2.0.a1 Prupe.8G251600_v2.0.a1 Prupe.8G251600_v2.0.a1 Prupe.8G251600_v2.0.a1
pyrus_communis	pycom03g21900 pycom11g26130
rosa_chinensis	RchiOBHm_Chr6g0292451
rosa_laevigata	RLG00000012023
rosa_multiflora	Rmu_sc0001354.1_g000022
rosa_roxburghii	Rroxscaffold_7G00175050
rosa_rugosa	Rorug06G0226700
rosa_samantha	Rh6AG340000 Rh6BG347300 Rh6CG354300 Rh6DG340100
rosa_wichuraiana	Rw6G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	677
AciI	CCGC	2 cut(s)	397, 554
AcoI	YGGCCR	1 cut(s)	608
AcsI	RAATTY	3 cut(s)	286, 511, 752
AcuI	CTGAAG	1 cut(s)	551
AgeI	ACCGGT	1 cut(s)	833
AgsI	TTSAA	3 cut(s)	192, 707, 785
AjnI	CCWGG	7 cut(s)	153, 370, 421, 534, 559, 625, 715
AjuI	GAANNNNNNNTTGG	3 cut(s)	33, 277, 309
AluBI	AGCT	4 cut(s)	242, 260, 769, 946
AluI	AGCT	4 cut(s)	242, 260, 769, 946
Alw26I	GTCTC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	881
AoxI	GGCC	2 cut(s)	382, 608
ApeKI	GCWGC	4 cut(s)	149, 272, 551, 881
ApoI	RAATTY	3 cut(s)	286, 511, 752
AseI	ATTAAT	1 cut(s)	165
AsiGI	ACCGGT	1 cut(s)	833
AspLEI	GCGC	1 cut(s)	620
AspS9I	GGNCC	2 cut(s)	67, 710
AsuC2I	CCSGG	2 cut(s)	588, 694
AsuHPI	GGTGA	4 cut(s)	596, 610, 615, 864
AsuNHI	GCTAGC	1 cut(s)	238
AvaII	GGWCC	2 cut(s)	67, 710
AxyI	CCTNAGG	1 cut(s)	673
BanI	GGYRCC	1 cut(s)	677
BanII	GRGCYC	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	557
BbvI	GCAGC	4 cut(s)	136, 259, 538, 868
BccI	CCATC	3 cut(s)	313, 571, 902
BciT130I	CCWGG	7 cut(s)	155, 372, 423, 536, 561, 627, 717
BciVI	GTATCC	2 cut(s)	43, 905
BcnI	CCSGG	2 cut(s)	588, 694
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	3 cut(s)	239, 507, 644
BfmI	CTRYAG	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	621
BfuI	GTATCC	2 cut(s)	43, 905
BisI	GCNGC	4 cut(s)	150, 273, 552, 882
BlsI	GCNGC	4 cut(s)	151, 274, 553, 883
Bme1390I	CCNGG	9 cut(s)	155, 372, 423, 536, 561, 588, 627, 694, 717
Bme18I	GGWCC	2 cut(s)	67, 710
BmgT120I	GGNCC	2 cut(s)	67, 710
BmiI	GGNNCC	4 cut(s)	319, 369, 558, 679
BmrFI	CCNGG	9 cut(s)	155, 372, 423, 536, 561, 588, 627, 694, 717
BmsI	GCATC	1 cut(s)	580
BmtI	GCTAGC	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	557
BpuEI	CTTGAG	2 cut(s)	732, 932
BpuMI	CCSGG	2 cut(s)	588, 694
BsaJI	CCNNGG	4 cut(s)	153, 535, 693, 810
BsaWI	WCCGGW	1 cut(s)	833
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bse118I	RCCGGY	2 cut(s)	606, 833
Bse1I	ACTGG	1 cut(s)	681
Bse21I	CCTNAGG	1 cut(s)	673
BseBI	CCWGG	7 cut(s)	155, 372, 423, 536, 561, 627, 717
BseDI	CCNNGG	4 cut(s)	153, 535, 693, 810
BseGI	GGATG	2 cut(s)	571, 668
BseMII	CTCAG	2 cut(s)	104, 281
BseNI	ACTGG	1 cut(s)	681
BseXI	GCAGC	4 cut(s)	136, 259, 538, 868
BseYI	CCCAGC	1 cut(s)	661
BshFI	GGCC	2 cut(s)	384, 610
BshNI	GGYRCC	1 cut(s)	677
BshTI	ACCGGT	1 cut(s)	833
BsiSI	CCGG	4 cut(s)	587, 607, 693, 834
BsmAI	GTCTC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	384, 610
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	37, 760
BspACI	CCGC	2 cut(s)	397, 554
BspANI	GGCC	2 cut(s)	384, 610
BspCNI	CTCAG	2 cut(s)	103, 280
BspLI	GGNNCC	4 cut(s)	319, 369, 558, 679
BspOI	GCTAGC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	677
BsrFI	RCCGGY	2 cut(s)	606, 833
BsrI	ACTGG	1 cut(s)	681
BssAI	RCCGGY	2 cut(s)	606, 833
BssECI	CCNNGG	4 cut(s)	153, 535, 693, 810
BssMI	GATC	2 cut(s)	37, 760
BssT1I	CCWWGG	1 cut(s)	810
Bst2UI	CCWGG	7 cut(s)	155, 372, 423, 536, 561, 627, 717
Bst4CI	ACNGT	3 cut(s)	61, 656, 901
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	4 cut(s)	240, 401, 405, 771
BstDEI	CTNAG	3 cut(s)	90, 267, 673
BstF5I	GGATG	2 cut(s)	571, 668
BstH2I	RGCGCY	1 cut(s)	621
BstHHI	GCGC	1 cut(s)	620
BstKTI	GATC	2 cut(s)	40, 763
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	2 cut(s)	37, 760
BstMWI	GCNNNNNNNGC	7 cut(s)	149, 158, 248, 257, 409, 785, 890
BstNI	CCWGG	7 cut(s)	155, 372, 423, 536, 561, 627, 717
BstSCI	CCNGG	9 cut(s)	153, 370, 421, 534, 559, 586, 625, 692, 715
BstSFI	CTRYAG	1 cut(s)	71
BstV1I	GCAGC	4 cut(s)	136, 259, 538, 868
BstV2I	GAAGAC	1 cut(s)	557
BstXI	CCANNNNNNTGG	1 cut(s)	923
Bsu36I	CCTNAGG	1 cut(s)	673
BsuI	GTATCC	2 cut(s)	43, 905
BsuRI	GGCC	2 cut(s)	384, 610
BtsCI	GGATG	2 cut(s)	571, 668
BtsI	GCAGTG	1 cut(s)	407
BtsIMutI	CAGTG	2 cut(s)	407, 897
Cac8I	GCNNGC	4 cut(s)	240, 401, 405, 771
CaiI	CAGNNNCTG	1 cut(s)	881
CfoI	GCGC	1 cut(s)	620
Cfr10I	RCCGGY	2 cut(s)	606, 833
Cfr13I	GGNCC	2 cut(s)	67, 710
CseI	GACGC	1 cut(s)	512
CsiI	ACCWGGT	2 cut(s)	421, 625
CspAI	ACCGGT	1 cut(s)	833
DdeI	CTNAG	3 cut(s)	90, 267, 673
DpnI	GATC	2 cut(s)	39, 762
DpnII	GATC	2 cut(s)	37, 760
DraI	TTTAAA	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	608
Eco130I	CCWWGG	1 cut(s)	810
Eco24I	GRGCYC	1 cut(s)	253
Eco47I	GGWCC	2 cut(s)	67, 710
Eco57I	CTGAAG	1 cut(s)	551
Eco81I	CCTNAGG	1 cut(s)	673
EcoO109I	RGGNCCY	2 cut(s)	67, 710
EcoRII	CCWGG	7 cut(s)	153, 370, 421, 534, 559, 625, 715
EcoT14I	CCWWGG	1 cut(s)	810
EcoT38I	GRGCYC	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	810
FalI	AAGNNNNNCTT	2 cut(s)	184, 216
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	4 cut(s)	150, 273, 552, 882
FokI	GGATG	2 cut(s)	558, 655
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	4 cut(s)	150, 273, 552, 882
FspBI	CTAG	3 cut(s)	239, 507, 644
GlaI	GCGC	1 cut(s)	619
GluI	GCNGC	4 cut(s)	150, 273, 552, 882
GsaI	CCCAGC	1 cut(s)	665
HaeII	RGCGCY	1 cut(s)	621
HaeIII	GGCC	2 cut(s)	384, 610
HapII	CCGG	4 cut(s)	587, 607, 693, 834
HgaI	GACGC	1 cut(s)	512
HhaI	GCGC	1 cut(s)	620
Hin6I	GCGC	1 cut(s)	618
HinP1I	GCGC	1 cut(s)	618
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	3 cut(s)	293, 601, 869
HpaII	CCGG	4 cut(s)	587, 607, 693, 834
HphI	GGTGA	4 cut(s)	596, 610, 615, 864
Hpy166II	GTNNAC	2 cut(s)	28, 652
Hpy188I	TCNGA	5 cut(s)	22, 37, 246, 292, 576
Hpy188III	TCNNGA	3 cut(s)	749, 764, 949
Hpy8I	GTNNAC	2 cut(s)	28, 652
HpyAV	CCTTC	2 cut(s)	497, 701
HpyCH4III	ACNGT	3 cut(s)	61, 656, 901
HpyCH4IV	ACGT	2 cut(s)	30, 336
HpyCH4V	TGCA	2 cut(s)	113, 412
HpyF10VI	GCNNNNNNNGC	7 cut(s)	149, 158, 248, 257, 409, 785, 890
HpyF3I	CTNAG	3 cut(s)	90, 267, 673
HpySE526I	ACGT	2 cut(s)	30, 336
HspAI	GCGC	1 cut(s)	618
Kzo9I	GATC	2 cut(s)	37, 760
LmnI	GCTCC	2 cut(s)	317, 373
Lsp1109I	GCAGC	4 cut(s)	136, 259, 538, 868
LweI	GCATC	1 cut(s)	580
MabI	ACCWGGT	2 cut(s)	421, 625
MaeI	CTAG	3 cut(s)	239, 507, 644
MaeII	ACGT	2 cut(s)	30, 336
MaeIII	GTNAC	4 cut(s)	332, 530, 602, 656
MalI	GATC	2 cut(s)	39, 762
MboI	GATC	2 cut(s)	37, 760
MboII	GAAGA	1 cut(s)	557
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	7 cut(s)	286, 474, 511, 724, 752, 917, 932
MlyI	GAGTC	1 cut(s)	610
MseI	TTAA	6 cut(s)	80, 119, 165, 920, 935, 979
MslI	CAYNNNNRTG	1 cut(s)	902
MspI	CCGG	4 cut(s)	587, 607, 693, 834
MspR9I	CCNGG	9 cut(s)	155, 372, 423, 536, 561, 588, 627, 694, 717
MvaI	CCWGG	7 cut(s)	155, 372, 423, 536, 561, 627, 717
MwoI	GCNNNNNNNGC	7 cut(s)	149, 158, 248, 257, 409, 785, 890
NciI	CCSGG	2 cut(s)	588, 694
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	2 cut(s)	37, 760
NheI	GCTAGC	1 cut(s)	238
NlaIV	GGNNCC	4 cut(s)	319, 369, 558, 679
NmuCI	GTSAC	1 cut(s)	602
PfeI	GAWTC	2 cut(s)	293, 869
PfoI	TCCNGGA	2 cut(s)	370, 586
PinAI	ACCGGT	1 cut(s)	833
PkrI	GCNGC	4 cut(s)	151, 274, 553, 883
PleI	GAGTC	1 cut(s)	609
PpsI	GAGTC	1 cut(s)	609
PpuMI	RGGWCCY	2 cut(s)	67, 710
PshBI	ATTAAT	1 cut(s)	165
Psp5II	RGGWCCY	2 cut(s)	67, 710
Psp6I	CCWGG	7 cut(s)	153, 370, 421, 534, 559, 625, 715
PspFI	CCCAGC	1 cut(s)	661
PspGI	CCWGG	7 cut(s)	153, 370, 421, 534, 559, 625, 715
PspN4I	GGNNCC	4 cut(s)	319, 369, 558, 679
PspPI	GGNCC	2 cut(s)	67, 710
PspPPI	RGGWCCY	2 cut(s)	67, 710
PstNI	CAGNNNCTG	1 cut(s)	881
RseI	CAYNNNNRTG	1 cut(s)	902
SaqAI	TTAA	6 cut(s)	80, 119, 165, 920, 935, 979
SatI	GCNGC	4 cut(s)	150, 273, 552, 882
Sau3AI	GATC	2 cut(s)	37, 760
Sau96I	GGNCC	2 cut(s)	67, 710
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	9 cut(s)	155, 372, 423, 536, 561, 588, 627, 694, 717
SduI	GDGCHC	1 cut(s)	253
SexAI	ACCWGGT	2 cut(s)	421, 625
SfaNI	GCATC	1 cut(s)	580
SfcI	CTRYAG	1 cut(s)	71
SinI	GGWCC	2 cut(s)	67, 710
SmiMI	CAYNNNNRTG	1 cut(s)	902
SmlI	CTYRAG	2 cut(s)	747, 947
SmoI	CTYRAG	2 cut(s)	747, 947
Sse9I	AATT	7 cut(s)	286, 474, 511, 724, 752, 917, 932
SsiI	CCGC	2 cut(s)	397, 554
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	3 cut(s)	239, 507, 644
StyD4I	CCNGG	9 cut(s)	153, 370, 421, 534, 559, 586, 625, 692, 715
StyI	CCWWGG	1 cut(s)	810
TaaI	ACNGT	3 cut(s)	61, 656, 901
TaiI	ACGT	2 cut(s)	33, 339
TaqI	TCGA	1 cut(s)	472
TasI	AATT	7 cut(s)	286, 474, 511, 724, 752, 917, 932
TfiI	GAWTC	2 cut(s)	293, 869
Tru1I	TTAA	6 cut(s)	80, 119, 165, 920, 935, 979
Tru9I	TTAA	6 cut(s)	80, 119, 165, 920, 935, 979
TscAI	CASTG	2 cut(s)	414, 904
TseFI	GTSAC	1 cut(s)	602
TseI	GCWGC	4 cut(s)	149, 272, 551, 881
Tsp45I	GTSAC	1 cut(s)	602
TspDTI	ATGAA	2 cut(s)	621, 920
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	2 cut(s)	414, 904
VpaK11BI	GGWCC	2 cut(s)	67, 710
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	3 cut(s)	286, 511, 752
XspI	CTAG	3 cut(s)	239, 507, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.