Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014968

Physical Location & Seq

Genomic Coordinates Reverse (-)

916772 .. 918064

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCTGCTTACACGTGTACTTCCCGTCCGCCGATTTCTATCCGGTCAGAGATGAGAATCGCTTCCTCGCCGACGGGTTCCTTCTCTACTCGACAGATGTTCTCTGTGTTGCCGGAATCGAGCGGATTGAGGACTCGCGTTTCTCTATCTTCACTCTCGAAGAATTCTAGGGTTTCCCGATTACGACGAGGCGTTATCTGTGAAGCTCAGGACACTGCTACAGGAATTCCAGTGGTCAACGATTCAACATGGGACTCTCTAGTTCTCAAGGCTGATGAGCCTGTGTTTGTCGACTTTTGGGCACCATGGTGTGGACCCTGCAAAATGATTGATCCCATTGTCAACGAACTCGCGCAAAAGTACGCCGGCCAGTTCAAGTTCTACAAACTTAACACTGATGAGTCTCCTGCAACCCCTGGCCAGTATGGTGTTAGAAGCATCCCAACTATCATGATCTTTGTCAATGGTGAGAAGAAGGATACAATCATCGGTGCTGTCTCTAAAGACACTTTAGCAACCAGCATCAACAAATTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010319 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0030312 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042592 GO:0042651 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071944 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

179

Amino Acids

19.66

Weight (kDa)

9.14

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	78 - 176	5.4e-32	Thioredoxin
Thioredoxin_2	PF13098	91 - 172	1.1e-07	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03680 AT4G03520
fragaria_vesca	FvH4_6g26180
prunus_persica	Prupe.3G137100_v2.0.a1 Prupe.3G137100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0126351
rosa_laevigata	RLG00000018902
rosa_multiflora	Rmu_sc0007825.1_g000009 Rmu_sc0022556.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117230
rosa_rugosa	Rorug02G0262800
rosa_samantha	Rh2AG319800 Rh2BG328100 Rh2CG307900 Rh2DG347700
rosa_wichuraiana	Rw2G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	301
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccBSI	CCGCTC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	2 cut(s)	138, 353
AciI	CCGC	2 cut(s)	29, 123
AclWI	GGATC	1 cut(s)	326
AcoI	YGGCCR	2 cut(s)	367, 418
AcsI	RAATTY	3 cut(s)	163, 225, 530
AcvI	CACGTG	1 cut(s)	15
AfaI	GTAC	2 cut(s)	19, 362
AfiI	CCNNNNNNNGG	1 cut(s)	311
AflIII	ACRYGT	2 cut(s)	12, 14
AgsI	TTSAA	2 cut(s)	246, 376
AjnI	CCWGG	1 cut(s)	415
AleI	CACNNNNGTG	1 cut(s)	307
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
Alw26I	GTCTC	2 cut(s)	408, 502
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	2 cut(s)	367, 418
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	3 cut(s)	163, 225, 530
Asp700I	GAANNNNTTC	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	314
BaeGI	GKGCMC	1 cut(s)	304
BalI	TGGCCA	1 cut(s)	420
BanI	GGYRCC	1 cut(s)	301
BbrPI	CACGTG	1 cut(s)	15
BciT130I	CCWGG	1 cut(s)	417
BciVI	GTATCC	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	408, 502
BfaI	CTAG	2 cut(s)	168, 260
BfmI	CTRYAG	1 cut(s)	219
BfuI	GTATCC	1 cut(s)	472
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	417
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	3 cut(s)	79, 303, 316
BmrFI	CCNGG	1 cut(s)	417
BmsI	GCATC	2 cut(s)	447, 531
Bpu10I	CCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	251
BsaAI	YACGTR	1 cut(s)	15
BsaBI	GATNNNNATC	2 cut(s)	38, 56
BsaJI	CCNNGG	2 cut(s)	305, 415
BsaWI	WCCGGW	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	3 cut(s)	230, 370, 421
Bse8I	GATNNNNATC	2 cut(s)	38, 56
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	2 cut(s)	305, 415
BseGI	GGATG	1 cut(s)	438
BseJI	GATNNNNATC	2 cut(s)	38, 56
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	3 cut(s)	230, 370, 421
BseSI	GKGCMC	1 cut(s)	304
Bsh1236I	CGCG	2 cut(s)	138, 353
BshFI	GGCC	2 cut(s)	369, 420
BshNI	GGYRCC	1 cut(s)	301
BsiSI	CCGG	3 cut(s)	43, 113, 366
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	2 cut(s)	408, 502
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	369, 420
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	331, 453
Bsp19I	CCATGG	1 cut(s)	305
BspACI	CCGC	2 cut(s)	29, 123
BspANI	GGCC	2 cut(s)	369, 420
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	2 cut(s)	138, 353
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	3 cut(s)	79, 303, 316
BspPI	GGATC	1 cut(s)	326
BspT107I	GGYRCC	1 cut(s)	301
BsrBI	CCGCTC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	3 cut(s)	230, 370, 421
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	305, 415
BssMI	GATC	2 cut(s)	331, 453
BssT1I	CCWWGG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	417
BstBAI	YACGTR	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	1 cut(s)	207
BstDSI	CCRYGG	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	438
BstFNI	CGCG	2 cut(s)	138, 353
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	2 cut(s)	334, 456
BstMAI	GTCTC	2 cut(s)	408, 502
BstMBI	GATC	2 cut(s)	331, 453
BstNI	CCWGG	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	415
BstSFI	CTRYAG	1 cut(s)	219
BstSLI	GKGCMC	1 cut(s)	304
BstUI	CGCG	2 cut(s)	138, 353
BsuI	GTATCC	1 cut(s)	472
BsuRI	GGCC	2 cut(s)	369, 420
BtgI	CCRYGG	1 cut(s)	305
BtsCI	GGATG	1 cut(s)	438
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	3 cut(s)	213, 237, 393
Cac8I	GCNNGC	1 cut(s)	367
CciI	TCATGA	1 cut(s)	450
CfoI	GCGC	1 cut(s)	355
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	18, 361
CviAII	CATG	3 cut(s)	249, 306, 451
CviJI	RGCY	6 cut(s)	5, 206, 272, 280, 369, 420
CviKI_1	RGCY	6 cut(s)	5, 206, 272, 280, 369, 420
CviQI	GTAC	2 cut(s)	18, 361
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	2 cut(s)	333, 455
DpnII	GATC	2 cut(s)	331, 453
EaeI	YGGCCR	2 cut(s)	367, 418
EciI	GGCGGA	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	314
Eco72I	CACGTG	1 cut(s)	15
EcoRI	GAATTC	2 cut(s)	163, 225
EcoRII	CCWGG	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	305
FaeI	CATG	3 cut(s)	252, 309, 454
FaiI	YATR	4 cut(s)	250, 307, 426, 452
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	3 cut(s)	248, 305, 450
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	168, 260
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	369, 420
HapII	CCGG	3 cut(s)	43, 113, 366
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	3 cut(s)	252, 309, 454
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	3 cut(s)	238, 292, 343
HindII	GTYRAC	3 cut(s)	238, 292, 343
HinfI	GANTC	6 cut(s)	57, 116, 133, 242, 254, 401
HpaII	CCGG	3 cut(s)	43, 113, 366
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	5 cut(s)	18, 238, 292, 314, 343
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	4 cut(s)	157, 177, 209, 451
Hpy8I	GTNNAC	5 cut(s)	18, 238, 292, 314, 343
Hpy99I	CGWCG	2 cut(s)	76, 189
HpyAV	CCTTC	2 cut(s)	91, 469
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	2 cut(s)	321, 410
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	252, 309, 454
HspAI	GCGC	1 cut(s)	353
KroI	GCCGGC	1 cut(s)	365
KroNI	GCCGGC	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	331, 453
LweI	GCATC	2 cut(s)	447, 531
MaeI	CTAG	2 cut(s)	168, 260
MaeII	ACGT	1 cut(s)	14
MalI	GATC	2 cut(s)	333, 455
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	2 cut(s)	331, 453
MboII	GAAGA	3 cut(s)	141, 172, 484
MhlI	GDGCHC	1 cut(s)	304
MlsI	TGGCCA	1 cut(s)	420
MluCI	AATT	3 cut(s)	163, 225, 530
MluNI	TGGCCA	1 cut(s)	420
MlyI	GAGTC	3 cut(s)	127, 248, 410
MnlI	CCTC	3 cut(s)	76, 123, 182
Mox20I	TGGCCA	1 cut(s)	420
MroNI	GCCGGC	1 cut(s)	365
MroXI	GAANNNNTTC	1 cut(s)	61
MscI	TGGCCA	1 cut(s)	420
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	307
Msp20I	TGGCCA	1 cut(s)	420
MspI	CCGG	3 cut(s)	43, 113, 366
MspR9I	CCNGG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	417
MvnI	CGCG	2 cut(s)	138, 353
NaeI	GCCGGC	1 cut(s)	367
NcoI	CCATGG	1 cut(s)	305
NdeII	GATC	2 cut(s)	331, 453
NgoMIV	GCCGGC	1 cut(s)	365
NlaIII	CATG	3 cut(s)	252, 309, 454
NlaIV	GGNNCC	3 cut(s)	79, 303, 316
OliI	CACNNNNGTG	1 cut(s)	307
PagI	TCATGA	1 cut(s)	450
PdiI	GCCGGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	61
PfeI	GAWTC	3 cut(s)	57, 116, 242
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	3 cut(s)	127, 248, 409
PmaCI	CACGTG	1 cut(s)	15
PmlI	CACGTG	1 cut(s)	15
PpsI	GAGTC	3 cut(s)	127, 248, 409
Ppu21I	YACGTR	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	415
PspCI	CACGTG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	3 cut(s)	79, 303, 316
PspPI	GGNCC	1 cut(s)	314
RsaI	GTAC	2 cut(s)	19, 362
RsaNI	GTAC	2 cut(s)	18, 361
RseI	CAYNNNNRTG	1 cut(s)	307
SalI	GTCGAC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	331, 453
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	3 cut(s)	127, 248, 410
ScrFI	CCNGG	1 cut(s)	417
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	2 cut(s)	17, 208
SfaNI	GCATC	2 cut(s)	447, 531
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	3 cut(s)	163, 225, 530
SsiI	CCGC	2 cut(s)	29, 123
SspMI	CTAG	2 cut(s)	168, 260
StyD4I	CCNGG	1 cut(s)	415
StyI	CCWWGG	1 cut(s)	305
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	4 cut(s)	91, 119, 158, 291
TasI	AATT	3 cut(s)	163, 225, 530
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	3 cut(s)	57, 116, 242
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	3 cut(s)	220, 237, 400
TseI	GCWGC	1 cut(s)	5
TspRI	CASTG	3 cut(s)	220, 237, 400
Van91I	CCANNNNNTGG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	3 cut(s)	163, 225, 530
XmiI	GTMKAC	1 cut(s)	291
XmnI	GAANNNNTTC	1 cut(s)	61
XspI	CTAG	2 cut(s)	168, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.